Wall clock time and date at job start Tue Mar 31 2020 03:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.31894 * 119.90879 * 2 1
4 4 N 1.28272 * 122.67647 * 180.02562 * 3 2 1
5 5 C 1.32582 * 122.19889 * 0.02562 * 4 3 2
6 6 N 1.38457 * 120.28183 * 180.02562 * 5 4 3
7 7 C 1.47899 * 111.00117 * 120.12342 * 6 5 4
8 8 C 1.53997 * 107.05889 * 145.84249 * 7 6 5
9 9 C 1.54593 * 105.13807 * 358.77516 * 8 7 6
10 10 O 1.42904 * 110.72258 * 96.40366 * 9 8 7
11 11 C 1.50705 * 110.72583 * 219.68092 * 9 8 7
12 12 H 1.07993 * 119.99953 * 118.54560 * 11 9 8
13 13 C 1.37878 * 119.99835 * 298.55374 * 11 9 8
14 14 N 1.31514 * 120.00255 * 359.97438 * 13 11 9
15 15 Si 1.86799 * 119.99873 * 179.97438 * 13 11 9
16 16 H 1.48511 * 109.47020 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47273 * 119.99517 * 15 13 11
18 18 H 1.48497 * 109.47130 * 239.99689 * 15 13 11
19 19 C 1.48538 * 111.00002 * 237.52139 * 6 5 4
20 20 C 1.40772 * 119.43914 * 0.26902 * 5 4 3
21 21 C 1.43205 * 121.19748 * 179.72542 * 20 5 4
22 22 N 4.80788 * 136.66517 * 180.32743 * 2 1 3
23 23 C 1.38455 * 119.90625 * 180.02562 * 2 1 3
24 24 C 1.50700 * 121.05490 * 359.95723 * 23 2 1
25 25 H 1.09000 * 109.47224 * 89.99511 * 1 2 3
26 26 H 1.08997 * 109.47181 * 210.00248 * 1 2 3
27 27 H 1.09004 * 109.47010 * 329.99537 * 1 2 3
28 28 H 1.09004 * 109.91646 * 26.49276 * 7 6 5
29 29 H 1.09001 * 110.08341 * 265.28953 * 7 6 5
30 30 H 1.09004 * 110.30998 * 117.69119 * 8 7 6
31 31 H 1.08998 * 110.30811 * 239.85930 * 8 7 6
32 32 H 0.96700 * 114.00523 * 61.45046 * 10 9 8
33 33 H 0.96994 * 120.00103 * 180.02562 * 14 13 11
34 34 H 1.09007 * 110.66246 * 318.71199 * 19 6 5
35 35 H 1.08993 * 110.66698 * 81.83893 * 19 6 5
36 36 H 1.09004 * 109.47166 * 89.99730 * 24 23 2
37 37 H 1.08998 * 109.47123 * 209.99955 * 24 23 2
38 38 H 1.09003 * 109.46490 * 329.99470 * 24 23 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1646 1.1433 0.0000
4 7 3.4458 1.2052 -0.0005
5 6 4.2056 0.1187 -0.0015
6 7 5.5856 0.2318 -0.0015
7 6 6.1705 -0.4166 1.1922
8 6 7.5232 -1.0153 0.7639
9 6 7.6482 -0.6933 -0.7430
10 8 8.4225 0.4908 -0.9445
11 6 8.2474 -1.8574 -1.4892
12 1 7.6815 -2.3496 -2.2662
13 6 9.5180 -2.2942 -1.1798
14 7 10.2073 -1.6946 -0.2338
15 14 10.2605 -3.7376 -2.1043
16 1 9.2883 -4.2330 -3.1117
17 1 11.5037 -3.3004 -2.7887
18 1 10.5793 -4.8273 -1.1471
19 6 6.1769 -0.4658 -1.1720
20 6 3.5975 -1.1508 -0.0079
21 6 4.3818 -2.3490 -0.0151
22 7 5.0040 -3.2994 -0.0189
23 6 2.1973 -1.2002 -0.0005
24 6 1.4657 -2.5177 -0.0002
25 1 -0.3634 0.0001 -1.0277
26 1 -0.3633 -0.8899 0.5139
27 1 -0.3633 0.8900 0.5139
28 1 5.5097 -1.2079 1.5462
29 1 6.3235 0.3198 1.9811
30 1 8.3365 -0.5482 1.3193
31 1 7.5266 -2.0937 0.9218
32 1 9.3314 0.4263 -0.6206
33 1 11.1013 -2.0016 -0.0164
34 1 5.6753 -1.4178 -1.3461
35 1 6.1280 0.1640 -2.0602
36 1 1.2887 -2.8353 -1.0278
37 1 2.0678 -3.2674 0.5132
38 1 0.5117 -2.4034 0.5144
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591977480.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:18
Heat of formation + Delta-G solvation = 61.405985 kcal
Electronic energy + Delta-G solvation = -23282.468592 eV
Core-core repulsion = 19933.465192 eV
Total energy + Delta-G solvation = -3349.003400 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 288.133 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.59626 -38.94289 -36.70814 -35.50833 -34.68693 -32.75288 -32.17824 -30.00252
-28.67082 -28.34015 -27.49367 -24.91192 -24.58488 -22.40057 -20.62300 -19.76788
-18.95024 -18.26605 -17.18598 -16.25133 -15.69166 -15.04895 -14.84160 -14.51388
-14.23799 -13.91115 -13.70028 -13.57284 -13.36435 -13.27607 -12.99001 -12.76719
-12.65390 -12.55384 -12.21815 -12.09605 -11.76068 -11.38180 -11.34487 -11.01721
-10.79644 -10.60762 -10.44780 -10.08648 -9.93892 -9.83877 -9.51599 -9.22169
-8.65471 -8.28916 -8.12467 -6.26521 -4.34446 0.15966 0.69422 2.60043
2.85581 3.19480 3.27935 3.32206 3.49069 3.51690 3.53567 4.00949
4.19557 4.27785 4.44668 4.57354 4.93162 5.00827 5.05249 5.16936
5.27915 5.34820 5.47777 5.50948 5.53398 5.63941 5.67631 5.82472
5.90495 5.97574 6.16970 6.33202 6.62575 6.82913 7.04013 7.29241
7.33368 7.39781 7.42018 7.74492 8.05128 8.67034 8.69586 9.34119
9.46764 10.81057
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.026265 B = 0.005080 C = 0.004565
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.818750 B = 5510.951849 C = 6132.383526
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C 0.052 3.948
3 N -0.212 5.212
4 N -0.216 5.216
5 C 0.300 3.700
6 N -0.470 5.470
7 C 0.041 3.959
8 C -0.128 4.128
9 C 0.265 3.735
10 O -0.577 6.577
11 C -0.534 4.534
12 H 0.060 0.940
13 C 0.074 3.926
14 N -0.893 5.893
15 Si 0.899 3.101
16 H -0.272 1.272
17 H -0.281 1.281
18 H -0.282 1.282
19 C 0.054 3.946
20 C -0.058 4.058
21 C 0.233 3.767
22 N -0.352 5.352
23 C -0.029 4.029
24 C -0.124 4.124
25 H 0.085 0.915
26 H 0.081 0.919
27 H 0.085 0.915
28 H 0.033 0.967
29 H 0.080 0.920
30 H 0.076 0.924
31 H 0.068 0.932
32 H 0.380 0.620
33 H 0.267 0.733
34 H 0.054 0.946
35 H 0.085 0.915
36 H 0.091 0.909
37 H 0.076 0.924
38 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.534 -0.644 2.635 17.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.093 4.093
3 N -0.055 5.055
4 N -0.059 5.059
5 C 0.061 3.939
6 N -0.193 5.193
7 C -0.085 4.085
8 C -0.166 4.166
9 C 0.225 3.775
10 O -0.385 6.385
11 C -0.573 4.573
12 H 0.079 0.921
13 C -0.128 4.128
14 N -0.532 5.532
15 Si 0.727 3.273
16 H -0.197 1.197
17 H -0.207 1.207
18 H -0.208 1.208
19 C -0.072 4.072
20 C -0.076 4.076
21 C -0.083 4.083
22 N -0.028 5.028
23 C -0.043 4.043
24 C -0.181 4.181
25 H 0.104 0.896
26 H 0.100 0.900
27 H 0.103 0.897
28 H 0.051 0.949
29 H 0.098 0.902
30 H 0.094 0.906
31 H 0.087 0.913
32 H 0.230 0.770
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.103 0.897
36 H 0.109 0.891
37 H 0.094 0.906
38 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -16.892 0.343 2.460 17.074
hybrid contribution 0.738 -2.959 -0.130 3.052
sum -16.154 -2.616 2.330 16.529
Atomic orbital electron populations
1.20722 0.86967 1.04218 1.03835 1.22684 0.99188 0.89149 0.98297
1.72915 1.01425 1.24298 1.06884 1.73256 0.97962 1.24906 1.09745
1.22057 0.93610 0.87266 0.90964 1.61716 0.97673 1.54604 1.05280
1.23179 0.97653 0.96306 0.91376 1.23001 0.92899 1.00312 1.00437
1.19217 0.85057 0.83887 0.89373 1.86154 1.28154 1.38741 1.85454
1.21488 1.00803 1.14655 1.20343 0.92140 1.24949 0.96705 0.96697
0.94480 1.69725 1.12000 1.41408 1.30071 0.86418 0.79122 0.81969
0.79824 1.19690 1.20674 1.20831 1.23597 0.96575 0.95481 0.91550
1.17910 0.92469 0.90848 1.06383 1.24732 0.94353 0.93080 0.96103
1.81388 1.05549 1.10681 1.05152 1.21076 0.91540 0.97938 0.93794
1.21010 1.00816 0.92195 1.04116 0.89635 0.90001 0.89656 0.94905
0.90186 0.90579 0.91317 0.77015 0.92279 0.92793 0.89659 0.89063
0.90553 0.89206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.65 9.81 36.00 0.35 -0.30 16
2 C 0.05 0.59 6.86 -82.49 -0.57 0.02 16
3 N -0.21 -3.17 11.39 33.56 0.38 -2.79 16
4 N -0.22 -3.85 11.53 31.40 0.36 -3.49 16
5 C 0.30 5.39 5.94 -154.77 -0.92 4.47 16
6 N -0.47 -9.62 5.35 -168.82 -0.90 -10.52 16
7 C 0.04 0.82 6.01 -2.75 -0.02 0.80 16
8 C -0.13 -2.94 5.26 -25.37 -0.13 -3.07 16
9 C 0.27 6.58 0.95 -89.91 -0.09 6.49 16
10 O -0.58 -15.08 13.09 -35.23 -0.46 -15.54 16
11 C -0.53 -14.31 8.14 -34.44 -0.28 -14.59 16
12 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16
13 C 0.07 1.97 5.28 -17.82 -0.09 1.88 16
14 N -0.89 -23.67 11.02 55.43 0.61 -23.06 16
15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16
16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
19 C 0.05 1.19 5.29 -1.90 -0.01 1.18 16
20 C -0.06 -0.90 5.23 -106.31 -0.56 -1.46 16
21 C 0.23 3.96 8.57 -22.47 -0.19 3.77 16
22 N -0.35 -6.66 18.36 41.84 0.77 -5.89 16
23 C -0.03 -0.34 5.96 -103.84 -0.62 -0.96 16
24 C -0.12 -0.97 9.31 36.01 0.34 -0.63 16
25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16
26 H 0.08 0.34 6.04 -51.93 -0.31 0.03 16
27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
28 H 0.03 0.61 5.54 -51.93 -0.29 0.33 16
29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16
30 H 0.08 1.82 7.99 -51.93 -0.41 1.40 16
31 H 0.07 1.69 7.84 -51.93 -0.41 1.28 16
32 H 0.38 9.93 7.48 45.56 0.34 10.27 16
33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16
34 H 0.05 1.17 4.77 -51.93 -0.25 0.92 16
35 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16
36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16
37 H 0.08 0.66 7.26 -51.93 -0.38 0.28 16
38 H 0.09 0.44 6.06 -51.93 -0.31 0.12 16
LS Contribution 314.00 15.07 4.73 4.73
Total: -1.00 -30.01 314.00 -5.99 -36.01
By element:
Atomic # 1 Polarization: 10.72 SS G_CDS: -3.68 Total: 7.04 kcal
Atomic # 6 Polarization: 0.39 SS G_CDS: -2.78 Total: -2.39 kcal
Atomic # 7 Polarization: -46.98 SS G_CDS: 1.22 Total: -45.76 kcal
Atomic # 8 Polarization: -15.08 SS G_CDS: -0.46 Total: -15.54 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -30.01 -5.99 -36.01 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591977480.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.414 kcal
(2) G-P(sol) polarization free energy of solvation -30.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds