Wall clock time and date at job start Tue Mar 31 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00194 * 2 1 4 4 C 1.38755 * 120.05405 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94608 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05096 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11448 * 359.74040 * 6 5 4 8 8 C 1.38168 * 120.05348 * 0.51501 * 7 6 5 9 9 C 1.50702 * 120.02669 * 179.76487 * 8 7 6 10 10 N 1.46497 * 109.47236 * 264.72338 * 9 8 7 11 11 C 1.35313 * 125.86667 * 125.29282 * 10 9 8 12 12 C 1.35349 * 106.17218 * 180.18574 * 11 10 9 13 13 C 1.50697 * 126.75364 * 179.85517 * 12 11 10 14 14 N 1.46499 * 109.47276 * 94.71254 * 13 12 11 15 15 C 1.36935 * 119.99938 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46676 * 90.00727 * 19 17 15 21 21 H 1.48502 * 109.46977 * 210.00025 * 19 17 15 22 22 H 1.48494 * 109.47494 * 330.00753 * 19 17 15 23 23 N 1.33774 * 106.49914 * 359.59715 * 12 11 10 24 24 N 1.28635 * 108.88067 * 0.25663 * 23 12 11 25 25 H 1.09002 * 109.47162 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47090 * 299.99686 * 1 2 3 28 28 H 1.08001 * 120.02807 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.97281 * 179.97438 * 5 4 3 30 30 H 1.08007 * 119.93963 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.97117 * 180.25261 * 7 6 5 32 32 H 1.08997 * 109.46644 * 144.72092 * 9 8 7 33 33 H 1.09004 * 109.46850 * 24.72615 * 9 8 7 34 34 H 1.08001 * 126.91913 * 0.04070 * 11 10 9 35 35 H 1.09004 * 109.47205 * 334.71228 * 13 12 11 36 36 H 1.09005 * 109.47240 * 214.71438 * 13 12 11 37 37 H 0.96999 * 119.99984 * 0.02562 * 14 13 12 38 38 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0005 7 6 4.0560 2.5170 0.0049 8 6 3.4311 1.2847 -0.0010 9 6 4.2537 0.0220 -0.0016 10 7 4.4189 -0.4525 -1.3777 11 6 5.5969 -0.7131 -1.9904 12 6 5.2880 -1.1203 -3.2437 13 6 6.2567 -1.5255 -4.3246 14 7 6.4269 -2.9804 -4.3076 15 6 7.2667 -3.5821 -5.2064 16 1 7.8002 -2.9845 -5.9308 17 6 7.4284 -4.9607 -5.1900 18 7 6.7742 -5.6895 -4.3107 19 14 8.5734 -5.7815 -6.4166 20 1 9.9395 -5.8637 -5.8401 21 1 8.0795 -7.1496 -6.7160 22 1 8.6117 -4.9839 -7.6685 23 7 3.9534 -1.0979 -3.3323 24 7 3.4684 -0.6978 -2.2101 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3203 0.0005 29 1 1.3340 4.5114 0.0011 30 1 3.7922 4.6381 0.0014 31 1 5.1344 2.5751 0.0086 32 1 3.7469 -0.7420 0.5879 33 1 5.2326 0.2260 0.4325 34 1 6.5850 -0.6136 -1.5658 35 1 7.2192 -1.0450 -4.1488 36 1 5.8683 -1.2164 -5.2951 37 1 5.9448 -3.5176 -3.6596 38 1 6.8869 -6.6529 -4.2995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594647386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:45 Heat of formation + Delta-G solvation = 107.410580 kcal Electronic energy + Delta-G solvation = -21825.587423 eV Core-core repulsion = 18478.578932 eV Total energy + Delta-G solvation = -3347.008491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.76417 -40.46351 -37.70588 -35.32087 -34.34528 -31.84879 -31.45189 -30.42808 -29.71743 -27.73691 -26.86871 -25.64751 -22.83240 -22.50990 -22.39640 -21.28125 -20.28002 -18.33215 -17.31925 -16.81119 -16.75586 -16.16425 -15.82759 -15.49837 -14.78594 -14.55707 -14.41566 -14.10682 -13.70900 -13.49546 -13.07524 -12.95136 -12.79561 -12.47367 -12.30002 -11.85176 -11.74286 -11.36504 -11.25136 -11.03620 -10.81571 -10.73917 -10.28760 -10.03325 -9.76130 -9.57243 -9.31323 -8.81354 -8.66456 -8.46960 -6.84141 -5.67476 -2.96609 0.84645 1.13916 2.05317 2.70725 3.03826 3.09881 3.49762 3.52198 3.54697 3.57092 4.22221 4.32559 4.59120 4.68494 4.74979 4.80634 4.91287 4.95863 5.00971 5.06903 5.14870 5.31359 5.36464 5.44004 5.57168 5.60939 5.75262 5.91105 6.01748 6.10091 6.16967 6.26989 6.43191 6.55038 6.79235 6.88398 6.98075 7.11468 7.77101 8.50030 9.06121 9.61589 10.18713 10.54913 11.55433 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032352 B = 0.003101 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.266565 B = 9026.103717 C = 9473.545139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.300 6.300 3 C 0.168 3.832 4 C -0.216 4.216 5 C -0.067 4.067 6 C -0.165 4.165 7 C -0.058 4.058 8 C -0.151 4.151 9 C 0.170 3.830 10 N -0.293 5.293 11 C -0.050 4.050 12 C -0.008 4.008 13 C 0.234 3.766 14 N -0.726 5.726 15 C -0.238 4.238 16 H 0.073 0.927 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.909 3.091 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 N -0.263 5.263 24 N -0.079 5.079 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.186 0.814 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.386 0.614 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.916 20.057 15.261 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.212 6.212 3 C 0.121 3.879 4 C -0.234 4.234 5 C -0.085 4.085 6 C -0.184 4.184 7 C -0.077 4.077 8 C -0.153 4.153 9 C 0.049 3.951 10 N -0.087 5.087 11 C -0.200 4.200 12 C -0.146 4.146 13 C 0.105 3.895 14 N -0.371 5.371 15 C -0.369 4.369 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 N -0.130 5.130 24 N -0.058 5.058 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.204 0.796 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.219 0.781 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.257 19.800 14.920 27.228 hybrid contribution 1.310 -0.499 -0.072 1.403 sum -9.948 19.301 14.848 26.305 Atomic orbital electron populations 1.23085 0.78125 1.04342 1.01069 1.86174 1.21512 1.26038 1.87437 1.18810 0.91504 0.84734 0.92870 1.21260 1.00267 0.92261 1.09641 1.21015 0.94735 0.97047 0.95741 1.21017 0.93937 0.98345 1.05058 1.20931 1.00041 0.90928 0.95777 1.19039 0.90870 0.94784 1.10601 1.20615 1.01560 0.94501 0.78374 1.47321 1.05124 1.43768 1.12518 1.23385 0.92226 1.09370 0.95048 1.22419 0.92438 1.03769 0.95943 1.18918 0.91695 0.87087 0.91837 1.42320 1.53869 0.99759 1.41114 1.19245 1.17771 0.90242 1.09637 0.90926 1.24757 1.00621 0.96228 0.99430 1.69687 1.45532 1.05106 1.37778 0.86160 0.80254 0.78846 0.80752 1.21782 1.21838 1.20694 1.75108 1.08885 1.15324 1.13695 1.78311 1.15549 1.16703 0.95260 0.92406 0.87968 0.92876 0.85163 0.85649 0.85612 0.85120 0.87569 0.87112 0.79644 0.94618 0.94503 0.78092 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.30 -3.57 9.63 -19.42 -0.19 -3.76 16 3 C 0.17 1.90 6.65 -39.22 -0.26 1.64 16 4 C -0.22 -2.02 9.04 -39.43 -0.36 -2.38 16 5 C -0.07 -0.56 10.04 -39.60 -0.40 -0.95 16 6 C -0.17 -1.38 10.04 -39.56 -0.40 -1.77 16 7 C -0.06 -0.53 9.68 -39.60 -0.38 -0.91 16 8 C -0.15 -1.65 5.26 -104.47 -0.55 -2.20 16 9 C 0.17 1.87 6.31 -5.19 -0.03 1.84 16 10 N -0.29 -4.58 3.43 -62.44 -0.21 -4.80 16 11 C -0.05 -0.82 11.50 -17.05 -0.20 -1.01 16 12 C -0.01 -0.16 6.61 -82.78 -0.55 -0.71 16 13 C 0.23 5.17 6.82 -5.20 -0.04 5.14 16 14 N -0.73 -19.72 5.59 -61.08 -0.34 -20.06 16 15 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 16 H 0.07 2.01 7.83 -52.49 -0.41 1.59 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -29.37 13.06 55.49 0.72 -28.64 16 19 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.26 -5.76 12.41 33.29 0.41 -5.34 16 24 N -0.08 -1.52 12.92 60.35 0.78 -0.74 16 25 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 29 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.11 1.14 7.69 -51.93 -0.40 0.74 16 33 H 0.11 0.82 7.98 -51.93 -0.41 0.40 16 34 H 0.19 2.33 8.06 -52.49 -0.42 1.90 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.39 11.29 7.66 -40.82 -0.31 10.98 16 38 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -36.69 332.92 -6.00 -42.69 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.76 Total: 5.39 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.41 Total: -7.68 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 1.36 Total: -59.59 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.19 Total: -3.76 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.69 -6.00 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594647386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.105 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds