Wall clock time and date at job start Tue Mar 31 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46956 * 2 1 4 4 N 1.31571 * 118.99633 * 270.02731 * 3 2 1 5 5 C 1.33429 * 120.89551 * 179.97438 * 4 3 2 6 6 C 1.43204 * 120.51648 * 180.02562 * 5 4 3 7 7 N 5.83672 * 105.57038 * 322.15900 * 2 1 3 8 8 C 1.39289 * 118.95878 * 359.71893 * 5 4 3 9 9 C 1.39664 * 118.18536 * 0.53583 * 8 5 4 10 10 N 1.38545 * 120.49578 * 179.73582 * 9 8 5 11 11 C 1.48720 * 111.01636 * 64.21713 * 10 9 8 12 12 C 1.54381 * 104.51692 * 158.96160 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 O 1.42910 * 110.32027 * 241.04997 * 13 12 11 15 15 C 1.50695 * 110.32879 * 118.94622 * 13 12 11 16 16 H 1.07997 * 120.00075 * 241.45186 * 15 13 12 17 17 C 1.37884 * 119.99868 * 61.44756 * 15 13 12 18 18 N 1.31515 * 119.99923 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99830 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.46911 * 60.00244 * 19 17 15 21 21 H 1.48498 * 109.46700 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47265 * 300.00135 * 19 17 15 23 23 C 1.48567 * 110.99697 * 179.72563 * 10 9 8 24 24 N 1.31833 * 118.99163 * 89.99812 * 3 2 1 25 25 H 1.09003 * 109.46558 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46822 * 299.99649 * 1 2 3 27 27 H 1.09000 * 109.46917 * 60.00199 * 1 2 3 28 28 H 1.08997 * 109.47521 * 240.00617 * 2 1 3 29 29 H 1.08992 * 109.47496 * 120.00032 * 2 1 3 30 30 H 1.07999 * 120.90741 * 180.27199 * 8 5 4 31 31 H 1.09004 * 110.38960 * 40.24127 * 11 10 9 32 32 H 1.08996 * 110.50963 * 277.74570 * 11 10 9 33 33 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 34 34 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 35 35 H 0.96699 * 114.00154 * 298.54485 * 14 13 12 36 36 H 0.97005 * 119.99855 * 179.97438 * 18 17 15 37 37 H 1.08999 * 110.41133 * 82.17794 * 23 10 9 38 38 H 1.09004 * 110.50861 * 319.79245 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2444 2.0224 -1.1508 5 6 2.6884 3.2799 -1.1950 6 6 2.9159 3.9269 -2.4521 7 7 3.0967 4.4402 -3.4493 8 6 2.9209 3.9554 0.0007 9 6 2.6874 3.2760 1.1984 10 7 2.9081 3.9003 2.4154 11 6 1.9864 5.0529 2.5985 12 6 1.9573 5.2866 4.1242 13 6 2.3532 3.9321 4.7472 14 8 1.2943 3.4349 5.5679 15 6 3.6168 4.0770 5.5555 16 1 4.4997 3.5184 5.2821 17 6 3.6456 4.9228 6.6440 18 7 2.5703 5.6027 6.9771 19 14 5.2122 5.1029 7.6456 20 1 6.3030 5.6050 6.7721 21 1 4.9830 6.0639 8.7542 22 1 5.5954 3.7826 8.2068 23 6 2.5875 2.9912 3.5459 24 7 2.2453 2.0233 1.1531 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2761 4.9753 0.0016 31 1 0.9900 4.8042 2.2330 32 1 2.3711 5.9347 2.0861 33 1 0.9553 5.5723 4.4445 34 1 2.6769 6.0563 4.4031 35 1 1.0725 4.0085 6.3142 36 1 2.5905 6.1975 7.7432 37 1 3.4245 2.3220 3.7447 38 1 1.6859 2.4175 3.3307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596285490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:43 Heat of formation + Delta-G solvation = 26.509018 kcal Electronic energy + Delta-G solvation = -22550.080296 eV Core-core repulsion = 19199.563649 eV Total energy + Delta-G solvation = -3350.516646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.55891 -40.20886 -38.06886 -37.14879 -35.27234 -34.37475 -34.12588 -32.05111 -30.57377 -29.88530 -27.30512 -26.04284 -25.70571 -23.53618 -22.05601 -21.39297 -20.26910 -19.07104 -18.81737 -17.51032 -16.93526 -16.79246 -16.57740 -16.01248 -15.77457 -15.58265 -15.02176 -14.89500 -14.68874 -14.44244 -14.32241 -14.11702 -14.01504 -13.49992 -13.27544 -13.11018 -12.99190 -12.71540 -12.51937 -12.38165 -12.26672 -12.06859 -11.94830 -11.89253 -11.70893 -11.01703 -10.86397 -10.58254 -10.55925 -10.14058 -9.65636 -8.18100 -6.30658 -0.72479 -0.24587 1.17271 1.44959 1.46779 1.53394 1.62497 1.99426 2.41858 2.42871 2.67292 2.88206 3.10138 3.35577 3.67082 3.83258 3.89889 4.15086 4.21753 4.24011 4.31866 4.39610 4.41221 4.58413 4.61004 4.80386 4.99030 5.02021 5.05227 5.07019 5.16053 5.24515 5.38220 5.49517 5.65367 5.78099 5.85090 5.95036 6.04605 6.20704 6.73218 6.91031 7.37742 7.46792 8.87345 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.004369 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.390294 B = 6407.615552 C = 7090.768713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C 0.349 3.651 4 N -0.519 5.519 5 C 0.257 3.743 6 C 0.291 3.709 7 N -0.397 5.397 8 C -0.181 4.181 9 C 0.355 3.645 10 N -0.449 5.449 11 C 0.052 3.948 12 C -0.115 4.115 13 C 0.232 3.768 14 O -0.599 6.599 15 C -0.546 4.546 16 H 0.050 0.950 17 C 0.033 3.967 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.078 3.922 24 N -0.550 5.550 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.379 0.621 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -5.012 -11.924 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 C 0.081 3.919 4 N -0.237 5.237 5 C 0.112 3.888 6 C -0.027 4.027 7 N -0.073 5.073 8 C -0.209 4.209 9 C 0.113 3.887 10 N -0.167 5.167 11 C -0.072 4.072 12 C -0.154 4.154 13 C 0.192 3.808 14 O -0.407 6.407 15 C -0.584 4.584 16 H 0.068 0.932 17 C -0.167 4.167 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.203 1.203 23 C -0.049 4.049 24 N -0.271 5.271 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.198 0.802 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.580 -5.300 -13.697 14.912 hybrid contribution 0.526 1.176 1.713 2.143 sum -2.054 -4.124 -11.985 12.840 Atomic orbital electron populations 1.21665 0.92577 1.03822 1.01618 1.20568 0.97474 0.85764 1.05556 1.23593 0.89245 0.97815 0.81293 1.68200 1.15861 1.08499 1.31140 1.16281 0.95743 0.89884 0.86879 1.24553 0.93836 0.92868 0.91462 1.81275 1.07249 1.08914 1.09907 1.22378 1.04573 1.04207 0.89768 1.20519 0.87112 0.89234 0.91841 1.62193 1.46278 1.08828 0.99399 1.23328 0.93304 0.92209 0.98381 1.22714 1.00398 1.00138 0.92135 1.19509 0.85337 0.88607 0.87372 1.86094 1.56388 1.53676 1.44574 1.21797 0.97852 1.25713 1.13038 0.93151 1.25562 0.99084 0.94344 0.97725 1.69738 1.29175 1.28177 1.27991 0.85697 0.80371 0.77741 0.78294 1.19946 1.20696 1.20347 1.22670 1.00250 0.93885 0.88053 1.68357 1.15614 1.11446 1.31661 0.89072 0.93668 0.92532 0.87167 0.88348 0.80159 0.92372 0.87029 0.92620 0.92154 0.77115 0.92176 0.91230 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.61 16 2 C -0.05 -1.02 6.36 29.85 0.19 -0.83 16 3 C 0.35 8.91 6.89 138.81 0.96 9.86 16 4 N -0.52 -13.03 10.27 -181.72 -1.87 -14.90 16 5 C 0.26 6.14 6.61 40.40 0.27 6.40 16 6 C 0.29 6.81 15.59 88.33 1.38 8.19 16 7 N -0.40 -10.26 18.54 19.00 0.35 -9.91 16 8 C -0.18 -4.37 9.36 22.87 0.21 -4.16 16 9 C 0.35 10.73 6.17 133.19 0.82 11.55 16 10 N -0.45 -15.72 5.40 -686.93 -3.71 -19.43 16 11 C 0.05 1.69 6.08 86.42 0.53 2.22 16 12 C -0.12 -4.79 5.55 31.49 0.17 -4.61 16 13 C 0.23 10.84 1.05 -10.65 -0.01 10.83 16 14 O -0.60 -29.79 12.94 -148.98 -1.93 -31.72 16 15 C -0.55 -28.20 8.10 25.60 0.21 -27.99 16 16 H 0.05 2.66 7.54 -2.91 -0.02 2.63 16 17 C 0.03 1.69 5.02 84.66 0.43 2.11 16 18 N -0.91 -46.40 10.81 21.45 0.23 -46.17 16 19 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 C 0.08 3.23 5.21 86.45 0.45 3.68 16 24 N -0.55 -16.67 8.46 -185.54 -1.57 -18.24 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.06 1.75 7.97 -2.38 -0.02 1.73 16 32 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.06 2.34 7.98 -2.39 -0.02 2.32 16 34 H 0.06 2.76 7.24 -2.39 -0.02 2.74 16 35 H 0.38 19.16 7.32 -74.06 -0.54 18.62 16 36 H 0.27 13.16 8.31 -92.70 -0.77 12.39 16 37 H 0.07 3.03 7.68 -2.39 -0.02 3.01 16 38 H 0.06 2.58 7.11 -2.39 -0.02 2.56 16 Total: -1.00 -56.77 327.22 0.41 -56.36 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.56 Total: 25.21 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.31 Total: 15.65 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -6.56 Total: -108.64 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.93 Total: -31.72 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -56.77 0.41 -56.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596285490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.872 kcal (2) G-P(sol) polarization free energy of solvation -56.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds