Wall clock time and date at job start Tue Mar 31 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30785 * 125.71859 * 2 1 4 4 C 1.34431 * 109.31631 * 179.82730 * 3 2 1 5 5 C 1.33860 * 107.80000 * 0.39414 * 4 3 2 6 6 N 1.34405 * 125.72188 * 180.31136 * 2 1 3 7 7 C 1.46461 * 128.44785 * 0.12228 * 6 2 1 8 8 C 1.53281 * 108.70323 * 162.70796 * 7 6 2 9 9 H 1.09004 * 109.42788 * 290.66462 * 8 7 6 10 10 C 1.50697 * 109.39543 * 170.78409 * 8 7 6 11 11 O 1.21286 * 119.99839 * 328.80393 * 10 8 7 12 12 N 1.34779 * 119.99951 * 148.79758 * 10 8 7 13 13 C 1.37099 * 119.99694 * 187.10431 * 12 10 8 14 14 H 1.07998 * 120.00291 * 342.53248 * 13 12 10 15 15 C 1.38954 * 119.99750 * 162.52981 * 13 12 10 16 16 N 1.31409 * 119.99999 * 350.80410 * 15 13 12 17 17 Si 1.86805 * 119.99766 * 170.80003 * 15 13 12 18 18 H 1.48495 * 109.47192 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46732 * 120.00584 * 17 15 13 20 20 H 1.48497 * 109.46876 * 240.00249 * 17 15 13 21 21 C 1.46494 * 120.00019 * 7.11355 * 12 10 8 22 22 C 1.47199 * 109.46974 * 279.19580 * 21 12 10 23 23 N 6.20071 * 105.39979 * 223.87306 * 2 1 3 24 24 C 1.53118 * 109.71327 * 50.73125 * 8 7 6 25 25 C 1.50709 * 128.68174 * 179.89580 * 5 4 3 26 26 H 1.09001 * 109.46919 * 269.69129 * 1 2 3 27 27 H 1.09000 * 109.47063 * 149.69158 * 1 2 3 28 28 H 1.08999 * 109.47105 * 29.68877 * 1 2 3 29 29 H 1.08001 * 126.10188 * 180.17521 * 4 3 2 30 30 H 1.09002 * 109.60471 * 282.47009 * 7 6 2 31 31 H 1.08998 * 109.60125 * 42.94462 * 7 6 2 32 32 H 0.96994 * 119.99929 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.47370 * 39.19833 * 21 12 10 34 34 H 1.08998 * 109.47093 * 159.20175 * 21 12 10 35 35 H 1.08998 * 109.49986 * 170.14397 * 24 8 7 36 36 H 1.09001 * 109.49963 * 50.03984 * 24 8 7 37 37 H 1.09006 * 109.74049 * 283.79313 * 25 5 4 38 38 H 1.08995 * 109.74760 * 44.46756 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2705 1.0618 0.0000 4 6 3.5601 0.6822 0.0038 5 6 3.5928 -0.6560 -0.0025 6 7 2.2917 -1.0912 -0.0059 7 6 1.8922 -2.5002 -0.0160 8 6 3.0925 -3.3483 -0.4512 9 1 3.3036 -3.1643 -1.5046 10 6 2.7731 -4.8074 -0.2513 11 8 2.0324 -5.1486 0.6465 12 7 3.3103 -5.7333 -1.0703 13 6 2.9088 -7.0412 -0.9831 14 1 2.3912 -7.3896 -0.1015 15 6 3.1677 -7.9186 -2.0290 16 7 3.6316 -7.4616 -3.1704 17 14 2.8563 -9.7478 -1.8125 18 1 2.3373 -10.0030 -0.4448 19 1 1.8575 -10.2016 -2.8133 20 1 4.1262 -10.4925 -2.0075 21 6 4.3234 -5.3420 -2.0534 22 6 3.6632 -4.7592 -3.2329 23 7 3.1536 -4.3095 -4.1432 24 6 4.3189 -2.9760 0.3866 25 6 4.7919 -1.5689 -0.0038 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 4.4170 1.3396 0.0074 30 1 1.5774 -2.7983 0.9841 31 1 1.0705 -2.6423 -0.7180 32 1 3.8127 -8.0741 -3.9004 33 1 4.9936 -4.6050 -1.6110 34 1 4.8959 -6.2194 -2.3541 35 1 5.1182 -3.6932 0.2003 36 1 4.0552 -2.9907 1.4441 37 1 5.2356 -1.5925 -0.9992 38 1 5.5265 -1.2129 0.7184 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517032747.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:25 Heat of formation + Delta-G solvation = 41.885921 kcal Electronic energy + Delta-G solvation = -23170.537905 eV Core-core repulsion = 19820.688051 eV Total energy + Delta-G solvation = -3349.849854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.37812 -40.98920 -37.86819 -37.21345 -36.25003 -34.34042 -33.74349 -32.13923 -30.84522 -29.26558 -27.38777 -27.09974 -25.18140 -23.34933 -22.00892 -20.80751 -19.85698 -19.72228 -18.51424 -18.01782 -17.55192 -16.99909 -16.32925 -16.03243 -15.69359 -15.38400 -14.93793 -14.87990 -14.82039 -14.67255 -14.46242 -13.93547 -13.85530 -13.76190 -13.47255 -13.29363 -13.20156 -12.99225 -12.78229 -12.68311 -12.41045 -12.17294 -12.08898 -12.07778 -11.88786 -11.18555 -10.95139 -10.61309 -10.41405 -9.97555 -9.11923 -8.36728 -6.03390 1.08101 1.35081 1.48005 1.57544 1.65054 1.84426 1.90498 2.13112 2.14382 2.31018 2.93038 2.99746 3.34692 3.45019 3.57602 3.60387 3.70126 3.82805 4.04584 4.18675 4.28432 4.31498 4.46081 4.50224 4.55174 4.65871 4.68885 4.87128 4.93270 4.98649 5.05095 5.07555 5.18422 5.46005 5.48244 5.85072 5.97211 6.22608 6.35072 6.87558 7.05424 7.10985 7.28124 7.79857 8.61366 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.004688 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.778435 B = 5970.699644 C = 6164.112195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.188 3.812 3 N -0.525 5.525 4 C -0.042 4.042 5 C -0.032 4.032 6 N -0.453 5.453 7 C 0.129 3.871 8 C -0.105 4.105 9 H 0.087 0.913 10 C 0.464 3.536 11 O -0.607 6.607 12 N -0.449 5.449 13 C -0.330 4.330 14 H 0.088 0.912 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.989 3.011 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.210 3.790 22 C 0.255 3.745 23 N -0.508 5.508 24 C -0.109 4.109 25 C -0.037 4.037 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.191 0.809 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.275 0.725 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 8.120 5.264 10.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 N -0.246 5.246 4 C -0.189 4.189 5 C -0.147 4.147 6 N -0.136 5.136 7 C 0.006 3.994 8 C -0.128 4.128 9 H 0.105 0.895 10 C 0.253 3.747 11 O -0.492 6.492 12 N -0.168 5.168 13 C -0.457 4.457 14 H 0.106 0.894 15 C -0.197 4.197 16 N -0.540 5.540 17 Si 0.814 3.186 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.189 1.189 21 C 0.084 3.916 22 C -0.062 4.062 23 N -0.189 5.189 24 C -0.147 4.147 25 C -0.075 4.075 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.208 0.792 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.565 9.166 4.176 10.685 hybrid contribution -0.127 -2.072 -0.056 2.077 sum 3.438 7.094 4.120 8.895 Atomic orbital electron populations 1.20285 0.83307 1.04500 1.04465 1.23682 0.96931 0.81106 1.05610 1.70413 1.03073 1.28790 1.22314 1.22233 0.94948 0.92595 1.09111 1.21713 0.86235 0.95903 1.10809 1.45385 1.07073 1.06990 1.54180 1.21589 0.97254 0.76723 1.03820 1.21426 0.97448 0.91583 1.02312 0.89498 1.20324 0.82506 0.87282 0.84622 1.90533 1.41082 1.82379 1.35224 1.43714 1.35416 1.07364 1.30303 1.19775 1.37669 0.84515 1.03740 0.89430 1.25882 0.96167 1.04030 0.93647 1.69868 1.44500 1.36583 1.03077 0.84902 0.78213 0.77518 0.77935 1.19633 1.21509 1.18903 1.19501 0.89245 1.02053 0.80817 1.29962 0.92700 0.89255 0.94324 1.80966 1.09672 1.15191 1.13043 1.21669 0.95585 0.98091 0.99359 1.20384 0.92251 0.90169 1.04708 0.88896 0.90461 0.88483 0.79175 0.88782 0.89882 0.91420 0.85516 0.83402 0.87944 0.91115 0.88315 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.24 71.24 0.73 -0.77 16 2 C 0.19 5.62 7.94 138.25 1.10 6.72 16 3 N -0.53 -16.77 11.27 -188.77 -2.13 -18.90 16 4 C -0.04 -1.17 11.84 83.30 0.99 -0.18 16 5 C -0.03 -0.86 6.57 40.73 0.27 -0.60 16 6 N -0.45 -13.46 3.13 -500.15 -1.57 -15.02 16 7 C 0.13 4.01 5.74 86.48 0.50 4.51 16 8 C -0.11 -3.30 1.71 -11.41 -0.02 -3.32 16 9 H 0.09 2.79 5.69 -2.39 -0.01 2.78 16 10 C 0.46 18.95 6.55 87.66 0.57 19.52 16 11 O -0.61 -29.16 15.65 -3.05 -0.05 -29.20 16 12 N -0.45 -19.17 2.62 -645.44 -1.69 -20.86 16 13 C -0.33 -15.94 9.44 84.04 0.79 -15.15 16 14 H 0.09 4.57 7.28 -2.91 -0.02 4.55 16 15 C 0.00 0.16 5.18 84.93 0.44 0.60 16 16 N -0.90 -41.60 9.05 21.66 0.20 -41.40 16 17 Si 0.99 38.16 29.56 68.60 2.03 40.19 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.29 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 21 C 0.21 7.51 4.80 84.57 0.41 7.91 16 22 C 0.25 10.35 12.48 89.44 1.12 11.47 16 23 N -0.51 -22.67 18.54 20.01 0.37 -22.30 16 24 C -0.11 -2.58 5.01 30.80 0.15 -2.42 16 25 C -0.04 -0.72 6.31 30.02 0.19 -0.53 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.63 7.59 -2.39 -0.02 1.61 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.09 3.05 7.53 -2.39 -0.02 3.03 16 31 H 0.08 2.64 7.72 -2.39 -0.02 2.62 16 32 H 0.28 12.31 8.31 -92.71 -0.77 11.54 16 33 H 0.13 3.23 6.06 -2.39 -0.01 3.21 16 34 H 0.15 5.62 5.76 -2.39 -0.01 5.60 16 35 H 0.10 2.05 6.96 -2.39 -0.02 2.04 16 36 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 37 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.03 316.59 5.49 -59.54 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 1.10 Total: 20.21 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 7.23 Total: 27.76 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.82 Total: -118.49 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -65.03 5.49 -59.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517032747.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.429 kcal (2) G-P(sol) polarization free energy of solvation -65.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds