Wall clock time and date at job start Tue Mar 31 2020 03:13:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.31894 * 119.90879 * 2 1
4 4 N 1.28272 * 122.67647 * 180.02562 * 3 2 1
5 5 C 1.32582 * 122.19889 * 0.02562 * 4 3 2
6 6 N 1.38457 * 120.28183 * 180.02562 * 5 4 3
7 7 C 1.47899 * 111.00117 * 120.12342 * 6 5 4
8 8 C 1.53997 * 107.05889 * 145.84249 * 7 6 5
9 9 C 1.54593 * 105.13807 * 358.77516 * 8 7 6
10 10 O 1.42904 * 110.72258 * 96.40366 * 9 8 7
11 11 C 1.50705 * 110.72583 * 219.68092 * 9 8 7
12 12 H 1.07993 * 119.99953 * 118.54560 * 11 9 8
13 13 C 1.37878 * 119.99835 * 298.55374 * 11 9 8
14 14 N 1.31514 * 120.00255 * 359.97438 * 13 11 9
15 15 Si 1.86799 * 119.99873 * 179.97438 * 13 11 9
16 16 H 1.48511 * 109.47020 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47273 * 119.99517 * 15 13 11
18 18 H 1.48497 * 109.47130 * 239.99689 * 15 13 11
19 19 C 1.48538 * 111.00002 * 237.52139 * 6 5 4
20 20 C 1.40772 * 119.43914 * 0.26902 * 5 4 3
21 21 C 1.43205 * 121.19748 * 179.72542 * 20 5 4
22 22 N 4.80788 * 136.66517 * 180.32743 * 2 1 3
23 23 C 1.38455 * 119.90625 * 180.02562 * 2 1 3
24 24 C 1.50700 * 121.05490 * 359.95723 * 23 2 1
25 25 H 1.09000 * 109.47224 * 89.99511 * 1 2 3
26 26 H 1.08997 * 109.47181 * 210.00248 * 1 2 3
27 27 H 1.09004 * 109.47010 * 329.99537 * 1 2 3
28 28 H 1.09004 * 109.91646 * 26.49276 * 7 6 5
29 29 H 1.09001 * 110.08341 * 265.28953 * 7 6 5
30 30 H 1.09004 * 110.30998 * 117.69119 * 8 7 6
31 31 H 1.08998 * 110.30811 * 239.85930 * 8 7 6
32 32 H 0.96700 * 114.00523 * 61.45046 * 10 9 8
33 33 H 0.96994 * 120.00103 * 180.02562 * 14 13 11
34 34 H 1.09007 * 110.66246 * 318.71199 * 19 6 5
35 35 H 1.08993 * 110.66698 * 81.83893 * 19 6 5
36 36 H 1.09004 * 109.47166 * 89.99730 * 24 23 2
37 37 H 1.08998 * 109.47123 * 209.99955 * 24 23 2
38 38 H 1.09003 * 109.46490 * 329.99470 * 24 23 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1646 1.1433 0.0000
4 7 3.4458 1.2052 -0.0005
5 6 4.2056 0.1187 -0.0015
6 7 5.5856 0.2318 -0.0015
7 6 6.1705 -0.4166 1.1922
8 6 7.5232 -1.0153 0.7639
9 6 7.6482 -0.6933 -0.7430
10 8 8.4225 0.4908 -0.9445
11 6 8.2474 -1.8574 -1.4892
12 1 7.6815 -2.3496 -2.2662
13 6 9.5180 -2.2942 -1.1798
14 7 10.2073 -1.6946 -0.2338
15 14 10.2605 -3.7376 -2.1043
16 1 9.2883 -4.2330 -3.1117
17 1 11.5037 -3.3004 -2.7887
18 1 10.5793 -4.8273 -1.1471
19 6 6.1769 -0.4658 -1.1720
20 6 3.5975 -1.1508 -0.0079
21 6 4.3818 -2.3490 -0.0151
22 7 5.0040 -3.2994 -0.0189
23 6 2.1973 -1.2002 -0.0005
24 6 1.4657 -2.5177 -0.0002
25 1 -0.3634 0.0001 -1.0277
26 1 -0.3633 -0.8899 0.5139
27 1 -0.3633 0.8900 0.5139
28 1 5.5097 -1.2079 1.5462
29 1 6.3235 0.3198 1.9811
30 1 8.3365 -0.5482 1.3193
31 1 7.5266 -2.0937 0.9218
32 1 9.3314 0.4263 -0.6206
33 1 11.1013 -2.0016 -0.0164
34 1 5.6753 -1.4178 -1.3461
35 1 6.1280 0.1640 -2.0602
36 1 1.2887 -2.8353 -1.0278
37 1 2.0678 -3.2674 0.5132
38 1 0.5117 -2.4034 0.5144
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591977480.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:17
Heat of formation + Delta-G solvation = 38.735546 kcal
Electronic energy + Delta-G solvation = -23283.451656 eV
Core-core repulsion = 19933.465192 eV
Total energy + Delta-G solvation = -3349.986464 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 288.133 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.80193 -40.48561 -38.12992 -37.08138 -35.88206 -34.24295 -34.06803 -31.39843
-30.14471 -29.60061 -28.68969 -26.68028 -25.69491 -23.71820 -22.12174 -21.66748
-20.14737 -19.58037 -18.89967 -17.89001 -17.04394 -16.81744 -16.41134 -15.89646
-15.53463 -15.36523 -14.95377 -14.79775 -14.49286 -14.39013 -14.36397 -14.09884
-13.91438 -13.66604 -13.51344 -13.40930 -13.31323 -13.02776 -12.76707 -12.67030
-12.57104 -12.31924 -12.15621 -11.91032 -11.34403 -11.10363 -10.96973 -10.69449
-10.49225 -10.22945 -9.72677 -8.28931 -6.43741 -0.97759 -0.40291 1.28400
1.33563 1.36716 1.46761 1.61700 2.11996 2.30216 2.32543 2.35684
2.96265 2.97095 3.27827 3.35769 3.55329 3.75429 3.82407 3.94191
4.01626 4.12016 4.31902 4.43122 4.54227 4.57171 4.65761 4.69032
4.81857 4.87509 4.95471 4.98881 5.09338 5.24814 5.39153 5.40670
5.44685 5.69744 5.85035 6.05659 6.10704 6.59296 7.27260 7.39585
7.54677 8.77560
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.026265 B = 0.005080 C = 0.004565
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.818750 B = 5510.951849 C = 6132.383526
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.069 3.931
3 N -0.232 5.232
4 N -0.247 5.247
5 C 0.277 3.723
6 N -0.479 5.479
7 C 0.050 3.950
8 C -0.114 4.114
9 C 0.252 3.748
10 O -0.586 6.586
11 C -0.556 4.556
12 H 0.048 0.952
13 C 0.037 3.963
14 N -0.907 5.907
15 Si 0.954 3.046
16 H -0.275 1.275
17 H -0.274 1.274
18 H -0.278 1.278
19 C 0.064 3.936
20 C -0.079 4.079
21 C 0.253 3.747
22 N -0.394 5.394
23 C -0.003 4.003
24 C -0.127 4.127
25 H 0.107 0.893
26 H 0.116 0.884
27 H 0.090 0.910
28 H 0.044 0.956
29 H 0.092 0.908
30 H 0.061 0.939
31 H 0.048 0.952
32 H 0.376 0.624
33 H 0.271 0.729
34 H 0.056 0.944
35 H 0.074 0.926
36 H 0.112 0.888
37 H 0.068 0.932
38 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.669 -1.545 2.742 20.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.077 4.077
3 N -0.074 5.074
4 N -0.088 5.088
5 C 0.037 3.963
6 N -0.202 5.202
7 C -0.076 4.076
8 C -0.153 4.153
9 C 0.212 3.788
10 O -0.394 6.394
11 C -0.594 4.594
12 H 0.066 0.934
13 C -0.165 4.165
14 N -0.546 5.546
15 Si 0.780 3.220
16 H -0.200 1.200
17 H -0.199 1.199
18 H -0.204 1.204
19 C -0.063 4.063
20 C -0.096 4.096
21 C -0.062 4.062
22 N -0.070 5.070
23 C -0.017 4.017
24 C -0.183 4.183
25 H 0.125 0.875
26 H 0.135 0.865
27 H 0.109 0.891
28 H 0.062 0.938
29 H 0.110 0.890
30 H 0.080 0.920
31 H 0.067 0.933
32 H 0.225 0.775
33 H 0.080 0.920
34 H 0.074 0.926
35 H 0.092 0.908
36 H 0.130 0.870
37 H 0.087 0.913
38 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -20.041 -0.534 2.573 20.213
hybrid contribution 1.509 -2.658 -0.164 3.061
sum -18.532 -3.192 2.408 18.959
Atomic orbital electron populations
1.21015 0.82752 1.06258 1.05740 1.23516 1.01504 0.87803 0.94924
1.72858 1.00288 1.26237 1.08034 1.73175 0.99364 1.25328 1.10925
1.21805 0.92331 0.88489 0.93658 1.61479 0.99892 1.54469 1.04341
1.23052 0.96079 0.96829 0.91689 1.22712 0.94345 0.98933 0.99300
1.19378 0.86110 0.82995 0.90335 1.86146 1.28029 1.39582 1.85631
1.21653 1.01452 1.15642 1.20671 0.93379 1.25583 0.96956 0.98752
0.95185 1.69792 1.12186 1.42092 1.30482 0.85566 0.78365 0.79358
0.78710 1.19953 1.19903 1.20370 1.23344 0.95287 0.95573 0.92049
1.17900 0.94119 0.89011 1.08580 1.24948 0.93598 0.92855 0.94802
1.81398 1.06554 1.12161 1.06920 1.21589 0.89870 1.00087 0.90198
1.21257 1.01896 0.89332 1.05795 0.87467 0.86550 0.89087 0.93757
0.89012 0.92035 0.93335 0.77504 0.91974 0.92570 0.90769 0.87004
0.91330 0.85105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.77 9.81 71.23 0.70 -0.07 16
2 C 0.07 1.32 6.86 42.60 0.29 1.62 16
3 N -0.23 -6.55 11.39 -47.74 -0.54 -7.10 16
4 N -0.25 -8.71 11.53 -54.58 -0.63 -9.34 16
5 C 0.28 9.95 5.94 133.60 0.79 10.74 16
6 N -0.48 -20.01 5.35 -688.04 -3.68 -23.69 16
7 C 0.05 2.03 6.01 86.45 0.52 2.55 16
8 C -0.11 -5.44 5.26 31.47 0.17 -5.27 16
9 C 0.25 12.93 0.95 -10.34 -0.01 12.92 16
10 O -0.59 -31.74 13.09 -148.98 -1.95 -33.69 16
11 C -0.56 -30.64 8.14 25.60 0.21 -30.43 16
12 H 0.05 2.70 7.78 -2.91 -0.02 2.68 16
13 C 0.04 1.97 5.28 84.65 0.45 2.42 16
14 N -0.91 -48.94 11.02 21.45 0.24 -48.71 16
15 Si 0.95 43.35 29.54 68.60 2.03 45.37 16
16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
19 C 0.06 2.93 5.29 86.65 0.46 3.39 16
20 C -0.08 -2.36 5.23 -20.96 -0.11 -2.47 16
21 C 0.25 8.54 8.57 88.33 0.76 9.30 16
22 N -0.39 -15.05 18.36 19.00 0.35 -14.71 16
23 C 0.00 -0.06 5.96 -19.36 -0.12 -0.17 16
24 C -0.13 -1.37 9.31 71.24 0.66 -0.70 16
25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16
26 H 0.12 0.16 6.04 -2.39 -0.01 0.14 16
27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
28 H 0.04 1.68 5.54 -2.39 -0.01 1.66 16
29 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16
30 H 0.06 3.05 7.99 -2.39 -0.02 3.03 16
31 H 0.05 2.47 7.84 -2.39 -0.02 2.45 16
32 H 0.38 20.43 7.48 -74.06 -0.55 19.87 16
33 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16
34 H 0.06 2.51 4.77 -2.38 -0.01 2.50 16
35 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16
36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16
37 H 0.07 0.95 7.26 -2.39 -0.02 0.93 16
38 H 0.13 0.39 6.06 -2.39 -0.01 0.37 16
Total: -1.00 -68.26 314.00 1.14 -67.11
By element:
Atomic # 1 Polarization: 20.38 SS G_CDS: 0.57 Total: 20.95 kcal
Atomic # 6 Polarization: -0.97 SS G_CDS: 4.77 Total: 3.80 kcal
Atomic # 7 Polarization: -99.28 SS G_CDS: -4.27 Total: -103.54 kcal
Atomic # 8 Polarization: -31.74 SS G_CDS: -1.95 Total: -33.69 kcal
Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -68.26 1.14 -67.11 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591977480.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.848 kcal
(2) G-P(sol) polarization free energy of solvation -68.257 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.736 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds