Wall clock time and date at job start Tue Mar 31 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48511 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47273 * 300.00356 * 3 2 1 6 6 H 1.48497 * 109.47130 * 60.00528 * 3 2 1 7 7 C 1.37878 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99835 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.77860 * 61.79865 * 9 7 2 11 11 C 1.54593 * 110.72583 * 298.55374 * 9 7 2 12 12 C 1.53997 * 105.13807 * 219.68092 * 11 9 7 13 13 N 1.47899 * 107.05889 * 358.77516 * 12 11 9 14 14 C 1.46897 * 111.00068 * 145.84368 * 13 12 11 15 15 C 1.50703 * 109.46987 * 290.12747 * 14 13 12 16 16 C 1.35452 * 126.42484 * 94.68833 * 15 14 13 17 17 N 1.33343 * 108.61295 * 179.86787 * 16 15 14 18 18 C 1.32304 * 109.13241 * 0.40086 * 17 16 15 19 19 C 1.40917 * 133.23617 * 179.73412 * 18 17 16 20 20 N 1.31140 * 119.69719 * 180.02562 * 19 18 17 21 21 C 1.33519 * 121.37080 * 359.97438 * 20 19 18 22 22 C 1.34994 * 121.25666 * 0.02562 * 21 20 19 23 23 N 1.36044 * 126.41581 * 274.99534 * 15 14 13 24 24 C 1.48538 * 105.82096 * 25.32759 * 13 12 11 25 25 H 0.96994 * 120.00103 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00523 * 298.20368 * 10 9 7 27 27 H 1.09004 * 110.30922 * 100.76438 * 11 9 7 28 28 H 1.08998 * 110.30989 * 338.59559 * 11 9 7 29 29 H 1.09004 * 109.91456 * 118.12612 * 12 11 9 30 30 H 1.09001 * 109.91811 * 239.22178 * 12 11 9 31 31 H 1.08999 * 109.47042 * 50.12329 * 14 13 12 32 32 H 1.08997 * 109.47330 * 170.12886 * 14 13 12 33 33 H 1.08008 * 125.69051 * 359.97438 * 16 15 14 34 34 H 1.07994 * 120.15454 * 0.04359 * 19 18 17 35 35 H 1.08005 * 119.37010 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.13384 * 180.02562 * 22 21 20 37 37 H 1.09007 * 110.66246 * 79.22764 * 24 13 12 38 38 H 1.08993 * 110.66671 * 202.18915 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6223 -1.1777 11 6 0.3795 -2.6277 1.2698 12 6 0.5074 -4.1015 1.6979 13 7 1.3770 -4.7679 0.7043 14 6 2.1990 -5.8077 1.3375 15 6 3.2343 -5.1607 2.2211 16 6 3.1268 -4.9326 3.5520 17 7 4.2471 -4.3463 3.9752 18 6 5.0664 -4.1848 2.9490 19 6 6.3547 -3.6284 2.8206 20 7 6.9375 -3.6034 1.6461 21 6 6.3357 -4.0965 0.5609 22 6 5.1021 -4.6402 0.6302 23 7 4.4499 -4.6909 1.8304 24 6 2.2271 -3.6957 0.1263 25 1 -0.4850 0.8400 0.0004 26 1 -0.2296 -1.9402 -1.2641 27 1 -0.6593 -2.3888 1.0417 28 1 0.7558 -1.9718 2.0548 29 1 0.9599 -4.1627 2.6876 30 1 -0.4760 -4.5715 1.7096 31 1 1.5632 -6.4575 1.9388 32 1 2.6961 -6.3972 0.5672 33 1 2.2762 -5.1852 4.1678 34 1 6.8599 -3.2246 3.6855 35 1 6.8457 -4.0596 -0.3904 36 1 4.6325 -5.0341 -0.2589 37 1 3.0493 -3.4519 0.7992 38 1 2.6068 -3.9912 -0.8517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:24 Heat of formation + Delta-G solvation = 48.692472 kcal Electronic energy + Delta-G solvation = -23807.487244 eV Core-core repulsion = 20457.932545 eV Total energy + Delta-G solvation = -3349.554699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.27972 -40.23480 -39.37333 -36.81766 -35.30988 -34.23399 -32.73639 -31.46672 -30.16361 -29.88066 -27.45407 -26.02729 -25.23029 -24.06128 -22.70419 -21.70782 -21.24251 -19.18273 -19.09568 -18.45790 -17.57665 -17.10553 -16.93236 -16.61122 -16.07740 -15.96782 -15.72905 -15.25838 -14.87312 -14.75705 -14.37924 -13.86874 -13.82990 -13.68679 -13.41826 -13.24772 -12.97571 -12.67825 -12.52658 -12.42749 -12.32503 -12.23833 -11.71124 -11.38119 -11.16967 -11.01784 -10.67161 -10.17886 -10.02627 -9.51965 -9.06709 -8.29175 -6.44331 -0.50786 0.10545 1.30139 1.33981 1.36845 1.43226 1.72200 2.30230 2.50756 2.95339 3.01352 3.09884 3.26255 3.32547 3.65941 3.80131 3.89333 4.04889 4.11012 4.18595 4.28912 4.39943 4.44298 4.53152 4.64022 4.73290 4.80864 4.90445 5.04017 5.17475 5.20030 5.42958 5.43825 5.51012 5.67038 5.71397 5.81780 6.04366 6.17737 6.52289 6.60194 6.70452 7.27566 7.41752 8.76313 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.007088 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.429945 B = 3949.355233 C = 4871.606193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.034 3.966 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.041 0.959 9 C 0.240 3.760 10 O -0.587 6.587 11 C -0.120 4.120 12 C 0.039 3.961 13 N -0.504 5.504 14 C 0.120 3.880 15 C -0.078 4.078 16 C 0.033 3.967 17 N -0.490 5.490 18 C 0.133 3.867 19 C 0.186 3.814 20 N -0.474 5.474 21 C 0.033 3.967 22 C 0.006 3.994 23 N -0.342 5.342 24 C 0.061 3.939 25 H 0.270 0.730 26 H 0.372 0.628 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.205 0.795 34 H 0.209 0.791 35 H 0.209 0.791 36 H 0.188 0.812 37 H 0.045 0.955 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -11.137 3.684 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.204 1.204 7 C -0.597 4.597 8 H 0.059 0.941 9 C 0.200 3.800 10 O -0.395 6.395 11 C -0.160 4.160 12 C -0.089 4.089 13 N -0.225 5.225 14 C -0.009 4.009 15 C -0.196 4.196 16 C -0.121 4.121 17 N -0.212 5.212 18 C -0.111 4.111 19 C 0.004 3.996 20 N -0.185 5.185 21 C -0.105 4.105 22 C -0.117 4.117 23 N -0.016 5.016 24 C -0.067 4.067 25 H 0.079 0.921 26 H 0.220 0.780 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.115 0.885 33 H 0.222 0.778 34 H 0.226 0.774 35 H 0.225 0.775 36 H 0.205 0.795 37 H 0.063 0.937 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.100 -11.303 3.607 14.366 hybrid contribution -0.675 1.626 0.013 1.760 sum 7.426 -9.677 3.620 12.724 Atomic orbital electron populations 1.69798 1.06575 1.28076 1.50076 1.25593 0.95796 1.01921 0.93371 0.85642 0.78794 0.79985 0.78035 1.20129 1.19846 1.20365 1.21763 0.92793 0.92586 1.52604 0.94075 1.19538 0.87283 0.91035 0.82099 1.86120 1.51397 1.55956 1.46005 1.22688 1.00124 0.94228 0.98911 1.22914 0.98018 0.93908 0.94055 1.65091 1.17579 1.11428 1.28431 1.21219 0.90295 0.93993 0.95379 1.22557 0.88308 1.11115 0.97615 1.22951 0.97354 0.99635 0.92183 1.70475 1.03265 1.19569 1.27865 1.22448 0.98957 1.06358 0.83293 1.23201 0.86547 0.92554 0.97313 1.68210 1.35420 1.16126 0.98773 1.22701 0.91704 0.96724 0.99393 1.23016 0.95419 1.04363 0.88939 1.42955 1.13402 1.36291 1.08940 1.23141 0.94621 0.90824 0.98064 0.92098 0.77974 0.93235 0.94952 0.92802 0.89557 0.85329 0.88489 0.77786 0.77410 0.77479 0.79521 0.93724 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.93 11.02 21.45 0.24 -48.70 16 2 C 0.03 1.85 5.28 84.65 0.45 2.30 16 3 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.56 -30.57 8.14 25.60 0.21 -30.36 16 8 H 0.04 2.30 7.78 -2.91 -0.02 2.28 16 9 C 0.24 11.89 0.95 -10.34 -0.01 11.88 16 10 O -0.59 -30.72 13.09 -148.98 -1.95 -32.67 16 11 C -0.12 -5.58 5.26 31.47 0.17 -5.41 16 12 C 0.04 1.37 6.46 86.45 0.56 1.93 16 13 N -0.50 -17.23 5.54 -887.57 -4.91 -22.14 16 14 C 0.12 3.03 5.95 85.56 0.51 3.54 16 15 C -0.08 -2.21 4.60 41.26 0.19 -2.02 16 16 C 0.03 0.96 10.42 83.82 0.87 1.84 16 17 N -0.49 -16.00 11.30 -194.15 -2.19 -18.20 16 18 C 0.13 4.18 7.85 134.07 1.05 5.23 16 19 C 0.19 4.99 11.34 85.45 0.97 5.96 16 20 N -0.47 -12.64 10.42 -195.44 -2.04 -14.68 16 21 C 0.03 0.78 11.07 83.69 0.93 1.70 16 22 C 0.01 0.16 9.17 83.19 0.76 0.93 16 23 N -0.34 -10.16 2.12 -338.96 -0.72 -10.88 16 24 C 0.06 2.51 4.50 86.65 0.39 2.90 16 25 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.37 19.91 7.48 -74.06 -0.55 19.36 16 27 H 0.05 2.42 7.99 -2.39 -0.02 2.40 16 28 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 29 H 0.05 1.74 5.79 -2.39 -0.01 1.73 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.13 2.49 8.08 -2.39 -0.02 2.47 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.21 4.60 7.88 -2.91 -0.02 4.58 16 34 H 0.21 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.19 3.96 7.69 -2.91 -0.02 3.94 16 37 H 0.04 1.87 4.35 -2.38 -0.01 1.86 16 38 H 0.07 2.71 8.00 -2.39 -0.02 2.69 16 Total: -1.00 -66.24 308.92 -1.97 -68.20 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.54 Total: 33.39 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 7.04 Total: 0.41 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -9.63 Total: -114.59 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.95 Total: -32.67 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.24 -1.97 -68.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.896 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds