Wall clock time and date at job start Tue Mar 31 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48499 * 109.47171 * 274.06712 * 3 2 1 5 5 H 1.48500 * 109.47338 * 34.06927 * 3 2 1 6 6 H 1.48503 * 109.46832 * 154.06758 * 3 2 1 7 7 C 1.38812 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99682 * 197.52371 * 7 2 1 9 9 N 1.36933 * 119.99952 * 17.52564 * 7 2 1 10 10 C 1.46928 * 120.62574 * 208.00104 * 9 7 2 11 11 C 1.53196 * 108.77354 * 233.62807 * 10 9 7 12 12 C 1.53038 * 109.31083 * 305.36555 * 11 10 9 13 13 N 1.46496 * 109.45920 * 181.38452 * 12 11 10 14 14 C 1.38407 * 120.00170 * 154.97230 * 13 12 11 15 15 C 1.36479 * 120.23825 * 0.02562 * 14 13 12 16 16 N 1.32993 * 121.00480 * 179.97438 * 15 14 13 17 17 C 1.31346 * 121.37993 * 0.02562 * 16 15 14 18 18 C 1.40547 * 119.84157 * 0.27925 * 17 16 15 19 19 N 1.32652 * 133.77643 * 180.45558 * 18 17 16 20 20 C 1.32542 * 109.71254 * 179.50754 * 19 18 17 21 21 N 1.31355 * 109.66773 * 359.72005 * 20 19 18 22 22 N 1.36337 * 120.24163 * 179.97438 * 14 13 12 23 23 C 1.53035 * 109.52654 * 61.37093 * 12 11 10 24 24 C 1.46924 * 120.63392 * 28.01982 * 9 7 2 25 25 H 0.97006 * 119.99640 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.58925 * 113.84136 * 10 9 7 27 27 H 1.09000 * 109.70737 * 353.48172 * 10 9 7 28 28 H 1.08999 * 109.49710 * 185.41496 * 11 10 9 29 29 H 1.08997 * 109.52139 * 65.33096 * 11 10 9 30 30 H 1.08997 * 109.46109 * 301.35489 * 12 11 10 31 31 H 0.97004 * 120.00301 * 334.97683 * 13 12 11 32 32 H 1.08006 * 119.49649 * 359.95874 * 15 14 13 33 33 H 1.08005 * 120.07808 * 179.97438 * 17 16 15 34 34 H 1.07999 * 125.17035 * 179.70860 * 20 19 18 35 35 H 1.09000 * 109.50201 * 58.58063 * 23 12 11 36 36 H 1.09003 * 109.49925 * 178.67290 * 23 12 11 37 37 H 1.09004 * 109.58103 * 246.15969 * 24 9 7 38 38 H 1.08992 * 109.58298 * 6.43693 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4116 2.0961 -1.3965 5 1 1.4933 2.6263 0.7843 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2811 9 7 1.3732 -2.3603 -0.3582 10 6 1.8145 -3.6543 0.1802 11 6 2.0773 -4.6103 -0.9876 12 6 0.8282 -4.6890 -1.8683 13 7 1.0646 -5.6278 -2.9678 14 6 -0.0035 -6.2640 -3.5762 15 6 -1.2789 -6.0199 -3.1562 16 7 -2.3163 -6.6222 -3.7303 17 6 -2.1529 -7.4717 -4.7187 18 6 -0.8590 -7.7625 -5.1842 19 7 -0.3831 -8.5471 -6.1421 20 6 0.9384 -8.4539 -6.1810 21 7 1.3493 -7.6099 -5.2621 22 7 0.2108 -7.1383 -4.6002 23 6 0.5166 -3.3036 -2.4389 24 6 0.2358 -2.3328 -1.2877 25 1 -0.4850 0.8401 0.0004 26 1 1.0367 -4.0672 0.8225 27 1 2.7304 -3.5199 0.7556 28 1 2.3124 -5.6017 -0.6003 29 1 2.9162 -4.2420 -1.5781 30 1 -0.0159 -5.0340 -1.2713 31 1 1.9696 -5.8037 -3.2693 32 1 -1.4482 -5.3271 -2.3451 33 1 -3.0104 -7.9493 -5.1693 34 1 1.5801 -8.9904 -6.8642 35 1 1.3702 -2.9472 -3.0156 36 1 -0.3592 -3.3647 -3.0849 37 1 -0.6708 -2.6380 -0.7650 38 1 0.1091 -1.3239 -1.6803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611924875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:06 Heat of formation + Delta-G solvation = 162.109779 kcal Electronic energy + Delta-G solvation = -22599.295767 eV Core-core repulsion = 19286.951963 eV Total energy + Delta-G solvation = -3312.343805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.01413 -39.52261 -38.07395 -35.93268 -33.79374 -32.19580 -31.54879 -30.30575 -30.03033 -28.78947 -25.40769 -24.57383 -24.08746 -22.48525 -22.30417 -21.35076 -19.79094 -18.64082 -18.01369 -16.98498 -16.75038 -16.62382 -15.76866 -15.46846 -14.85446 -14.54883 -14.21457 -13.87765 -13.63477 -13.36514 -13.18820 -12.97507 -12.60267 -12.24838 -12.17657 -11.71036 -11.26225 -11.12610 -10.85078 -10.65053 -10.51187 -10.41212 -10.36070 -10.12979 -10.11688 -9.98057 -9.82939 -9.52334 -8.59908 -7.61131 -6.85450 -5.92278 -3.35489 0.62468 0.74172 1.55415 2.53450 2.85435 3.30571 3.38342 3.39206 3.42776 3.74134 4.06391 4.38625 4.41703 4.54687 4.82257 4.93541 5.14612 5.25920 5.33097 5.36989 5.48353 5.64926 5.79516 5.97254 5.99992 6.05425 6.11117 6.17834 6.27480 6.28846 6.40516 6.52922 6.71005 6.81799 7.08557 7.20877 7.47356 7.63319 7.68248 7.73731 8.30741 9.06800 9.69342 10.24427 11.16546 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.031708 B = 0.003605 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.838414 B = 7765.538305 C = 8039.737868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.152 3.848 13 N -0.703 5.703 14 C 0.420 3.580 15 C -0.074 4.074 16 N -0.371 5.371 17 C 0.060 3.940 18 C 0.274 3.726 19 N -0.541 5.541 20 C 0.241 3.759 21 N -0.346 5.346 22 N -0.311 5.311 23 C -0.155 4.155 24 C 0.173 3.827 25 H 0.256 0.744 26 H 0.023 0.977 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.410 0.590 32 H 0.188 0.812 33 H 0.187 0.813 34 H 0.227 0.773 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -13.966 -7.732 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.049 3.951 13 N -0.329 5.329 14 C 0.199 3.801 15 C -0.230 4.230 16 N -0.082 5.082 17 C -0.121 4.121 18 C 0.019 3.981 19 N -0.273 5.273 20 C -0.060 4.060 21 N -0.177 5.177 22 N -0.094 5.094 23 C -0.195 4.195 24 C 0.046 3.954 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.246 0.754 32 H 0.205 0.795 33 H 0.204 0.796 34 H 0.243 0.757 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.413 -13.482 -7.328 15.350 hybrid contribution 1.679 0.629 -0.505 1.863 sum 1.266 -12.853 -7.833 15.105 Atomic orbital electron populations 1.70019 1.05270 1.25776 1.53280 1.25053 0.95297 0.98529 1.00439 0.86272 0.79208 0.83585 0.77673 1.21411 1.21648 1.20339 1.19186 0.92862 0.84786 1.42066 0.91518 1.44096 1.36411 1.01481 1.49381 1.20845 0.98415 0.86555 0.92006 1.22374 0.96264 1.00311 0.98954 1.21440 0.99907 0.88299 0.85414 1.45351 1.06430 1.44600 1.36521 1.18813 0.91541 0.85902 0.83842 1.21917 0.83304 1.09857 1.07881 1.67755 1.32863 1.02841 1.04725 1.22297 0.91798 1.00680 0.97373 1.23072 0.91515 0.91916 0.91645 1.70812 1.09440 1.25816 1.21184 1.26238 0.90977 0.93721 0.95044 1.78411 1.03593 1.21219 1.14461 1.47917 1.08015 1.29555 1.23941 1.22746 1.01153 0.94672 1.00963 1.20794 0.88934 0.98329 0.87348 0.93433 0.95870 0.91960 0.92225 0.91476 0.89536 0.75396 0.79540 0.79642 0.75671 0.91991 0.92527 0.95757 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 11.22 55.49 0.62 -24.16 16 2 C 0.01 0.16 4.90 -17.43 -0.09 0.07 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -13.45 2.99 -172.32 -0.52 -13.96 16 10 C 0.15 2.73 6.51 -3.71 -0.02 2.71 16 11 C -0.14 -2.03 5.55 -26.61 -0.15 -2.17 16 12 C 0.15 2.15 2.10 -67.89 -0.14 2.01 16 13 N -0.70 -9.13 5.22 -53.79 -0.28 -9.41 16 14 C 0.42 5.73 7.68 -153.09 -1.18 4.55 16 15 C -0.07 -0.98 9.91 -17.68 -0.18 -1.15 16 16 N -0.37 -4.88 10.41 -12.94 -0.13 -5.01 16 17 C 0.06 0.72 11.32 -16.89 -0.19 0.52 16 18 C 0.27 3.74 7.92 -156.24 -1.24 2.50 16 19 N -0.54 -7.19 11.24 -13.96 -0.16 -7.34 16 20 C 0.24 2.80 12.98 -91.88 -1.19 1.60 16 21 N -0.35 -4.73 12.79 29.27 0.37 -4.35 16 22 N -0.31 -4.40 3.98 -11.60 -0.05 -4.45 16 23 C -0.15 -2.60 5.55 -26.62 -0.15 -2.74 16 24 C 0.17 3.69 5.31 -3.72 -0.02 3.67 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.19 6.45 -51.93 -0.34 0.85 16 31 H 0.41 5.21 8.73 -40.82 -0.36 4.85 16 32 H 0.19 2.34 5.95 -52.48 -0.31 2.03 16 33 H 0.19 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.23 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -29.42 313.90 -9.76 -39.18 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.64 Total: 4.25 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -4.68 Total: 4.75 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.14 Total: -68.69 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.42 -9.76 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611924875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.287 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds