Wall clock time and date at job start Tue Mar 31 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47499 * 2 1 4 4 N 1.31580 * 118.99197 * 269.98360 * 3 2 1 5 5 C 1.33428 * 120.89489 * 180.02562 * 4 3 2 6 6 C 1.43198 * 120.52032 * 180.02562 * 5 4 3 7 7 N 5.83666 * 105.60893 * 322.14647 * 2 1 3 8 8 C 1.39295 * 118.96020 * 359.97438 * 5 4 3 9 9 C 1.39660 * 118.18609 * 359.97438 * 8 5 4 10 10 N 1.38548 * 120.50222 * 180.02562 * 9 8 5 11 11 C 1.47447 * 110.99911 * 59.85088 * 10 9 8 12 12 C 1.54309 * 107.23326 * 123.25852 * 11 10 9 13 13 C 1.55140 * 103.02194 * 22.28581 * 12 11 10 14 14 O 1.42897 * 110.99212 * 82.47136 * 13 12 11 15 15 C 1.50694 * 110.99458 * 206.25694 * 13 12 11 16 16 H 1.08002 * 120.00465 * 118.54052 * 15 13 12 17 17 C 1.37878 * 119.99790 * 298.54378 * 15 13 12 18 18 N 1.31513 * 119.99881 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00187 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46753 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47338 * 119.99484 * 19 17 15 22 22 H 1.48500 * 109.47025 * 240.00055 * 19 17 15 23 23 C 1.47838 * 111.00120 * 180.69469 * 10 9 8 24 24 N 1.31829 * 118.99475 * 89.99790 * 3 2 1 25 25 H 1.09004 * 109.46939 * 299.99936 * 1 2 3 26 26 H 1.08997 * 109.46982 * 60.00005 * 1 2 3 27 27 H 1.08995 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46830 * 239.99320 * 2 1 3 29 29 H 1.09005 * 109.46822 * 119.99739 * 2 1 3 30 30 H 1.08000 * 120.91022 * 180.02562 * 8 5 4 31 31 H 1.08998 * 109.89008 * 242.66803 * 11 10 9 32 32 H 1.09005 * 109.88304 * 3.85423 * 11 10 9 33 33 H 1.08994 * 110.70790 * 140.66770 * 12 11 10 34 34 H 1.09002 * 110.70944 * 263.72835 * 12 11 10 35 35 H 0.96694 * 114.00060 * 61.45747 * 14 13 12 36 36 H 0.97008 * 119.99841 * 180.02562 * 18 17 15 37 37 H 1.09001 * 110.37450 * 332.46746 * 23 10 9 38 38 H 1.09005 * 110.37441 * 94.80921 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2453 2.0219 -1.1509 5 6 2.6904 3.2789 -1.1952 6 6 2.9189 3.9256 -2.4523 7 7 3.1005 4.4386 -3.4495 8 6 2.9283 3.9527 0.0005 9 6 2.6875 3.2760 1.1982 10 7 2.9074 3.9006 2.4153 11 6 2.0721 5.1084 2.5479 12 6 1.2299 4.9433 3.8302 13 6 2.0462 3.9130 4.6543 14 8 3.1068 4.5526 5.3671 15 6 1.1536 3.1451 5.5948 16 1 1.0605 2.0736 5.4970 17 6 0.4556 3.8106 6.5802 18 7 0.5693 5.1153 6.6997 19 14 -0.6503 2.8587 7.7466 20 1 -0.6040 1.4144 7.4045 21 1 -0.1814 3.0526 9.1422 22 1 -2.0451 3.3525 7.6198 23 6 2.6020 2.9912 3.5402 24 7 2.2454 2.0232 1.1531 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2884 4.9710 0.0014 31 1 2.7067 5.9907 2.6319 32 1 1.4158 5.2021 1.6826 33 1 1.1525 5.8899 4.3650 34 1 0.2397 4.5538 3.5936 35 1 2.8081 5.2108 6.0093 36 1 0.0785 5.5835 7.3932 37 1 1.8509 2.2593 3.2434 38 1 3.5084 2.4898 3.8797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596285492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:46 Heat of formation + Delta-G solvation = 26.292836 kcal Electronic energy + Delta-G solvation = -22656.680389 eV Core-core repulsion = 19306.154369 eV Total energy + Delta-G solvation = -3350.526020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.57250 -40.22942 -38.05756 -37.04081 -35.25942 -34.27367 -34.15494 -32.05078 -30.59126 -30.05470 -27.34502 -26.02025 -25.70546 -23.53481 -21.85291 -21.51255 -20.24846 -19.20498 -18.63027 -17.34519 -17.07631 -16.87090 -16.57042 -16.14939 -15.81136 -15.59024 -14.95535 -14.74025 -14.58222 -14.51237 -14.40502 -14.13499 -13.94351 -13.61657 -13.19539 -13.10702 -12.90631 -12.71658 -12.66135 -12.38134 -12.22539 -12.15618 -11.93657 -11.84456 -11.62079 -11.16381 -10.78618 -10.60906 -10.55397 -10.09763 -9.53736 -8.21044 -6.34947 -0.70871 -0.21094 1.17680 1.41480 1.46468 1.55814 1.63655 2.01190 2.38831 2.45352 2.70519 2.94345 3.05408 3.36894 3.67426 3.82405 3.93112 4.07456 4.18429 4.25286 4.33597 4.39906 4.40963 4.59219 4.73023 4.77495 4.98266 5.05834 5.10959 5.14835 5.18401 5.31061 5.39214 5.48259 5.55709 5.79251 5.86364 5.97440 6.04628 6.16988 6.69749 6.93985 7.36043 7.45783 8.84684 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.004686 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.509276 B = 5974.316999 C = 6919.746391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C 0.351 3.649 4 N -0.521 5.521 5 C 0.258 3.742 6 C 0.291 3.709 7 N -0.397 5.397 8 C -0.187 4.187 9 C 0.360 3.640 10 N -0.466 5.466 11 C 0.058 3.942 12 C -0.135 4.135 13 C 0.235 3.765 14 O -0.587 6.587 15 C -0.557 4.557 16 H 0.055 0.945 17 C 0.036 3.964 18 N -0.908 5.908 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.279 1.279 23 C 0.072 3.928 24 N -0.552 5.552 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.180 0.820 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.375 0.625 36 H 0.269 0.731 37 H 0.087 0.913 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -4.520 -11.265 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 C 0.082 3.918 4 N -0.240 5.240 5 C 0.113 3.887 6 C -0.027 4.027 7 N -0.074 5.074 8 C -0.216 4.216 9 C 0.118 3.882 10 N -0.182 5.182 11 C -0.067 4.067 12 C -0.174 4.174 13 C 0.195 3.805 14 O -0.395 6.395 15 C -0.595 4.595 16 H 0.073 0.927 17 C -0.165 4.165 18 N -0.548 5.548 19 Si 0.780 3.220 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.054 4.054 24 N -0.273 5.273 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.197 0.803 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.013 -4.713 -12.998 13.864 hybrid contribution -1.219 0.619 1.698 2.180 sum -0.206 -4.094 -11.300 12.021 Atomic orbital electron populations 1.21669 0.92753 1.03783 1.01577 1.20559 0.97328 0.85845 1.05580 1.23565 0.89146 0.97755 0.81292 1.68201 1.16173 1.08530 1.31101 1.16284 0.95658 0.89914 0.86872 1.24566 0.93818 0.92854 0.91466 1.81274 1.07284 1.08947 1.09879 1.22364 1.05178 1.04211 0.89835 1.20494 0.86799 0.89308 0.91648 1.60438 1.49642 1.08008 1.00090 1.23016 0.94211 0.90710 0.98757 1.23087 0.97720 1.01628 0.94953 1.19772 0.83826 0.88635 0.88284 1.86141 1.36549 1.59275 1.57526 1.21753 1.26962 0.94499 1.16303 0.92694 1.25586 0.97039 0.95768 0.98140 1.69793 1.43097 1.07796 1.34072 0.85563 0.78529 0.79129 0.78733 1.19556 1.20659 1.20485 1.22940 1.00582 0.94314 0.87531 1.68254 1.15912 1.11563 1.31551 0.93794 0.92561 0.89087 0.87112 0.88290 0.80267 0.88409 0.90710 0.90947 0.93263 0.77639 0.92180 0.89513 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.90 71.98 0.71 -1.82 16 2 C -0.05 -1.05 6.36 29.85 0.19 -0.86 16 3 C 0.35 9.19 6.89 138.80 0.96 10.15 16 4 N -0.52 -13.41 10.27 -181.73 -1.87 -15.27 16 5 C 0.26 6.27 6.61 40.40 0.27 6.53 16 6 C 0.29 6.91 15.59 88.33 1.38 8.29 16 7 N -0.40 -10.36 18.54 19.00 0.35 -10.01 16 8 C -0.19 -4.59 8.88 22.87 0.20 -4.38 16 9 C 0.36 11.00 6.15 133.19 0.82 11.82 16 10 N -0.47 -16.20 5.20 -691.18 -3.59 -19.79 16 11 C 0.06 1.89 6.49 86.64 0.56 2.45 16 12 C -0.13 -5.60 5.37 31.77 0.17 -5.43 16 13 C 0.23 10.90 0.87 -10.15 -0.01 10.90 16 14 O -0.59 -28.82 13.16 -148.98 -1.96 -30.78 16 15 C -0.56 -28.45 8.27 25.60 0.21 -28.23 16 16 H 0.05 2.84 7.79 -2.91 -0.02 2.81 16 17 C 0.04 1.80 5.29 84.66 0.45 2.24 16 18 N -0.91 -45.84 10.75 21.45 0.23 -45.61 16 19 Si 0.95 40.44 29.54 68.60 2.03 42.47 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.07 2.97 5.56 86.78 0.48 3.46 16 24 N -0.55 -17.04 8.20 -185.54 -1.52 -18.56 16 25 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.18 3.47 8.04 -2.91 -0.02 3.44 16 31 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.07 2.10 7.17 -2.38 -0.02 2.08 16 33 H 0.07 3.20 7.54 -2.39 -0.02 3.18 16 34 H 0.05 2.13 8.04 -2.39 -0.02 2.12 16 35 H 0.37 18.64 7.56 -74.06 -0.56 18.08 16 36 H 0.27 12.96 8.31 -92.70 -0.77 12.19 16 37 H 0.09 3.60 6.48 -2.39 -0.02 3.59 16 38 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -55.81 327.11 0.60 -55.22 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.54 Total: 27.23 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.39 Total: 15.12 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -6.40 Total: -109.25 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.96 Total: -30.78 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -55.81 0.60 -55.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596285492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.511 kcal (2) G-P(sol) polarization free energy of solvation -55.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds