Wall clock time and date at job start Tue Mar 31 2020 03:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47116 * 299.99761 * 3 2 1 6 6 H 1.48507 * 109.47240 * 59.99299 * 3 2 1 7 7 C 1.37880 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99626 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46882 * 179.97438 * 9 7 2 11 11 C 1.46963 * 110.99595 * 66.17766 * 10 9 7 12 12 C 1.53056 * 109.35944 * 183.16796 * 11 10 9 13 13 N 1.46956 * 109.38342 * 301.62902 * 12 11 10 14 14 C 1.38399 * 110.99994 * 183.17807 * 13 12 11 15 15 C 1.36485 * 120.24112 * 0.02562 * 14 13 12 16 16 N 1.32994 * 121.00162 * 179.97438 * 15 14 13 17 17 C 1.31350 * 121.38206 * 359.97438 * 16 15 14 18 18 C 1.40551 * 119.84331 * 0.02562 * 17 16 15 19 19 N 1.32644 * 133.77620 * 180.02562 * 18 17 16 20 20 C 1.32554 * 109.70682 * 179.97438 * 19 18 17 21 21 N 1.31355 * 109.66684 * 359.97438 * 20 19 18 22 22 N 1.36344 * 120.23747 * 179.72640 * 14 13 12 23 23 C 1.46962 * 110.87987 * 59.31148 * 13 12 11 24 24 C 1.46956 * 111.00102 * 189.99751 * 10 9 7 25 25 H 0.97005 * 119.99643 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47655 * 59.99702 * 9 7 2 27 27 H 1.08997 * 109.47272 * 299.99391 * 9 7 2 28 28 H 1.08992 * 109.47287 * 63.21185 * 11 10 9 29 29 H 1.08994 * 109.50466 * 303.13858 * 11 10 9 30 30 H 1.09002 * 109.48813 * 181.65179 * 12 11 10 31 31 H 1.09002 * 109.48870 * 61.61068 * 12 11 10 32 32 H 1.07998 * 119.49668 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.07504 * 180.02562 * 17 16 15 34 34 H 1.08002 * 125.16890 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.48625 * 60.64585 * 23 13 12 36 36 H 1.09003 * 109.48941 * 180.69193 * 23 13 12 37 37 H 1.09002 * 109.48806 * 56.84348 * 24 10 9 38 38 H 1.09003 * 109.49203 * 296.77991 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9690 -3.6558 1.2557 12 6 4.0042 -4.7810 1.1842 13 7 3.3194 -6.0593 0.9460 14 6 4.2188 -7.1112 0.9460 15 6 5.5480 -6.8792 1.1512 16 7 6.4253 -7.8787 1.1548 17 6 6.0468 -9.1217 0.9622 18 6 4.6891 -9.4139 0.7463 19 7 4.0152 -10.5354 0.5283 20 6 2.7260 -10.2618 0.3864 21 7 2.5326 -8.9683 0.5081 22 7 3.7825 -8.3876 0.7470 23 6 2.5563 -6.0188 -0.3093 24 6 1.5209 -4.8940 -0.2376 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.2899 -3.8388 2.0883 29 1 3.4773 -2.7030 1.4031 30 1 4.5518 -4.8317 2.1253 31 1 4.7000 -4.5837 0.3687 32 1 5.8926 -5.8686 1.3131 33 1 6.7772 -9.9172 0.9698 34 1 1.9521 -10.9915 0.1991 35 1 3.2355 -5.8354 -1.1419 36 1 2.0487 -6.9720 -0.4572 37 1 0.9732 -4.8433 -1.1787 38 1 0.8253 -5.0915 0.5780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:03 Heat of formation + Delta-G solvation = 166.926311 kcal Electronic energy + Delta-G solvation = -22654.251197 eV Core-core repulsion = 19342.116253 eV Total energy + Delta-G solvation = -3312.134944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.21419 -40.17049 -38.46323 -35.93538 -33.67276 -32.58302 -31.71515 -31.08815 -29.83270 -27.96210 -25.65260 -24.88255 -24.17823 -22.99386 -22.06824 -21.56714 -19.76396 -18.65235 -18.01356 -17.14187 -16.74073 -16.40874 -15.94861 -15.10035 -15.02308 -14.74726 -14.63023 -14.21694 -13.85738 -13.67815 -13.47416 -13.18792 -12.51354 -12.23853 -12.12031 -11.77174 -11.46908 -11.21007 -11.04538 -10.92333 -10.68700 -10.64662 -10.51624 -10.33656 -10.21935 -9.92754 -9.60419 -9.29501 -8.54075 -8.07671 -7.48031 -6.12722 -4.15259 0.23312 0.59590 1.51177 2.39555 3.05747 3.24532 3.26672 3.32592 3.36055 3.56278 3.87636 4.16191 4.32322 4.40425 4.58411 4.67501 4.88136 5.09090 5.10438 5.22990 5.26906 5.41842 5.46646 5.58996 5.67244 5.71071 5.81931 6.05192 6.09330 6.15892 6.27159 6.37732 6.52329 6.63335 7.11262 7.18864 7.33332 7.59671 7.65105 7.89802 8.01458 8.36979 8.91820 9.49780 10.98074 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.034430 B = 0.003593 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.041141 B = 7790.372113 C = 8468.425636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.065 3.935 12 C 0.051 3.949 13 N -0.476 5.476 14 C 0.326 3.674 15 C -0.043 4.043 16 N -0.394 5.394 17 C 0.108 3.892 18 C 0.252 3.748 19 N -0.531 5.531 20 C 0.236 3.764 21 N -0.323 5.323 22 N -0.281 5.281 23 C 0.059 3.941 24 C 0.057 3.943 25 H 0.262 0.738 26 H 0.032 0.968 27 H -0.006 1.006 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.191 0.809 34 H 0.230 0.770 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -16.815 1.695 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.075 4.075 13 N -0.191 5.191 14 C 0.112 3.888 15 C -0.194 4.194 16 N -0.105 5.105 17 C -0.074 4.074 18 C -0.005 4.005 19 N -0.263 5.263 20 C -0.065 4.065 21 N -0.154 5.154 22 N -0.063 5.063 23 C -0.066 4.066 24 C -0.072 4.072 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.012 0.988 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.209 0.791 33 H 0.208 0.792 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.879 -16.332 1.718 18.669 hybrid contribution -0.759 0.735 0.131 1.065 sum 8.120 -15.597 1.849 17.681 Atomic orbital electron populations 1.69969 1.06113 1.26846 1.50641 1.25000 0.94870 0.99418 0.95260 0.86433 0.80031 0.83318 0.77589 1.19604 1.20970 1.21061 1.21149 0.93483 0.89791 1.50556 0.91737 1.19734 0.89943 0.87015 0.96428 1.62369 1.28448 1.02779 1.32768 1.22064 0.95324 0.97053 0.91905 1.22754 0.97229 0.85383 1.02103 1.58423 1.23068 1.02944 1.34639 1.19933 0.91377 0.81744 0.95708 1.22570 0.84867 1.00754 1.11214 1.67876 1.36709 0.99059 1.06859 1.22567 0.88990 0.94741 1.01109 1.23092 0.94316 0.83928 0.99136 1.70812 1.04311 1.24065 1.27095 1.26378 0.93668 0.92188 0.94234 1.78592 0.97062 1.09678 1.30034 1.47868 1.07738 1.06393 1.44284 1.22548 0.96388 1.01445 0.86181 1.22091 0.94278 0.89286 1.01569 0.92852 0.94967 0.98798 0.94676 0.88062 0.89156 0.91254 0.79061 0.79186 0.75444 0.92499 0.88709 0.89878 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.58 8.47 -34.44 -0.29 -13.87 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.78 4.72 -4.98 -0.02 4.75 16 10 N -0.54 -10.71 4.70 -235.91 -1.11 -11.82 16 11 C 0.07 1.13 5.43 -3.76 -0.02 1.11 16 12 C 0.05 0.68 4.28 -3.76 -0.02 0.66 16 13 N -0.48 -6.78 4.77 -172.90 -0.83 -7.61 16 14 C 0.33 4.32 6.45 -153.08 -0.99 3.34 16 15 C -0.04 -0.50 9.91 -17.68 -0.18 -0.67 16 16 N -0.39 -4.42 10.41 -12.94 -0.13 -4.55 16 17 C 0.11 1.12 11.32 -16.89 -0.19 0.93 16 18 C 0.25 3.18 7.92 -156.24 -1.24 1.94 16 19 N -0.53 -6.63 11.24 -13.96 -0.16 -6.78 16 20 C 0.24 2.65 12.98 -91.87 -1.19 1.46 16 21 N -0.32 -4.46 10.96 29.28 0.32 -4.14 16 22 N -0.28 -3.90 3.79 -11.60 -0.04 -3.94 16 23 C 0.06 0.88 5.46 -3.76 -0.02 0.86 16 24 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 27 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.83 6.79 -51.93 -0.35 1.48 16 30 H 0.09 0.96 7.15 -51.93 -0.37 0.59 16 31 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 32 H 0.19 1.80 5.67 -52.49 -0.30 1.50 16 33 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.23 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.42 6.15 -51.93 -0.32 1.10 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -31.24 311.54 -10.43 -41.66 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.61 Total: -1.09 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -4.27 Total: 2.90 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -1.21 Total: -63.95 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.24 -10.43 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.589 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds