Wall clock time and date at job start Tue Mar 31 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39987 * 125.88111 * 2 1 4 4 C 1.30172 * 109.71509 * 180.02562 * 3 2 1 5 5 C 1.41359 * 108.51324 * 359.76887 * 4 3 2 6 6 C 1.36900 * 125.87919 * 180.02562 * 2 1 3 7 7 N 1.32841 * 133.42848 * 359.97438 * 6 2 1 8 8 C 1.31680 * 121.81058 * 180.02562 * 7 6 2 9 9 C 1.38372 * 121.60561 * 0.02562 * 8 7 6 10 10 C 1.38976 * 119.44778 * 359.97438 * 9 8 7 11 11 N 1.38814 * 121.01574 * 179.97438 * 10 9 8 12 12 C 1.48558 * 111.00009 * 60.12945 * 11 10 9 13 13 C 1.54383 * 104.59525 * 200.95821 * 12 11 10 14 14 C 1.54266 * 105.05702 * 23.84938 * 13 12 11 15 15 O 1.42901 * 110.32265 * 240.99866 * 14 13 12 16 16 C 1.50702 * 110.32399 * 118.89779 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45683 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17242 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.48559 * 111.00343 * 304.70420 * 11 10 9 25 25 H 1.09004 * 109.46629 * 269.99239 * 1 2 3 26 26 H 1.08997 * 109.47046 * 29.99460 * 1 2 3 27 27 H 1.08996 * 109.47363 * 149.99981 * 1 2 3 28 28 H 1.08006 * 125.74117 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.19298 * 180.02562 * 8 7 6 30 30 H 1.07995 * 120.27063 * 179.97438 * 9 8 7 31 31 H 1.08997 * 110.41717 * 82.18020 * 12 11 10 32 32 H 1.09004 * 110.40936 * 319.73448 * 12 11 10 33 33 H 1.09001 * 110.32373 * 264.95852 * 13 12 11 34 34 H 1.08998 * 110.32216 * 142.74225 * 13 12 11 35 35 H 0.96694 * 114.00043 * 297.17277 * 15 14 13 36 36 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 37 37 H 1.09007 * 110.40823 * 40.26399 * 24 11 10 38 38 H 1.08999 * 110.41202 * 277.82619 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2854 1.1342 0.0000 4 6 3.5357 0.7718 -0.0005 5 6 3.5936 -0.6406 0.0045 6 6 2.2673 -1.1092 -0.0005 7 7 2.0208 -2.4146 -0.0006 8 6 2.9916 -3.3043 -0.0007 9 6 4.3225 -2.9254 0.0000 10 6 4.6482 -1.5743 0.0002 11 7 5.9724 -1.1578 0.0014 12 6 6.6886 -1.6572 -1.2006 13 6 8.1824 -1.6015 -0.8144 14 6 8.2004 -1.6634 0.7269 15 8 8.7993 -0.4824 1.2641 16 6 8.9476 -2.8864 1.1930 17 1 8.4393 -3.6403 1.7758 18 6 10.2786 -3.0457 0.8703 19 7 10.8975 -2.1277 0.1605 20 14 11.2027 -4.5652 1.4414 21 1 10.2867 -5.4390 2.2178 22 1 11.7120 -5.3079 0.2605 23 1 12.3440 -4.1573 2.2995 24 6 6.7162 -1.7512 1.1423 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5138 28 1 4.3857 1.4381 -0.0011 29 1 2.7430 -4.3553 -0.0012 30 1 5.1014 -3.6734 0.0004 31 1 6.4929 -1.0105 -2.0558 32 1 6.3911 -2.6822 -1.4219 33 1 8.6286 -0.6694 -1.1611 34 1 8.7138 -2.4558 -1.2338 35 1 9.7263 -0.3638 1.0161 36 1 11.8341 -2.2396 -0.0662 37 1 6.4230 -2.7910 1.2876 38 1 6.5410 -1.1754 2.0510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:48 Heat of formation + Delta-G solvation = 53.082610 kcal Electronic energy + Delta-G solvation = -22886.139910 eV Core-core repulsion = 19536.775582 eV Total energy + Delta-G solvation = -3349.364329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.79920 -40.62999 -38.82369 -36.88509 -34.55194 -34.14630 -32.67394 -31.23022 -29.85106 -29.75970 -27.76602 -26.62463 -24.50860 -23.97879 -22.55629 -21.40767 -21.06603 -19.16287 -18.50750 -18.22205 -17.66987 -16.94082 -16.85554 -16.40326 -15.74269 -15.56990 -15.29331 -14.97907 -14.86250 -14.34185 -14.23445 -13.91844 -13.73747 -13.39630 -13.30079 -13.23686 -13.20672 -12.90008 -12.46513 -12.39266 -12.19482 -12.10056 -11.85581 -11.26149 -11.00859 -10.66831 -10.56485 -10.10792 -9.92992 -9.63019 -9.26682 -8.19501 -6.35679 -0.37664 0.21400 1.20171 1.42100 1.45307 1.46896 1.56007 2.40024 2.67478 2.76772 3.06487 3.19722 3.53504 3.79296 3.86542 3.90405 3.99736 4.22641 4.24893 4.40796 4.41341 4.45393 4.50702 4.57354 4.65350 4.66788 4.81995 5.06424 5.09337 5.12271 5.23718 5.40841 5.46763 5.56055 5.64240 5.82083 5.85702 6.19263 6.26498 6.40954 6.71139 6.86533 7.36316 7.50113 8.85746 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.004181 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.599026 B = 6695.122582 C = 7192.653901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.400 5.400 3 N -0.265 5.265 4 C 0.098 3.902 5 C -0.228 4.228 6 C 0.299 3.701 7 N -0.522 5.522 8 C 0.190 3.810 9 C -0.257 4.257 10 C 0.209 3.791 11 N -0.488 5.488 12 C 0.049 3.951 13 C -0.109 4.109 14 C 0.239 3.761 15 O -0.596 6.596 16 C -0.559 4.559 17 H 0.058 0.942 18 C 0.032 3.968 19 N -0.909 5.909 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.283 1.283 24 C 0.067 3.933 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.209 0.791 29 H 0.205 0.795 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.375 0.625 36 H 0.269 0.731 37 H 0.064 0.936 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -0.909 -2.907 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.192 5.192 3 N -0.078 5.078 4 C -0.097 4.097 5 C -0.239 4.239 6 C 0.059 3.941 7 N -0.238 5.238 8 C 0.022 3.978 9 C -0.281 4.281 10 C 0.103 3.897 11 N -0.209 5.209 12 C -0.077 4.077 13 C -0.148 4.148 14 C 0.200 3.800 15 O -0.404 6.404 16 C -0.598 4.598 17 H 0.076 0.924 18 C -0.169 4.169 19 N -0.549 5.549 20 Si 0.783 3.217 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.209 1.209 24 C -0.059 4.059 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.226 0.774 29 H 0.222 0.778 30 H 0.168 0.832 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.821 0.644 -2.712 18.037 hybrid contribution 2.874 -1.839 0.045 3.413 sum -14.946 -1.195 -2.667 15.229 Atomic orbital electron populations 1.22049 0.71347 1.05490 1.04215 1.48562 1.07226 0.99764 1.63606 1.76807 1.02360 1.08101 1.20551 1.24090 0.95066 0.93756 0.96827 1.19506 0.93424 0.95343 1.15641 1.19255 0.88456 0.88887 0.97487 1.66862 1.38025 0.98540 1.20422 1.23120 0.86616 0.99586 0.88518 1.22678 0.99716 0.96332 1.09361 1.19057 0.89948 0.91101 0.89644 1.62776 0.98697 1.55165 1.04276 1.23219 0.93787 0.98804 0.91859 1.22651 0.93265 1.00309 0.98583 1.19457 0.88231 0.83239 0.89118 1.86130 1.30461 1.46130 1.77721 1.21956 0.96533 1.06178 1.35090 0.92422 1.25640 0.98136 0.99087 0.94017 1.69793 1.11654 1.35326 1.38110 0.85524 0.78376 0.79682 0.78108 1.19400 1.20380 1.20913 1.23081 0.92920 0.97271 0.92625 0.90148 0.87916 0.88404 0.77422 0.77826 0.83206 0.89751 0.92384 0.93735 0.92440 0.77589 0.92155 0.91798 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.91 11.48 127.77 1.47 3.38 16 2 N -0.40 -11.04 4.06 -366.66 -1.49 -12.53 16 3 N -0.26 -7.85 12.44 -56.37 -0.70 -8.55 16 4 C 0.10 2.98 12.05 85.71 1.03 4.01 16 5 C -0.23 -7.41 6.14 -21.28 -0.13 -7.54 16 6 C 0.30 9.13 7.99 134.01 1.07 10.20 16 7 N -0.52 -14.48 10.39 -193.28 -2.01 -16.49 16 8 C 0.19 4.50 11.14 84.75 0.94 5.44 16 9 C -0.26 -7.13 8.13 22.48 0.18 -6.95 16 10 C 0.21 6.85 4.94 38.86 0.19 7.04 16 11 N -0.49 -17.95 5.40 -680.17 -3.67 -21.62 16 12 C 0.05 1.75 6.36 86.45 0.55 2.30 16 13 C -0.11 -4.80 5.55 31.49 0.17 -4.63 16 14 C 0.24 11.41 1.06 -10.64 -0.01 11.40 16 15 O -0.60 -30.87 12.95 -148.98 -1.93 -32.80 16 16 C -0.56 -28.51 8.08 25.60 0.21 -28.30 16 17 H 0.06 2.91 7.58 -2.91 -0.02 2.89 16 18 C 0.03 1.62 5.01 84.66 0.42 2.04 16 19 N -0.91 -46.89 10.80 21.45 0.23 -46.66 16 20 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.07 2.77 5.62 86.45 0.49 3.26 16 25 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.21 5.62 8.06 -2.91 -0.02 5.60 16 29 H 0.21 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.15 3.93 6.86 -2.91 -0.02 3.91 16 31 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 1.92 6.85 -2.38 -0.02 1.91 16 33 H 0.04 2.04 7.98 -2.39 -0.02 2.02 16 34 H 0.06 2.70 7.22 -2.39 -0.02 2.69 16 35 H 0.37 19.79 7.31 -74.06 -0.54 19.25 16 36 H 0.27 13.23 8.31 -92.70 -0.77 12.46 16 37 H 0.06 2.51 6.10 -2.38 -0.01 2.50 16 38 H 0.06 2.79 8.08 -2.39 -0.02 2.77 16 Total: -1.00 -60.79 315.42 -0.40 -61.19 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.56 Total: 33.34 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.59 Total: 1.67 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -7.64 Total: -105.84 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.93 Total: -32.80 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -60.79 -0.40 -61.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.272 kcal (2) G-P(sol) polarization free energy of solvation -60.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds