Wall clock time and date at job start Tue Mar 31 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.21787 * 2 1 4 4 C 1.53470 * 109.32874 * 240.69295 * 2 1 3 5 5 N 1.47260 * 107.93610 * 286.52793 * 4 2 1 6 6 C 1.34781 * 121.35329 * 118.51097 * 5 4 2 7 7 O 1.21606 * 119.99836 * 3.37292 * 6 5 4 8 8 C 1.47429 * 120.00149 * 183.36731 * 6 5 4 9 9 C 1.39225 * 120.28279 * 306.57351 * 8 6 5 10 10 C 1.38229 * 120.09300 * 179.97438 * 9 8 6 11 11 C 1.38830 * 120.66962 * 359.97438 * 10 9 8 12 12 C 1.37592 * 120.57670 * 0.02805 * 11 10 9 13 13 C 1.40707 * 119.87969 * 359.97250 * 12 11 10 14 14 C 1.40890 * 120.32880 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99960 * 146.21983 * 14 13 12 16 16 C 1.40277 * 119.99421 * 326.22253 * 14 13 12 17 17 N 1.30619 * 120.00575 * 354.09367 * 16 14 13 18 18 Si 1.86805 * 119.99681 * 174.09299 * 16 14 13 19 19 H 1.48505 * 109.46672 * 89.99857 * 18 16 14 20 20 H 1.48491 * 109.47478 * 209.99931 * 18 16 14 21 21 H 1.48501 * 109.46986 * 330.00420 * 18 16 14 22 22 C 1.47049 * 117.29791 * 298.24352 * 5 4 2 23 23 C 1.50437 * 108.89033 * 42.98519 * 22 5 4 24 24 O 1.21282 * 118.49210 * 167.27574 * 23 22 5 25 25 N 1.33387 * 123.02197 * 347.29232 * 23 22 5 26 26 H 1.09002 * 109.47169 * 300.61570 * 1 2 3 27 27 H 1.09005 * 109.46655 * 60.61489 * 1 2 3 28 28 H 1.09000 * 109.47319 * 180.61307 * 1 2 3 29 29 H 1.09007 * 109.84896 * 166.93362 * 4 2 1 30 30 H 1.08996 * 109.84276 * 46.12692 * 4 2 1 31 31 H 1.07997 * 119.95673 * 359.97438 * 9 8 6 32 32 H 1.07997 * 119.66187 * 180.28154 * 10 9 8 33 33 H 1.08006 * 119.70762 * 179.97438 * 11 10 9 34 34 H 1.07993 * 120.05920 * 179.97438 * 12 11 10 35 35 H 0.97001 * 120.00701 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.57258 * 162.81047 * 22 5 4 37 37 H 1.08997 * 109.56502 * 283.04625 * 22 5 4 38 38 H 0.96999 * 117.70677 * 184.29585 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0293 0.0000 4 6 2.0379 -0.7089 -1.2628 5 7 1.8119 -2.1542 -1.0936 6 6 1.0078 -2.8408 -1.9293 7 8 0.5002 -2.2805 -2.8818 8 6 0.7436 -4.2712 -1.6888 9 6 1.8007 -5.1646 -1.5375 10 6 1.5485 -6.5048 -1.3116 11 6 0.2453 -6.9766 -1.2322 12 6 -0.8200 -6.1180 -1.3777 13 6 -0.5906 -4.7491 -1.6085 14 6 -1.6744 -3.8616 -1.7594 15 1 -1.5936 -2.8452 -1.4034 16 6 -2.8583 -4.2983 -2.3719 17 7 -2.9170 -5.4892 -2.9053 18 14 -4.3512 -3.1767 -2.4249 19 1 -4.3085 -2.3540 -3.6605 20 1 -5.5882 -3.9983 -2.4197 21 1 -4.3435 -2.2860 -1.2367 22 6 2.5040 -2.8190 0.0206 23 6 2.4106 -1.9462 1.2423 24 8 2.7137 -2.4203 2.3166 25 7 2.0094 -0.6748 1.1984 26 1 -0.3633 0.5234 0.8844 27 1 -0.3633 0.5043 -0.8955 28 1 -0.3634 -1.0276 0.0110 29 1 3.1029 -0.5159 -1.3926 30 1 1.4899 -0.3504 -2.1341 31 1 2.8191 -4.8100 -1.5967 32 1 2.3737 -7.1909 -1.1907 33 1 0.0661 -8.0269 -1.0556 34 1 -1.8304 -6.4941 -1.3149 35 1 -3.7356 -5.7911 -3.3292 36 1 2.0318 -3.7806 0.2220 37 1 3.5509 -2.9739 -0.2404 38 1 2.0386 -0.1640 2.0224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601618382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:05 Heat of formation + Delta-G solvation = -45.406405 kcal Electronic energy + Delta-G solvation = -23504.962460 eV Core-core repulsion = 20119.034576 eV Total energy + Delta-G solvation = -3385.927884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51789 -38.75499 -37.18116 -36.22665 -34.22919 -33.62502 -31.14427 -30.10434 -29.59453 -27.60290 -26.49988 -25.30422 -22.79495 -22.01291 -20.99861 -19.59545 -18.73570 -17.49494 -16.98136 -16.85929 -16.03549 -15.57373 -15.35970 -14.78598 -14.48915 -14.43298 -13.96367 -13.71423 -13.38859 -12.87325 -12.69151 -12.49374 -12.34241 -11.96859 -11.85184 -11.75349 -11.43247 -11.34728 -11.17539 -11.13737 -10.87471 -10.53197 -10.15947 -10.00779 -9.71634 -9.32687 -9.14704 -8.84766 -8.30375 -7.61273 -7.46307 -6.82025 -4.50545 2.40777 2.66560 2.76958 3.04162 3.08561 3.12743 3.16313 3.42967 3.73391 3.90087 4.56382 4.58354 4.64053 4.99008 5.09207 5.37519 5.45281 5.50894 5.65326 5.71596 5.81514 5.86327 5.94130 6.01375 6.26615 6.36547 6.46199 6.66074 6.87652 6.91800 7.02433 7.16013 7.33007 7.37962 7.58633 7.71301 7.89759 7.93605 8.10788 8.24671 8.46806 8.72379 8.77906 9.00460 10.12238 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.007231 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.934284 B = 3871.426106 C = 4999.003184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 H 0.091 0.909 4 C 0.101 3.899 5 N -0.627 5.627 6 C 0.593 3.407 7 O -0.528 6.528 8 C -0.255 4.255 9 C -0.067 4.067 10 C -0.237 4.237 11 C -0.095 4.095 12 C -0.148 4.148 13 C 0.149 3.851 14 C -0.436 4.436 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.914 3.086 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.261 1.261 22 C 0.098 3.902 23 C 0.516 3.484 24 O -0.554 6.554 25 N -0.713 5.713 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.283 0.717 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 8.222 3.904 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.109 0.891 4 C -0.022 4.022 5 N -0.364 5.364 6 C 0.386 3.614 7 O -0.403 6.403 8 C -0.259 4.259 9 C -0.086 4.086 10 C -0.256 4.256 11 C -0.114 4.114 12 C -0.167 4.167 13 C 0.146 3.854 14 C -0.465 4.465 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.419 5.419 18 Si 0.738 3.262 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.028 4.028 23 C 0.303 3.697 24 O -0.432 6.432 25 N -0.365 5.365 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.745 7.970 3.554 10.448 hybrid contribution -0.635 0.666 0.144 0.931 sum 5.110 8.636 3.698 10.695 Atomic orbital electron populations 1.22250 0.94304 1.03859 1.02131 1.21446 0.95355 0.96218 0.85147 0.89063 1.21955 1.01066 0.81460 0.97748 1.48299 1.49251 1.07990 1.30904 1.18526 0.75216 0.87167 0.80493 1.90691 1.49586 1.70838 1.29234 1.19433 0.94799 0.90921 1.20786 1.20615 0.95888 0.93646 0.98423 1.20321 0.95830 0.94804 1.14660 1.20841 0.93205 0.97823 0.99519 1.21390 0.98177 0.93619 1.03499 1.17369 0.89844 0.92398 0.85839 1.19486 0.96398 0.98096 1.32539 0.90541 1.25921 0.99839 0.95354 0.93087 1.69661 1.28426 1.17763 1.26016 0.86209 0.79536 0.80474 0.79976 1.19181 1.20069 1.18501 1.21936 0.99552 0.97968 0.83304 1.20542 0.75727 0.82272 0.91186 1.90762 1.50414 1.72067 1.29951 1.45492 1.65918 1.12307 1.12760 0.92502 0.91073 0.91334 0.91091 0.87128 0.88878 0.88831 0.88923 0.85957 0.90612 0.84921 0.88678 0.76997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.38 37.16 0.35 -1.81 16 2 C 0.12 1.38 3.87 -68.15 -0.26 1.12 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.10 1.32 5.92 -3.38 -0.02 1.30 16 5 N -0.63 -10.55 2.74 -175.13 -0.48 -11.03 16 6 C 0.59 12.88 6.44 -12.52 -0.08 12.80 16 7 O -0.53 -13.03 15.71 5.27 0.08 -12.95 16 8 C -0.25 -5.96 4.87 -104.37 -0.51 -6.47 16 9 C -0.07 -1.40 7.62 -39.22 -0.30 -1.70 16 10 C -0.24 -4.93 10.03 -39.37 -0.39 -5.32 16 11 C -0.10 -2.10 10.01 -39.60 -0.40 -2.50 16 12 C -0.15 -3.67 8.62 -38.89 -0.34 -4.00 16 13 C 0.15 3.85 5.53 -106.54 -0.59 3.26 16 14 C -0.44 -11.47 7.85 -37.81 -0.30 -11.76 16 15 H 0.08 2.01 7.36 -52.49 -0.39 1.63 16 16 C 0.08 1.91 5.31 -17.30 -0.09 1.82 16 17 N -0.79 -20.25 10.94 55.56 0.61 -19.64 16 18 Si 0.91 19.04 29.57 -169.99 -5.03 14.02 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C 0.10 1.53 5.34 -5.02 -0.03 1.51 16 23 C 0.52 8.04 7.84 -11.73 -0.09 7.95 16 24 O -0.55 -10.36 17.80 5.56 0.10 -10.26 16 25 N -0.71 -8.83 5.00 -54.54 -0.27 -9.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.16 7.99 -51.93 -0.42 0.74 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.11 1.55 7.00 -51.93 -0.36 1.19 16 31 H 0.09 1.67 7.37 -52.49 -0.39 1.28 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 34 H 0.12 3.12 6.44 -52.49 -0.34 2.78 16 35 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 36 H 0.13 2.35 5.45 -51.93 -0.28 2.07 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.40 4.21 8.80 -40.82 -0.36 3.86 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -30.83 317.26 -7.88 -38.71 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.63 Total: 9.27 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.05 Total: -3.80 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.14 Total: -39.78 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.18 Total: -23.21 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.83 -7.88 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601618382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.694 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds