Wall clock time and date at job start Tue Mar 31 2020 03:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47116 * 299.99761 * 3 2 1 6 6 H 1.48507 * 109.47240 * 59.99299 * 3 2 1 7 7 C 1.37880 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99626 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46882 * 179.97438 * 9 7 2 11 11 C 1.46963 * 110.99595 * 66.17766 * 10 9 7 12 12 C 1.53056 * 109.35944 * 183.16796 * 11 10 9 13 13 N 1.46956 * 109.38342 * 301.62902 * 12 11 10 14 14 C 1.38399 * 110.99994 * 183.17807 * 13 12 11 15 15 C 1.36485 * 120.24112 * 0.02562 * 14 13 12 16 16 N 1.32994 * 121.00162 * 179.97438 * 15 14 13 17 17 C 1.31350 * 121.38206 * 359.97438 * 16 15 14 18 18 C 1.40551 * 119.84331 * 0.02562 * 17 16 15 19 19 N 1.32644 * 133.77620 * 180.02562 * 18 17 16 20 20 C 1.32554 * 109.70682 * 179.97438 * 19 18 17 21 21 N 1.31355 * 109.66684 * 359.97438 * 20 19 18 22 22 N 1.36344 * 120.23747 * 179.72640 * 14 13 12 23 23 C 1.46962 * 110.87987 * 59.31148 * 13 12 11 24 24 C 1.46956 * 111.00102 * 189.99751 * 10 9 7 25 25 H 0.97005 * 119.99643 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47655 * 59.99702 * 9 7 2 27 27 H 1.08997 * 109.47272 * 299.99391 * 9 7 2 28 28 H 1.08992 * 109.47287 * 63.21185 * 11 10 9 29 29 H 1.08994 * 109.50466 * 303.13858 * 11 10 9 30 30 H 1.09002 * 109.48813 * 181.65179 * 12 11 10 31 31 H 1.09002 * 109.48870 * 61.61068 * 12 11 10 32 32 H 1.07998 * 119.49668 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.07504 * 180.02562 * 17 16 15 34 34 H 1.08002 * 125.16890 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.48625 * 60.64585 * 23 13 12 36 36 H 1.09003 * 109.48941 * 180.69193 * 23 13 12 37 37 H 1.09002 * 109.48806 * 56.84348 * 24 10 9 38 38 H 1.09003 * 109.49203 * 296.77991 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9690 -3.6558 1.2557 12 6 4.0042 -4.7810 1.1842 13 7 3.3194 -6.0593 0.9460 14 6 4.2188 -7.1112 0.9460 15 6 5.5480 -6.8792 1.1512 16 7 6.4253 -7.8787 1.1548 17 6 6.0468 -9.1217 0.9622 18 6 4.6891 -9.4139 0.7463 19 7 4.0152 -10.5354 0.5283 20 6 2.7260 -10.2618 0.3864 21 7 2.5326 -8.9683 0.5081 22 7 3.7825 -8.3876 0.7470 23 6 2.5563 -6.0188 -0.3093 24 6 1.5209 -4.8940 -0.2376 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.2899 -3.8388 2.0883 29 1 3.4773 -2.7030 1.4031 30 1 4.5518 -4.8317 2.1253 31 1 4.7000 -4.5837 0.3687 32 1 5.8926 -5.8686 1.3131 33 1 6.7772 -9.9172 0.9698 34 1 1.9521 -10.9915 0.1991 35 1 3.2355 -5.8354 -1.1419 36 1 2.0487 -6.9720 -0.4572 37 1 0.9732 -4.8433 -1.1787 38 1 0.8253 -5.0915 0.5780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:02 Heat of formation + Delta-G solvation = 145.861534 kcal Electronic energy + Delta-G solvation = -22655.164634 eV Core-core repulsion = 19342.116253 eV Total energy + Delta-G solvation = -3313.048382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.12626 -41.24443 -39.53622 -37.29497 -34.99196 -34.26683 -32.66540 -32.33986 -30.99371 -29.49633 -27.17818 -25.92944 -25.27863 -24.15018 -23.63339 -22.74610 -21.09198 -19.61994 -18.91473 -18.49362 -18.20846 -17.66588 -16.85987 -16.68488 -16.16443 -16.09055 -15.78977 -15.49836 -15.34802 -15.13396 -14.45589 -14.18590 -14.01101 -13.68166 -13.35437 -13.06629 -12.89082 -12.77071 -12.62832 -12.42866 -12.31377 -12.15520 -11.80441 -11.50376 -11.28772 -11.24008 -11.13006 -10.66001 -10.58479 -9.17839 -9.02239 -8.21710 -6.32172 -0.66058 -0.31313 0.62033 1.42745 1.43848 1.51665 1.56787 2.07458 2.35221 2.39972 2.72662 2.99152 3.08886 3.15328 3.33451 3.47993 3.71006 3.78591 3.88945 4.07082 4.19358 4.22391 4.32904 4.45785 4.53480 4.70461 4.72882 4.88640 4.90376 4.97799 5.04337 5.16142 5.19170 5.25978 5.46673 5.59349 5.65863 5.99447 6.20383 6.45493 6.48692 6.69866 6.83689 7.38156 8.89923 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.034430 B = 0.003593 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.041141 B = 7790.372113 C = 8468.425636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.065 3.935 12 C 0.062 3.938 13 N -0.489 5.489 14 C 0.299 3.701 15 C -0.027 4.027 16 N -0.403 5.403 17 C 0.127 3.873 18 C 0.237 3.763 19 N -0.541 5.541 20 C 0.239 3.761 21 N -0.357 5.357 22 N -0.290 5.290 23 C 0.075 3.925 24 C 0.060 3.940 25 H 0.264 0.736 26 H 0.004 0.996 27 H -0.038 1.038 28 H 0.020 0.980 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.213 0.787 33 H 0.226 0.774 34 H 0.266 0.734 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.700 -17.712 1.927 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.063 4.063 12 C -0.064 4.064 13 N -0.204 5.204 14 C 0.088 3.912 15 C -0.177 4.177 16 N -0.114 5.114 17 C -0.054 4.054 18 C -0.020 4.020 19 N -0.273 5.273 20 C -0.060 4.060 21 N -0.188 5.188 22 N -0.072 5.072 23 C -0.050 4.050 24 C -0.069 4.069 25 H 0.073 0.927 26 H 0.022 0.978 27 H -0.020 1.020 28 H 0.038 0.962 29 H 0.111 0.889 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.230 0.770 33 H 0.242 0.758 34 H 0.282 0.718 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.609 -17.257 1.959 20.890 hybrid contribution -1.565 0.853 0.065 1.784 sum 10.044 -16.404 2.024 19.341 Atomic orbital electron populations 1.70107 1.07913 1.27871 1.51821 1.25943 0.95681 1.03349 0.94781 0.85309 0.79249 0.78435 0.77479 1.18087 1.20798 1.20682 1.21478 0.93887 0.90566 1.49940 0.91063 1.19373 0.90070 0.88833 0.93550 1.62282 1.27285 1.02502 1.34415 1.22071 0.95595 0.98672 0.89997 1.22688 0.95770 0.83551 1.04349 1.58358 1.24019 1.03588 1.34432 1.20001 0.91740 0.81266 0.98217 1.22953 0.84078 1.01804 1.08851 1.68010 1.36338 0.99307 1.07741 1.23250 0.88692 0.95326 0.98157 1.23577 0.95015 0.83871 0.99525 1.70834 1.04826 1.24153 1.27438 1.27145 0.94121 0.92081 0.92674 1.78545 0.97898 1.10921 1.31467 1.47975 1.07981 1.06799 1.44400 1.22266 0.95750 0.99858 0.87097 1.22078 0.94950 0.89039 1.00852 0.92744 0.97762 1.02038 0.96214 0.88887 0.85925 0.89986 0.77031 0.75767 0.71830 0.92359 0.88721 0.90130 0.95900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.45 13.29 21.45 0.28 -55.17 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.52 -28.10 8.47 25.60 0.22 -27.89 16 8 H 0.07 3.68 7.13 -2.91 -0.02 3.65 16 9 C 0.21 10.75 4.72 85.56 0.40 11.15 16 10 N -0.54 -22.02 4.70 -900.27 -4.23 -26.26 16 11 C 0.07 2.25 5.43 86.31 0.47 2.72 16 12 C 0.06 1.53 4.28 86.31 0.37 1.90 16 13 N -0.49 -13.38 4.77 -700.94 -3.35 -16.72 16 14 C 0.30 7.41 6.45 131.42 0.85 8.26 16 15 C -0.03 -0.54 9.91 84.11 0.83 0.29 16 16 N -0.40 -7.73 10.41 -194.86 -2.03 -9.76 16 17 C 0.13 2.24 11.32 85.33 0.97 3.20 16 18 C 0.24 5.45 7.92 134.03 1.06 6.51 16 19 N -0.54 -12.39 11.24 -198.07 -2.23 -14.62 16 20 C 0.24 4.99 12.98 180.79 2.35 7.34 16 21 N -0.36 -9.52 10.96 -61.29 -0.67 -10.20 16 22 N -0.29 -7.61 3.79 -190.62 -0.72 -8.33 16 23 C 0.08 2.23 5.46 86.31 0.47 2.70 16 24 C 0.06 2.13 5.61 86.31 0.48 2.61 16 25 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 26 H 0.00 0.24 8.03 -2.39 -0.02 0.22 16 27 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 3.35 6.79 -2.39 -0.02 3.33 16 30 H 0.12 2.25 7.15 -2.39 -0.02 2.23 16 31 H 0.08 1.84 7.56 -2.39 -0.02 1.82 16 32 H 0.21 3.18 5.67 -2.91 -0.02 3.16 16 33 H 0.23 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.27 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 2.83 6.15 -2.39 -0.01 2.82 16 37 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.97 311.54 -0.90 -69.87 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.08 Total: 7.18 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 8.93 Total: 19.28 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -12.94 Total: -141.04 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.97 -0.90 -69.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.729 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds