Wall clock time and date at job start Tue Mar 31 2020 02:44:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46494 * 109.47275 * 2 1
4 4 C 1.46493 * 120.00444 * 275.27738 * 3 2 1
5 5 C 1.50701 * 109.47177 * 274.72646 * 4 3 2
6 6 H 1.07996 * 119.99972 * 359.97438 * 5 4 3
7 7 C 1.37887 * 119.99644 * 179.97438 * 5 4 3
8 8 N 1.31511 * 119.99535 * 180.02562 * 7 5 4
9 9 Si 1.86797 * 120.00352 * 359.97438 * 7 5 4
10 10 H 1.48502 * 109.47016 * 89.99648 * 9 7 5
11 11 H 1.48490 * 109.47144 * 210.00167 * 9 7 5
12 12 H 1.48510 * 109.46829 * 330.00190 * 9 7 5
13 13 S 1.65608 * 119.99583 * 95.00419 * 3 2 1
14 14 O 1.42100 * 106.40059 * 203.54152 * 13 3 2
15 15 O 1.42096 * 106.40050 * 336.46185 * 13 3 2
16 16 N 1.65599 * 107.21718 * 90.00246 * 13 3 2
17 17 C 1.46501 * 120.00418 * 64.99891 * 16 13 3
18 18 C 1.52996 * 119.29720 * 250.52181 * 17 16 13
19 19 C 1.52994 * 60.37778 * 248.69122 * 18 17 16
20 20 H 1.09001 * 119.29951 * 111.30826 * 19 18 17
21 21 C 1.54268 * 118.68811 * 266.65115 * 19 18 17
22 22 C 1.54895 * 104.19192 * 87.82208 * 21 19 18
23 23 C 1.54262 * 117.41176 * 46.17192 * 17 16 13
24 24 H 1.08990 * 109.47196 * 59.99425 * 1 2 3
25 25 H 1.09005 * 109.47015 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.46714 * 299.99336 * 1 2 3
27 27 H 1.09005 * 109.47025 * 239.99991 * 2 1 3
28 28 H 1.09001 * 109.47382 * 120.01018 * 2 1 3
29 29 H 1.09004 * 109.46868 * 34.72321 * 4 3 2
30 30 H 1.09004 * 109.47439 * 154.72444 * 4 3 2
31 31 H 0.97001 * 119.99867 * 179.97438 * 8 7 5
32 32 H 0.97001 * 119.99869 * 244.99685 * 16 13 3
33 33 H 1.09002 * 117.46550 * 356.28781 * 18 17 16
34 34 H 1.08999 * 117.46282 * 141.09141 * 18 17 16
35 35 H 1.08992 * 110.49035 * 206.49881 * 21 19 18
36 36 H 1.08997 * 110.48921 * 329.15066 * 21 19 18
37 37 H 1.09003 * 110.75229 * 80.37887 * 22 21 19
38 38 H 1.08999 * 110.75336 * 203.74187 * 22 21 19
39 39 H 1.08995 * 110.49001 * 235.05455 * 23 17 16
40 40 H 1.09004 * 110.48603 * 357.69489 * 23 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.1526 2.1107 -1.2632
5 6 3.4890 1.7971 -1.8850
6 1 4.1705 1.1221 -1.3885
7 6 3.8418 2.3718 -3.0876
8 7 5.0078 2.0977 -3.6304
9 14 2.6628 3.5387 -3.9467
10 1 2.9213 4.9281 -3.4905
11 1 2.8649 3.4541 -5.4153
12 1 1.2648 3.1614 -3.6168
13 16 2.4123 2.1200 1.4288
14 8 2.3058 3.5184 1.2000
15 8 1.6870 1.4412 2.4448
16 7 4.0146 1.8135 1.7137
17 6 5.0352 2.3522 0.8114
18 6 5.8012 1.3982 -0.1073
19 6 6.5323 2.0864 1.0471
20 1 6.8759 1.4898 1.8921
21 6 7.2647 3.4160 0.7721
22 6 6.1791 4.4994 0.9890
23 6 4.9099 3.8341 0.4013
24 1 -0.3633 0.5139 -0.8898
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3633 0.5137 0.8901
27 1 1.8933 -0.5139 -0.8900
28 1 1.8934 -0.5140 0.8899
29 1 1.3558 1.8093 -1.9433
30 1 2.0825 3.1818 -1.0735
31 1 5.2559 2.5018 -4.4767
32 1 4.2773 1.2772 2.4781
33 1 5.5964 0.3322 -0.0083
34 1 6.0214 1.7421 -1.1180
35 1 8.0855 3.5522 1.4761
36 1 7.6320 3.4443 -0.2538
37 1 6.0492 4.7088 2.0509
38 1 6.4268 5.4093 0.4423
39 1 4.8969 3.9297 -0.6844
40 1 4.0124 4.2752 0.8348
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594806152.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:10
Heat of formation + Delta-G solvation = -46.445493 kcal
Electronic energy + Delta-G solvation = -23311.114107 eV
Core-core repulsion = 20060.585116 eV
Total energy + Delta-G solvation = -3250.528991 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 288.129 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-39.13651 -36.69365 -36.12396 -35.27745 -32.94045 -32.62418 -30.53381 -30.20397
-27.29486 -26.92410 -22.96784 -22.08866 -21.51163 -20.17092 -19.47116 -18.35830
-17.12486 -16.93067 -16.63327 -15.98995 -15.33184 -14.40327 -14.25166 -14.11027
-13.47029 -13.27541 -12.83439 -12.69043 -12.46699 -12.39414 -12.09346 -11.90788
-11.78335 -11.62860 -11.42200 -11.36274 -11.13251 -10.98017 -10.58869 -10.49020
-10.46801 -10.38756 -10.31332 -10.12508 -9.84605 -9.56881 -9.05798 -8.59569
-8.36675 -8.03963 -6.11999 -4.09614 1.26844 3.27046 3.33896 3.38820
3.47669 4.06946 4.22417 4.38700 4.98209 5.05713 5.19468 5.28579
5.34502 5.45155 5.60101 5.66725 5.70915 5.78650 5.89970 5.95468
6.03246 6.17959 6.24556 6.28581 6.34099 6.41368 6.52445 6.60248
6.68320 6.79133 6.90017 6.93497 7.10783 7.17514 7.22052 7.33882
7.57421 7.63244 8.47252 8.96556 9.49848 10.98497
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.011768 B = 0.011712 C = 0.007214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2378.795090 B = 2390.108110 C = 3880.394164
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.131 3.869
3 N -0.984 5.984
4 C 0.212 3.788
5 C -0.539 4.539
6 H 0.102 0.898
7 C 0.080 3.920
8 N -0.893 5.893
9 Si 0.859 3.141
10 H -0.274 1.274
11 H -0.288 1.288
12 H -0.266 1.266
13 S 2.791 3.209
14 O -0.979 6.979
15 O -1.002 7.002
16 N -1.092 6.092
17 C 0.115 3.885
18 C -0.118 4.118
19 C -0.185 4.185
20 H 0.098 0.902
21 C -0.092 4.092
22 C -0.120 4.120
23 C -0.116 4.116
24 H 0.058 0.942
25 H 0.059 0.941
26 H 0.054 0.946
27 H 0.082 0.918
28 H 0.064 0.936
29 H 0.033 0.967
30 H 0.041 0.959
31 H 0.263 0.737
32 H 0.405 0.595
33 H 0.088 0.912
34 H 0.130 0.870
35 H 0.059 0.941
36 H 0.071 0.929
37 H 0.059 0.941
38 H 0.065 0.935
39 H 0.094 0.906
40 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.432 -1.222 7.560 7.671
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.004 3.996
3 N -0.825 5.825
4 C 0.088 3.912
5 C -0.578 4.578
6 H 0.120 0.880
7 C -0.123 4.123
8 N -0.532 5.532
9 Si 0.686 3.314
10 H -0.199 1.199
11 H -0.214 1.214
12 H -0.191 1.191
13 S 2.800 3.200
14 O -0.962 6.962
15 O -0.986 6.986
16 N -0.847 5.847
17 C 0.026 3.974
18 C -0.157 4.157
19 C -0.205 4.205
20 H 0.116 0.884
21 C -0.129 4.129
22 C -0.158 4.158
23 C -0.155 4.155
24 H 0.077 0.923
25 H 0.078 0.922
26 H 0.073 0.927
27 H 0.101 0.899
28 H 0.082 0.918
29 H 0.051 0.949
30 H 0.059 0.941
31 H 0.073 0.927
32 H 0.238 0.762
33 H 0.106 0.894
34 H 0.148 0.852
35 H 0.078 0.922
36 H 0.090 0.910
37 H 0.078 0.922
38 H 0.084 0.916
39 H 0.113 0.887
40 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -0.140 -0.540 7.812 7.832
hybrid contribution -0.158 -0.027 -0.470 0.496
sum -0.299 -0.568 7.343 7.371
Atomic orbital electron populations
1.22220 0.97022 1.01518 1.02225 1.20983 0.93449 0.82698 1.02469
1.57451 1.78777 1.22818 1.23414 1.19608 0.98476 0.92016 0.81050
1.21834 1.00898 1.29055 1.06011 0.88036 1.24747 0.94805 0.95980
0.96762 1.69828 1.20438 1.44049 1.18855 0.87115 0.82578 0.82517
0.79167 1.19908 1.21366 1.19115 1.01574 0.72316 0.73729 0.72421
1.93481 1.85868 1.31160 1.85730 1.93546 1.70617 1.76378 1.58109
1.55271 1.24526 1.67901 1.37038 1.21174 0.85855 0.94179 0.96218
1.23605 0.97962 0.97263 0.96916 1.23757 0.93926 1.00155 1.02672
0.88392 1.21907 0.96922 0.92579 1.01541 1.22650 0.95128 0.97803
1.00234 1.22620 0.99467 0.90072 1.03330 0.92275 0.92197 0.92651
0.89934 0.91771 0.94884 0.94097 0.92674 0.76225 0.89387 0.85199
0.92223 0.90993 0.92191 0.91625 0.88720 0.87704
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.57 10.23 37.16 0.38 -2.19 16
2 C 0.13 2.18 6.06 -4.04 -0.02 2.16 16
3 N -0.98 -19.17 2.82 -115.67 -0.33 -19.50 16
4 C 0.21 4.69 4.50 -5.20 -0.02 4.67 16
5 C -0.54 -12.92 7.86 -34.44 -0.27 -13.19 16
6 H 0.10 2.47 4.58 -52.49 -0.24 2.22 16
7 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16
8 N -0.89 -23.73 13.88 55.43 0.77 -22.96 16
9 Si 0.86 19.91 27.47 -169.99 -4.67 15.24 16
10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16
13 S 2.79 53.92 6.08 -107.50 -0.65 53.27 16
14 O -0.98 -21.24 13.35 -57.17 -0.76 -22.00 16
15 O -1.00 -20.14 17.11 -57.17 -0.98 -21.11 16
16 N -1.09 -18.58 6.19 1.43 0.01 -18.57 16
17 C 0.12 2.07 2.38 -130.71 -0.31 1.76 16
18 C -0.12 -2.19 7.01 -26.74 -0.19 -2.38 16
19 C -0.18 -2.93 6.92 -89.51 -0.62 -3.55 16
20 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16
21 C -0.09 -1.37 6.64 -25.07 -0.17 -1.53 16
22 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16
23 C -0.12 -2.22 6.00 -25.08 -0.15 -2.37 16
24 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16
25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
27 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16
28 H 0.06 0.98 7.61 -51.93 -0.40 0.59 16
29 H 0.03 0.73 7.15 -51.93 -0.37 0.36 16
30 H 0.04 0.95 6.34 -51.93 -0.33 0.62 16
31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16
32 H 0.41 5.79 8.96 -34.47 -0.31 5.49 16
33 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16
34 H 0.13 2.83 7.43 -51.93 -0.39 2.45 16
35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
39 H 0.09 2.03 7.80 -51.93 -0.41 1.63 16
40 H 0.10 2.14 5.01 -51.93 -0.26 1.88 16
LS Contribution 322.16 15.07 4.85 4.85
Total: -1.00 -28.00 322.16 -9.48 -37.48
By element:
Atomic # 1 Polarization: 16.13 SS G_CDS: -6.09 Total: 10.05 kcal
Atomic # 6 Polarization: -15.11 SS G_CDS: -1.64 Total: -16.75 kcal
Atomic # 7 Polarization: -61.48 SS G_CDS: 0.45 Total: -61.03 kcal
Atomic # 8 Polarization: -41.38 SS G_CDS: -1.74 Total: -43.12 kcal
Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal
Atomic # 16 Polarization: 53.92 SS G_CDS: -0.65 Total: 53.27 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -28.00 -9.48 -37.48 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594806152.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.961 kcal
(2) G-P(sol) polarization free energy of solvation -28.000 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.961 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds