Wall clock time and date at job start Tue Mar 31 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46956 * 2 1 4 4 N 1.31571 * 118.99633 * 270.02731 * 3 2 1 5 5 C 1.33429 * 120.89551 * 179.97438 * 4 3 2 6 6 C 1.43204 * 120.51648 * 180.02562 * 5 4 3 7 7 N 5.83672 * 105.57038 * 322.15900 * 2 1 3 8 8 C 1.39289 * 118.95878 * 359.71893 * 5 4 3 9 9 C 1.39664 * 118.18536 * 0.53583 * 8 5 4 10 10 N 1.38545 * 120.49578 * 179.73582 * 9 8 5 11 11 C 1.48720 * 111.01636 * 64.21713 * 10 9 8 12 12 C 1.54381 * 104.51692 * 158.96160 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 O 1.42910 * 110.32027 * 241.04997 * 13 12 11 15 15 C 1.50695 * 110.32879 * 118.94622 * 13 12 11 16 16 H 1.07997 * 120.00075 * 241.45186 * 15 13 12 17 17 C 1.37884 * 119.99868 * 61.44756 * 15 13 12 18 18 N 1.31515 * 119.99923 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99830 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.46911 * 60.00244 * 19 17 15 21 21 H 1.48498 * 109.46700 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47265 * 300.00135 * 19 17 15 23 23 C 1.48567 * 110.99697 * 179.72563 * 10 9 8 24 24 N 1.31833 * 118.99163 * 89.99812 * 3 2 1 25 25 H 1.09003 * 109.46558 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46822 * 299.99649 * 1 2 3 27 27 H 1.09000 * 109.46917 * 60.00199 * 1 2 3 28 28 H 1.08997 * 109.47521 * 240.00617 * 2 1 3 29 29 H 1.08992 * 109.47496 * 120.00032 * 2 1 3 30 30 H 1.07999 * 120.90741 * 180.27199 * 8 5 4 31 31 H 1.09004 * 110.38960 * 40.24127 * 11 10 9 32 32 H 1.08996 * 110.50963 * 277.74570 * 11 10 9 33 33 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 34 34 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 35 35 H 0.96699 * 114.00154 * 298.54485 * 14 13 12 36 36 H 0.97005 * 119.99855 * 179.97438 * 18 17 15 37 37 H 1.08999 * 110.41133 * 82.17794 * 23 10 9 38 38 H 1.09004 * 110.50861 * 319.79245 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2444 2.0224 -1.1508 5 6 2.6884 3.2799 -1.1950 6 6 2.9159 3.9269 -2.4521 7 7 3.0967 4.4402 -3.4493 8 6 2.9209 3.9554 0.0007 9 6 2.6874 3.2760 1.1984 10 7 2.9081 3.9003 2.4154 11 6 1.9864 5.0529 2.5985 12 6 1.9573 5.2866 4.1242 13 6 2.3532 3.9321 4.7472 14 8 1.2943 3.4349 5.5679 15 6 3.6168 4.0770 5.5555 16 1 4.4997 3.5184 5.2821 17 6 3.6456 4.9228 6.6440 18 7 2.5703 5.6027 6.9771 19 14 5.2122 5.1029 7.6456 20 1 6.3030 5.6050 6.7721 21 1 4.9830 6.0639 8.7542 22 1 5.5954 3.7826 8.2068 23 6 2.5875 2.9912 3.5459 24 7 2.2453 2.0233 1.1531 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2761 4.9753 0.0016 31 1 0.9900 4.8042 2.2330 32 1 2.3711 5.9347 2.0861 33 1 0.9553 5.5723 4.4445 34 1 2.6769 6.0563 4.4031 35 1 1.0725 4.0085 6.3142 36 1 2.5905 6.1975 7.7432 37 1 3.4245 2.3220 3.7447 38 1 1.6859 2.4175 3.3307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596285490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:43 Heat of formation + Delta-G solvation = 43.656966 kcal Electronic energy + Delta-G solvation = -22549.336705 eV Core-core repulsion = 19199.563649 eV Total energy + Delta-G solvation = -3349.773055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40847 -38.73805 -36.97696 -35.55271 -34.28616 -33.06810 -32.19177 -30.96350 -29.13453 -28.28296 -25.84241 -24.94121 -24.29992 -22.31209 -20.80549 -19.70376 -19.16895 -17.60968 -17.15207 -16.18443 -15.69299 -15.53515 -14.91971 -14.65164 -14.57432 -14.07521 -13.96782 -13.73848 -13.53738 -13.29850 -13.13596 -12.51472 -12.46583 -12.15406 -11.89789 -11.87684 -11.35641 -11.35093 -11.17272 -10.98469 -10.81141 -10.65204 -10.58262 -10.47157 -10.08675 -9.74347 -9.48133 -9.17375 -8.65498 -8.34748 -8.26283 -6.26209 -4.32711 0.35519 0.87914 2.21851 2.69215 3.09937 3.23094 3.27792 3.31508 3.57179 3.77615 3.97876 4.28381 4.50504 4.77494 4.95606 5.02906 5.12881 5.18114 5.19365 5.36484 5.52716 5.56531 5.75675 5.78754 5.88054 5.94201 5.96205 6.08899 6.16402 6.47081 6.54514 6.67526 6.84863 6.96305 7.08997 7.20502 7.37637 7.43597 7.74548 8.01701 8.08146 8.69888 9.31619 9.41404 10.81159 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.004369 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.390294 B = 6407.615552 C = 7090.768713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C 0.354 3.646 4 N -0.518 5.518 5 C 0.252 3.748 6 C 0.274 3.726 7 N -0.382 5.382 8 C -0.194 4.194 9 C 0.372 3.628 10 N -0.443 5.443 11 C 0.044 3.956 12 C -0.124 4.124 13 C 0.248 3.752 14 O -0.590 6.590 15 C -0.525 4.525 16 H 0.063 0.937 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.063 3.937 24 N -0.531 5.531 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.384 0.616 36 H 0.268 0.732 37 H 0.085 0.915 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -4.927 -10.484 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C 0.084 3.916 4 N -0.237 5.237 5 C 0.107 3.893 6 C -0.044 4.044 7 N -0.059 5.059 8 C -0.223 4.223 9 C 0.129 3.871 10 N -0.160 5.160 11 C -0.081 4.081 12 C -0.162 4.162 13 C 0.208 3.792 14 O -0.399 6.399 15 C -0.563 4.563 16 H 0.081 0.919 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.063 4.063 24 N -0.252 5.252 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.175 0.825 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.731 -5.204 -12.232 13.571 hybrid contribution 0.602 1.211 1.312 1.885 sum -2.128 -3.993 -10.919 11.820 Atomic orbital electron populations 1.21697 0.93401 1.02569 1.02587 1.20399 0.96915 0.87546 1.04505 1.23017 0.89779 0.96767 0.82003 1.68138 1.16165 1.08272 1.31141 1.16283 0.96074 0.90013 0.86883 1.24783 0.94379 0.93386 0.91873 1.81243 1.06730 1.08400 1.09487 1.22283 1.05636 1.03407 0.90956 1.20514 0.85773 0.88722 0.92045 1.62184 1.45373 1.09103 0.99322 1.23365 0.92367 0.91218 1.01111 1.22979 1.01717 1.02262 0.89271 1.19270 0.86403 0.86620 0.86904 1.86101 1.55932 1.53371 1.44498 1.21593 0.97256 1.25437 1.12019 0.91905 1.24993 0.96744 0.94567 0.97000 1.69668 1.28212 1.28173 1.27874 0.86518 0.83177 0.78044 0.79493 1.20111 1.21231 1.20087 1.23009 1.01188 0.94226 0.87852 1.68382 1.15154 1.11245 1.30392 0.91383 0.91972 0.92393 0.89041 0.88619 0.82481 0.93540 0.90070 0.91962 0.89874 0.76527 0.92238 0.89665 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.56 6.36 -27.88 -0.18 -0.74 16 3 C 0.35 4.80 6.89 -157.35 -1.08 3.72 16 4 N -0.52 -7.08 10.27 -8.79 -0.09 -7.17 16 5 C 0.25 3.31 6.61 -84.85 -0.56 2.75 16 6 C 0.27 3.53 15.59 -22.47 -0.35 3.18 16 7 N -0.38 -5.35 18.54 41.84 0.78 -4.57 16 8 C -0.19 -2.58 9.36 -38.66 -0.36 -2.94 16 9 C 0.37 5.90 6.17 -154.82 -0.96 4.95 16 10 N -0.44 -7.95 5.40 -168.47 -0.91 -8.86 16 11 C 0.04 0.75 6.08 -2.09 -0.01 0.73 16 12 C -0.12 -2.57 5.55 -25.35 -0.14 -2.71 16 13 C 0.25 5.73 1.05 -90.39 -0.10 5.63 16 14 O -0.59 -14.37 12.94 -35.23 -0.46 -14.83 16 15 C -0.52 -13.33 8.10 -34.44 -0.28 -13.61 16 16 H 0.06 1.62 7.54 -52.49 -0.40 1.22 16 17 C 0.07 1.73 5.02 -17.82 -0.09 1.64 16 18 N -0.90 -22.73 10.81 55.43 0.60 -22.13 16 19 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.06 1.29 5.21 -2.18 -0.01 1.28 16 24 N -0.53 -8.33 8.46 -10.00 -0.08 -8.42 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.30 7.98 -51.93 -0.41 0.88 16 34 H 0.08 1.89 7.24 -51.93 -0.38 1.51 16 35 H 0.38 9.46 7.32 45.56 0.33 9.79 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.08 1.81 7.68 -51.93 -0.40 1.41 16 38 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -26.65 327.22 -8.14 -34.78 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.13 Total: 8.35 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -3.75 Total: 2.92 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.29 Total: -51.14 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.46 Total: -14.83 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.65 -8.14 -34.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596285490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.440 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds