Wall clock time and date at job start Tue Mar 31 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48511 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47273 * 300.00356 * 3 2 1 6 6 H 1.48497 * 109.47130 * 60.00528 * 3 2 1 7 7 C 1.37878 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99835 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.77860 * 61.79865 * 9 7 2 11 11 C 1.54593 * 110.72583 * 298.55374 * 9 7 2 12 12 C 1.53997 * 105.13807 * 219.68092 * 11 9 7 13 13 N 1.47899 * 107.05889 * 358.77516 * 12 11 9 14 14 C 1.46897 * 111.00068 * 145.84368 * 13 12 11 15 15 C 1.50703 * 109.46987 * 290.12747 * 14 13 12 16 16 C 1.35452 * 126.42484 * 94.68833 * 15 14 13 17 17 N 1.33343 * 108.61295 * 179.86787 * 16 15 14 18 18 C 1.32304 * 109.13241 * 0.40086 * 17 16 15 19 19 C 1.40917 * 133.23617 * 179.73412 * 18 17 16 20 20 N 1.31140 * 119.69719 * 180.02562 * 19 18 17 21 21 C 1.33519 * 121.37080 * 359.97438 * 20 19 18 22 22 C 1.34994 * 121.25666 * 0.02562 * 21 20 19 23 23 N 1.36044 * 126.41581 * 274.99534 * 15 14 13 24 24 C 1.48538 * 105.82096 * 25.32759 * 13 12 11 25 25 H 0.96994 * 120.00103 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00523 * 298.20368 * 10 9 7 27 27 H 1.09004 * 110.30922 * 100.76438 * 11 9 7 28 28 H 1.08998 * 110.30989 * 338.59559 * 11 9 7 29 29 H 1.09004 * 109.91456 * 118.12612 * 12 11 9 30 30 H 1.09001 * 109.91811 * 239.22178 * 12 11 9 31 31 H 1.08999 * 109.47042 * 50.12329 * 14 13 12 32 32 H 1.08997 * 109.47330 * 170.12886 * 14 13 12 33 33 H 1.08008 * 125.69051 * 359.97438 * 16 15 14 34 34 H 1.07994 * 120.15454 * 0.04359 * 19 18 17 35 35 H 1.08005 * 119.37010 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.13384 * 180.02562 * 22 21 20 37 37 H 1.09007 * 110.66246 * 79.22764 * 24 13 12 38 38 H 1.08993 * 110.66671 * 202.18915 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6223 -1.1777 11 6 0.3795 -2.6277 1.2698 12 6 0.5074 -4.1015 1.6979 13 7 1.3770 -4.7679 0.7043 14 6 2.1990 -5.8077 1.3375 15 6 3.2343 -5.1607 2.2211 16 6 3.1268 -4.9326 3.5520 17 7 4.2471 -4.3463 3.9752 18 6 5.0664 -4.1848 2.9490 19 6 6.3547 -3.6284 2.8206 20 7 6.9375 -3.6034 1.6461 21 6 6.3357 -4.0965 0.5609 22 6 5.1021 -4.6402 0.6302 23 7 4.4499 -4.6909 1.8304 24 6 2.2271 -3.6957 0.1263 25 1 -0.4850 0.8400 0.0004 26 1 -0.2296 -1.9402 -1.2641 27 1 -0.6593 -2.3888 1.0417 28 1 0.7558 -1.9718 2.0548 29 1 0.9599 -4.1627 2.6876 30 1 -0.4760 -4.5715 1.7096 31 1 1.5632 -6.4575 1.9388 32 1 2.6961 -6.3972 0.5672 33 1 2.2762 -5.1852 4.1678 34 1 6.8599 -3.2246 3.6855 35 1 6.8457 -4.0596 -0.3904 36 1 4.6325 -5.0341 -0.2589 37 1 3.0493 -3.4519 0.7992 38 1 2.6068 -3.9912 -0.8517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:25 Heat of formation + Delta-G solvation = 71.743387 kcal Electronic energy + Delta-G solvation = -23806.487681 eV Core-core repulsion = 20457.932545 eV Total energy + Delta-G solvation = -3348.555137 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.16248 -38.80330 -38.11280 -35.11583 -34.13255 -32.17605 -31.29171 -30.36101 -28.79243 -28.14694 -25.92656 -24.58333 -23.90311 -22.90824 -21.43956 -20.18585 -19.53491 -18.00517 -17.38559 -17.22685 -16.25523 -15.74026 -15.39304 -14.96693 -14.79993 -14.51388 -14.31481 -13.78137 -13.56462 -13.41972 -12.89097 -12.70225 -12.35002 -12.21752 -11.84219 -11.37846 -11.29677 -11.21167 -10.98906 -10.74691 -10.47777 -10.42095 -10.23560 -9.97643 -9.86542 -9.24606 -8.92728 -8.65121 -8.26273 -8.08571 -7.85167 -6.26147 -4.34450 0.54111 1.22280 2.43603 2.84407 3.17734 3.26576 3.30980 3.59297 4.08067 4.22960 4.24883 4.30465 4.55600 4.71465 4.92087 5.02478 5.13562 5.23068 5.39300 5.49333 5.60393 5.69481 5.83852 5.90214 5.98271 6.07771 6.24550 6.35083 6.44140 6.53337 6.74944 6.79858 6.95880 7.27000 7.40855 7.44280 7.49278 7.60266 7.75591 7.81092 8.10325 8.67150 9.34592 9.47456 10.80956 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.007088 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.429945 B = 3949.355233 C = 4871.606193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.259 3.741 10 O -0.581 6.581 11 C -0.128 4.128 12 C 0.030 3.970 13 N -0.501 5.501 14 C 0.117 3.883 15 C -0.067 4.067 16 C 0.042 3.958 17 N -0.464 5.464 18 C 0.154 3.846 19 C 0.192 3.808 20 N -0.464 5.464 21 C 0.033 3.967 22 C 0.023 3.977 23 N -0.337 5.337 24 C 0.046 3.954 25 H 0.267 0.733 26 H 0.378 0.622 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.183 0.817 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.048 0.952 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -10.209 3.657 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.219 3.781 10 O -0.389 6.389 11 C -0.167 4.167 12 C -0.098 4.098 13 N -0.223 5.223 14 C -0.013 4.013 15 C -0.185 4.185 16 C -0.112 4.112 17 N -0.186 5.186 18 C -0.090 4.090 19 C 0.009 3.991 20 N -0.175 5.175 21 C -0.105 4.105 22 C -0.102 4.102 23 N -0.011 5.011 24 C -0.081 4.081 25 H 0.077 0.923 26 H 0.227 0.773 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.200 0.800 34 H 0.202 0.798 35 H 0.195 0.805 36 H 0.188 0.812 37 H 0.066 0.934 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.572 -10.360 3.580 13.322 hybrid contribution -0.551 1.328 0.037 1.438 sum 7.021 -9.032 3.617 11.998 Atomic orbital electron populations 1.69731 1.05863 1.27373 1.50187 1.24965 0.94977 0.99352 0.93637 0.86472 0.80200 0.83186 0.77809 1.19738 1.20643 1.20763 1.21544 0.93266 0.90822 1.51890 0.92618 1.19284 0.86551 0.90195 0.82086 1.86128 1.51430 1.56281 1.45047 1.22907 1.01921 0.91480 1.00353 1.22998 0.96573 0.96897 0.93301 1.65137 1.17341 1.11942 1.27830 1.21051 0.90404 0.95178 0.94644 1.22390 0.88022 1.10691 0.97422 1.22461 0.97050 1.00097 0.91627 1.70502 1.02434 1.18543 1.27109 1.22063 0.98174 1.05803 0.82997 1.22726 0.87003 0.92919 0.96419 1.68138 1.35139 1.15860 0.98394 1.22112 0.91816 0.98074 0.98542 1.22600 0.94949 1.03723 0.88896 1.42784 1.13224 1.36615 1.08498 1.23413 0.95413 0.91375 0.97909 0.92343 0.77261 0.91382 0.92202 0.94421 0.91455 0.88388 0.90266 0.80048 0.79785 0.80547 0.81232 0.93359 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 11.02 55.43 0.61 -23.27 16 2 C 0.07 1.96 5.28 -17.82 -0.09 1.87 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.54 -14.50 8.14 -34.44 -0.28 -14.78 16 8 H 0.06 1.54 7.78 -52.49 -0.41 1.13 16 9 C 0.26 6.39 0.95 -89.91 -0.09 6.30 16 10 O -0.58 -15.10 13.09 -35.23 -0.46 -15.56 16 11 C -0.13 -2.95 5.26 -25.37 -0.13 -3.08 16 12 C 0.03 0.56 6.46 -2.75 -0.02 0.54 16 13 N -0.50 -9.12 5.54 -231.89 -1.28 -10.41 16 14 C 0.12 1.66 5.95 -4.98 -0.03 1.63 16 15 C -0.07 -1.02 4.60 -81.72 -0.38 -1.39 16 16 C 0.04 0.65 10.42 -17.89 -0.19 0.46 16 17 N -0.46 -7.78 11.30 -12.72 -0.14 -7.92 16 18 C 0.15 2.47 7.85 -155.97 -1.22 1.25 16 19 C 0.19 2.67 11.34 -16.83 -0.19 2.48 16 20 N -0.46 -6.50 10.42 -13.13 -0.14 -6.64 16 21 C 0.03 0.42 11.07 -17.97 -0.20 0.22 16 22 C 0.02 0.31 9.17 -16.54 -0.15 0.15 16 23 N -0.34 -5.24 2.12 -58.49 -0.12 -5.36 16 24 C 0.05 0.97 4.50 -1.90 -0.01 0.96 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.38 9.94 7.48 45.56 0.34 10.28 16 27 H 0.07 1.64 7.99 -51.93 -0.41 1.23 16 28 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 29 H 0.04 0.65 5.79 -51.93 -0.30 0.35 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.18 2.26 7.88 -52.48 -0.41 1.84 16 34 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.17 1.97 7.69 -52.49 -0.40 1.56 16 37 H 0.05 1.03 4.35 -51.93 -0.23 0.80 16 38 H 0.07 1.42 8.00 -51.93 -0.42 1.00 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -30.85 308.92 -8.78 -39.63 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -3.89 Total: 12.26 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.98 Total: -3.40 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.08 Total: -53.60 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.46 Total: -15.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.85 -8.78 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.372 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds