Wall clock time and date at job start Tue Mar 31 2020 02:44:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46494 * 109.47275 * 2 1
4 4 C 1.46493 * 120.00444 * 275.27738 * 3 2 1
5 5 C 1.50701 * 109.47177 * 274.72646 * 4 3 2
6 6 H 1.07996 * 119.99972 * 359.97438 * 5 4 3
7 7 C 1.37887 * 119.99644 * 179.97438 * 5 4 3
8 8 N 1.31511 * 119.99535 * 180.02562 * 7 5 4
9 9 Si 1.86797 * 120.00352 * 359.97438 * 7 5 4
10 10 H 1.48502 * 109.47016 * 89.99648 * 9 7 5
11 11 H 1.48490 * 109.47144 * 210.00167 * 9 7 5
12 12 H 1.48510 * 109.46829 * 330.00190 * 9 7 5
13 13 S 1.65608 * 119.99583 * 95.00419 * 3 2 1
14 14 O 1.42100 * 106.40059 * 203.54152 * 13 3 2
15 15 O 1.42096 * 106.40050 * 336.46185 * 13 3 2
16 16 N 1.65599 * 107.21718 * 90.00246 * 13 3 2
17 17 C 1.46501 * 120.00418 * 64.99891 * 16 13 3
18 18 C 1.52996 * 119.29720 * 250.52181 * 17 16 13
19 19 C 1.52994 * 60.37778 * 248.69122 * 18 17 16
20 20 H 1.09001 * 119.29951 * 111.30826 * 19 18 17
21 21 C 1.54268 * 118.68811 * 266.65115 * 19 18 17
22 22 C 1.54895 * 104.19192 * 87.82208 * 21 19 18
23 23 C 1.54262 * 117.41176 * 46.17192 * 17 16 13
24 24 H 1.08990 * 109.47196 * 59.99425 * 1 2 3
25 25 H 1.09005 * 109.47015 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.46714 * 299.99336 * 1 2 3
27 27 H 1.09005 * 109.47025 * 239.99991 * 2 1 3
28 28 H 1.09001 * 109.47382 * 120.01018 * 2 1 3
29 29 H 1.09004 * 109.46868 * 34.72321 * 4 3 2
30 30 H 1.09004 * 109.47439 * 154.72444 * 4 3 2
31 31 H 0.97001 * 119.99867 * 179.97438 * 8 7 5
32 32 H 0.97001 * 119.99869 * 244.99685 * 16 13 3
33 33 H 1.09002 * 117.46550 * 356.28781 * 18 17 16
34 34 H 1.08999 * 117.46282 * 141.09141 * 18 17 16
35 35 H 1.08992 * 110.49035 * 206.49881 * 21 19 18
36 36 H 1.08997 * 110.48921 * 329.15066 * 21 19 18
37 37 H 1.09003 * 110.75229 * 80.37887 * 22 21 19
38 38 H 1.08999 * 110.75336 * 203.74187 * 22 21 19
39 39 H 1.08995 * 110.49001 * 235.05455 * 23 17 16
40 40 H 1.09004 * 110.48603 * 357.69489 * 23 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.1526 2.1107 -1.2632
5 6 3.4890 1.7971 -1.8850
6 1 4.1705 1.1221 -1.3885
7 6 3.8418 2.3718 -3.0876
8 7 5.0078 2.0977 -3.6304
9 14 2.6628 3.5387 -3.9467
10 1 2.9213 4.9281 -3.4905
11 1 2.8649 3.4541 -5.4153
12 1 1.2648 3.1614 -3.6168
13 16 2.4123 2.1200 1.4288
14 8 2.3058 3.5184 1.2000
15 8 1.6870 1.4412 2.4448
16 7 4.0146 1.8135 1.7137
17 6 5.0352 2.3522 0.8114
18 6 5.8012 1.3982 -0.1073
19 6 6.5323 2.0864 1.0471
20 1 6.8759 1.4898 1.8921
21 6 7.2647 3.4160 0.7721
22 6 6.1791 4.4994 0.9890
23 6 4.9099 3.8341 0.4013
24 1 -0.3633 0.5139 -0.8898
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3633 0.5137 0.8901
27 1 1.8933 -0.5139 -0.8900
28 1 1.8934 -0.5140 0.8899
29 1 1.3558 1.8093 -1.9433
30 1 2.0825 3.1818 -1.0735
31 1 5.2559 2.5018 -4.4767
32 1 4.2773 1.2772 2.4781
33 1 5.5964 0.3322 -0.0083
34 1 6.0214 1.7421 -1.1180
35 1 8.0855 3.5522 1.4761
36 1 7.6320 3.4443 -0.2538
37 1 6.0492 4.7088 2.0509
38 1 6.4268 5.4093 0.4423
39 1 4.8969 3.9297 -0.6844
40 1 4.0124 4.2752 0.8348
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594806152.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:09
Heat of formation + Delta-G solvation = -65.250799 kcal
Electronic energy + Delta-G solvation = -23311.929566 eV
Core-core repulsion = 20060.585116 eV
Total energy + Delta-G solvation = -3251.344450 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 288.129 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.52041 -38.28928 -37.68211 -36.89594 -34.52528 -34.29682 -31.92463 -31.73306
-28.88843 -28.40324 -24.57188 -23.46766 -23.07981 -21.60736 -20.83845 -19.88022
-18.77888 -18.49472 -18.36452 -17.44955 -16.87796 -16.09666 -15.73268 -15.67600
-14.86075 -14.69245 -14.44395 -14.14251 -14.09382 -13.86699 -13.71000 -13.46511
-13.27320 -13.14065 -13.02365 -12.84224 -12.73839 -12.57646 -12.20427 -12.07228
-11.94303 -11.75913 -11.70739 -11.61948 -11.40928 -11.23099 -10.62399 -10.48955
-9.81210 -9.63499 -8.09293 -6.07581 -0.27324 1.38860 1.45324 1.48925
1.95950 2.45234 2.57375 2.82843 3.23966 3.45840 3.68549 3.90360
4.00602 4.09104 4.23891 4.39041 4.43095 4.48856 4.57772 4.66441
4.70861 4.84943 4.96811 4.99646 5.04418 5.07130 5.07998 5.21703
5.28643 5.38600 5.41233 5.51617 5.53351 5.56661 5.64373 5.73442
5.85569 6.26151 6.52617 7.02247 7.53162 9.02183
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.011768 B = 0.011712 C = 0.007214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2378.795090 B = 2390.108110 C = 3880.394164
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.121 3.879
3 N -0.988 5.988
4 C 0.218 3.782
5 C -0.524 4.524
6 H 0.096 0.904
7 C 0.041 3.959
8 N -0.923 5.923
9 Si 0.894 3.106
10 H -0.279 1.279
11 H -0.289 1.289
12 H -0.255 1.255
13 S 2.800 3.200
14 O -1.004 7.004
15 O -1.008 7.008
16 N -1.079 6.079
17 C 0.102 3.898
18 C -0.132 4.132
19 C -0.153 4.153
20 H 0.129 0.871
21 C -0.091 4.091
22 C -0.115 4.115
23 C -0.122 4.122
24 H 0.053 0.947
25 H 0.089 0.911
26 H 0.047 0.953
27 H 0.081 0.919
28 H 0.081 0.919
29 H 0.036 0.964
30 H 0.028 0.972
31 H 0.260 0.740
32 H 0.420 0.580
33 H 0.090 0.910
34 H 0.093 0.907
35 H 0.094 0.906
36 H 0.059 0.941
37 H 0.077 0.923
38 H 0.073 0.927
39 H 0.059 0.941
40 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.653 -1.795 9.217 9.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.004 4.004
3 N -0.828 5.828
4 C 0.094 3.906
5 C -0.563 4.563
6 H 0.114 0.886
7 C -0.159 4.159
8 N -0.563 5.563
9 Si 0.721 3.279
10 H -0.205 1.205
11 H -0.216 1.216
12 H -0.179 1.179
13 S 2.809 3.191
14 O -0.988 6.988
15 O -0.992 6.992
16 N -0.838 5.838
17 C 0.012 3.988
18 C -0.172 4.172
19 C -0.173 4.173
20 H 0.147 0.853
21 C -0.129 4.129
22 C -0.153 4.153
23 C -0.161 4.161
24 H 0.072 0.928
25 H 0.108 0.892
26 H 0.066 0.934
27 H 0.100 0.900
28 H 0.099 0.901
29 H 0.054 0.946
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.256 0.744
33 H 0.109 0.891
34 H 0.111 0.889
35 H 0.112 0.888
36 H 0.078 0.922
37 H 0.096 0.904
38 H 0.092 0.908
39 H 0.078 0.922
40 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 0.053 -1.134 9.491 9.559
hybrid contribution -0.216 0.119 -0.950 0.981
sum -0.163 -1.016 8.541 8.603
Atomic orbital electron populations
1.22203 0.95615 1.03327 1.01555 1.21245 0.94713 0.81237 1.03255
1.57418 1.79255 1.23883 1.22284 1.19368 0.97440 0.91648 0.82180
1.22024 1.01323 1.27664 1.05311 0.88580 1.25215 0.95664 0.97275
0.97726 1.69925 1.21733 1.45484 1.19207 0.86529 0.82028 0.81039
0.78275 1.20499 1.21552 1.17913 1.01184 0.72683 0.73082 0.72142
1.93458 1.86421 1.32897 1.86024 1.93533 1.71166 1.76320 1.58168
1.54947 1.23454 1.67993 1.37376 1.21099 0.87508 0.93371 0.96837
1.23366 1.00327 0.97430 0.96040 1.23914 0.91977 0.99953 1.01469
0.85299 1.21958 0.97515 0.91547 1.01869 1.22652 0.93402 0.98135
1.01113 1.22547 1.00793 0.91528 1.01200 0.92804 0.89204 0.93417
0.90030 0.90110 0.94571 0.95399 0.93046 0.74409 0.89116 0.88884
0.88782 0.92236 0.90395 0.90820 0.92227 0.89257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.74 10.23 71.98 0.74 -4.00 16
2 C 0.12 3.86 6.06 86.38 0.52 4.38 16
3 N -0.99 -37.77 2.82 -519.86 -1.47 -39.24 16
4 C 0.22 9.65 4.50 85.63 0.39 10.04 16
5 C -0.52 -25.41 7.86 25.60 0.20 -25.21 16
6 H 0.10 4.74 4.58 -2.91 -0.01 4.72 16
7 C 0.04 2.09 5.47 84.66 0.46 2.55 16
8 N -0.92 -50.32 13.88 21.45 0.30 -50.02 16
9 Si 0.89 41.24 27.47 68.60 1.88 43.13 16
10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16
12 H -0.26 -11.18 6.54 99.48 0.65 -10.53 16
13 S 2.80 105.63 6.08 -56.49 -0.34 105.29 16
14 O -1.00 -43.54 13.35 -128.00 -1.71 -45.25 16
15 O -1.01 -38.81 17.11 -128.00 -2.19 -41.00 16
16 N -1.08 -35.02 6.19 -149.37 -0.92 -35.94 16
17 C 0.10 3.55 2.38 4.32 0.01 3.56 16
18 C -0.13 -4.85 7.01 30.59 0.21 -4.64 16
19 C -0.15 -4.46 6.92 -10.07 -0.07 -4.53 16
20 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16
21 C -0.09 -2.49 6.64 31.67 0.21 -2.28 16
22 C -0.12 -3.41 6.91 31.89 0.22 -3.19 16
23 C -0.12 -4.66 6.00 31.67 0.19 -4.47 16
24 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16
25 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16
26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
27 H 0.08 2.61 8.11 -2.38 -0.02 2.60 16
28 H 0.08 2.30 7.61 -2.39 -0.02 2.28 16
29 H 0.04 1.58 7.15 -2.39 -0.02 1.56 16
30 H 0.03 1.32 6.34 -2.39 -0.02 1.30 16
31 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16
32 H 0.42 10.93 8.96 -96.74 -0.87 10.07 16
33 H 0.09 3.21 8.11 -2.39 -0.02 3.20 16
34 H 0.09 4.18 7.43 -2.39 -0.02 4.16 16
35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.06 2.66 7.80 -2.39 -0.02 2.64 16
40 H 0.09 3.68 5.01 -2.39 -0.01 3.67 16
Total: -1.00 -60.19 322.16 -1.25 -61.43
By element:
Atomic # 1 Polarization: 29.26 SS G_CDS: 0.12 Total: 29.38 kcal
Atomic # 6 Polarization: -30.86 SS G_CDS: 3.09 Total: -27.77 kcal
Atomic # 7 Polarization: -123.11 SS G_CDS: -2.10 Total: -125.21 kcal
Atomic # 8 Polarization: -82.35 SS G_CDS: -3.90 Total: -86.25 kcal
Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.13 kcal
Atomic # 16 Polarization: 105.63 SS G_CDS: -0.34 Total: 105.29 kcal
Total: -60.19 -1.25 -61.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594806152.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.817 kcal
(2) G-P(sol) polarization free energy of solvation -60.188 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.434 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds