Wall clock time and date at job start Tue Mar 31 2020 03:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48499 * 109.47171 * 274.06712 * 3 2 1 5 5 H 1.48500 * 109.47338 * 34.06927 * 3 2 1 6 6 H 1.48503 * 109.46832 * 154.06758 * 3 2 1 7 7 C 1.38812 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99682 * 197.52371 * 7 2 1 9 9 N 1.36933 * 119.99952 * 17.52564 * 7 2 1 10 10 C 1.46928 * 120.62574 * 208.00104 * 9 7 2 11 11 C 1.53196 * 108.77354 * 233.62807 * 10 9 7 12 12 C 1.53038 * 109.31083 * 305.36555 * 11 10 9 13 13 N 1.46496 * 109.45920 * 181.38452 * 12 11 10 14 14 C 1.38407 * 120.00170 * 154.97230 * 13 12 11 15 15 C 1.36479 * 120.23825 * 0.02562 * 14 13 12 16 16 N 1.32993 * 121.00480 * 179.97438 * 15 14 13 17 17 C 1.31346 * 121.37993 * 0.02562 * 16 15 14 18 18 C 1.40547 * 119.84157 * 0.27925 * 17 16 15 19 19 N 1.32652 * 133.77643 * 180.45558 * 18 17 16 20 20 C 1.32542 * 109.71254 * 179.50754 * 19 18 17 21 21 N 1.31355 * 109.66773 * 359.72005 * 20 19 18 22 22 N 1.36337 * 120.24163 * 179.97438 * 14 13 12 23 23 C 1.53035 * 109.52654 * 61.37093 * 12 11 10 24 24 C 1.46924 * 120.63392 * 28.01982 * 9 7 2 25 25 H 0.97006 * 119.99640 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.58925 * 113.84136 * 10 9 7 27 27 H 1.09000 * 109.70737 * 353.48172 * 10 9 7 28 28 H 1.08999 * 109.49710 * 185.41496 * 11 10 9 29 29 H 1.08997 * 109.52139 * 65.33096 * 11 10 9 30 30 H 1.08997 * 109.46109 * 301.35489 * 12 11 10 31 31 H 0.97004 * 120.00301 * 334.97683 * 13 12 11 32 32 H 1.08006 * 119.49649 * 359.95874 * 15 14 13 33 33 H 1.08005 * 120.07808 * 179.97438 * 17 16 15 34 34 H 1.07999 * 125.17035 * 179.70860 * 20 19 18 35 35 H 1.09000 * 109.50201 * 58.58063 * 23 12 11 36 36 H 1.09003 * 109.49925 * 178.67290 * 23 12 11 37 37 H 1.09004 * 109.58103 * 246.15969 * 24 9 7 38 38 H 1.08992 * 109.58298 * 6.43693 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4116 2.0961 -1.3965 5 1 1.4933 2.6263 0.7843 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2811 9 7 1.3732 -2.3603 -0.3582 10 6 1.8145 -3.6543 0.1802 11 6 2.0773 -4.6103 -0.9876 12 6 0.8282 -4.6890 -1.8683 13 7 1.0646 -5.6278 -2.9678 14 6 -0.0035 -6.2640 -3.5762 15 6 -1.2789 -6.0199 -3.1562 16 7 -2.3163 -6.6222 -3.7303 17 6 -2.1529 -7.4717 -4.7187 18 6 -0.8590 -7.7625 -5.1842 19 7 -0.3831 -8.5471 -6.1421 20 6 0.9384 -8.4539 -6.1810 21 7 1.3493 -7.6099 -5.2621 22 7 0.2108 -7.1383 -4.6002 23 6 0.5166 -3.3036 -2.4389 24 6 0.2358 -2.3328 -1.2877 25 1 -0.4850 0.8401 0.0004 26 1 1.0367 -4.0672 0.8225 27 1 2.7304 -3.5199 0.7556 28 1 2.3124 -5.6017 -0.6003 29 1 2.9162 -4.2420 -1.5781 30 1 -0.0159 -5.0340 -1.2713 31 1 1.9696 -5.8037 -3.2693 32 1 -1.4482 -5.3271 -2.3451 33 1 -3.0104 -7.9493 -5.1693 34 1 1.5801 -8.9904 -6.8642 35 1 1.3702 -2.9472 -3.0156 36 1 -0.3592 -3.3647 -3.0849 37 1 -0.6708 -2.6380 -0.7650 38 1 0.1091 -1.3239 -1.6803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611924875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:05 Heat of formation + Delta-G solvation = 145.083532 kcal Electronic energy + Delta-G solvation = -22600.034081 eV Core-core repulsion = 19286.951963 eV Total energy + Delta-G solvation = -3313.082118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.99086 -40.61009 -39.31388 -37.23082 -35.11407 -33.70961 -32.52907 -31.77830 -31.47933 -29.94690 -27.01902 -25.58111 -25.26414 -23.90385 -23.67280 -22.45799 -21.19505 -19.78130 -19.00713 -18.68381 -17.81732 -17.63498 -16.99140 -16.70835 -16.37247 -15.67007 -15.43002 -15.38572 -14.96945 -14.81662 -14.51120 -14.17175 -13.95989 -13.31425 -13.31122 -13.18399 -13.00933 -12.64111 -12.58901 -12.15325 -12.06991 -11.86659 -11.63288 -11.53531 -11.35168 -11.12009 -11.10703 -10.78662 -10.51830 -8.72383 -8.62182 -7.89424 -5.33619 -0.35146 -0.26304 0.57007 1.46163 1.48870 1.56611 1.60535 1.80737 2.44289 2.50382 2.83427 3.08270 3.27065 3.47540 3.63345 3.70194 3.73448 3.89424 3.93473 4.18546 4.41034 4.46459 4.61087 4.61955 4.75508 4.91431 4.96057 4.98661 5.06431 5.10352 5.17187 5.29221 5.30063 5.45891 5.63622 5.68512 5.75008 6.14117 6.38509 6.65036 6.77324 7.14233 7.84796 8.34448 9.17069 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.031708 B = 0.003605 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.838414 B = 7765.538305 C = 8039.737868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.046 4.046 3 Si 0.960 3.040 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.144 3.856 11 C -0.125 4.125 12 C 0.167 3.833 13 N -0.697 5.697 14 C 0.409 3.591 15 C -0.076 4.076 16 N -0.385 5.385 17 C 0.072 3.928 18 C 0.258 3.742 19 N -0.551 5.551 20 C 0.245 3.755 21 N -0.367 5.367 22 N -0.318 5.318 23 C -0.138 4.138 24 C 0.179 3.821 25 H 0.250 0.750 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.413 0.587 32 H 0.191 0.809 33 H 0.216 0.784 34 H 0.268 0.732 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.011 0.989 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -15.832 -8.648 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.242 4.242 3 Si 0.789 3.211 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.018 3.982 11 C -0.165 4.165 12 C 0.063 3.937 13 N -0.325 5.325 14 C 0.189 3.811 15 C -0.231 4.231 16 N -0.096 5.096 17 C -0.109 4.109 18 C 0.003 3.997 19 N -0.283 5.283 20 C -0.055 4.055 21 N -0.198 5.198 22 N -0.102 5.102 23 C -0.179 4.179 24 C 0.053 3.947 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.250 0.750 32 H 0.208 0.792 33 H 0.233 0.767 34 H 0.284 0.716 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.229 -15.384 -8.248 17.457 hybrid contribution 1.452 1.088 -0.281 1.836 sum 1.681 -14.297 -8.529 16.732 Atomic orbital electron populations 1.70155 1.06480 1.25845 1.55132 1.25712 0.95967 1.01257 1.01226 0.85356 0.78377 0.80107 0.77227 1.21625 1.22270 1.19295 1.19497 0.93080 0.86125 1.40704 0.91510 1.44340 1.36498 1.02329 1.50201 1.21000 0.98287 0.85315 0.93551 1.22164 0.96170 1.00674 0.97444 1.21124 1.00084 0.86928 0.85535 1.44989 1.06494 1.44528 1.36442 1.18811 0.91591 0.86415 0.84243 1.22024 0.83391 1.09798 1.07913 1.67812 1.32827 1.03541 1.05411 1.22863 0.92251 0.99474 0.96308 1.23453 0.91986 0.92261 0.92032 1.70845 1.10303 1.25931 1.21192 1.27107 0.90858 0.92852 0.94679 1.78393 1.03983 1.22131 1.15271 1.48015 1.08375 1.29698 1.24066 1.22465 1.01095 0.95303 0.99010 1.20549 0.88342 0.97435 0.88378 0.94081 0.95523 0.91961 0.89191 0.91754 0.88631 0.75032 0.79231 0.76718 0.71646 0.93077 0.91551 0.97118 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.81 11.22 21.65 0.24 -52.56 16 2 C -0.05 -2.45 4.90 84.86 0.42 -2.03 16 3 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.26 -13.71 9.58 84.03 0.81 -12.91 16 8 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -27.94 2.99 -699.10 -2.09 -30.03 16 10 C 0.14 5.15 6.51 86.36 0.56 5.71 16 11 C -0.12 -3.38 5.55 30.67 0.17 -3.21 16 12 C 0.17 4.44 2.10 45.02 0.09 4.53 16 13 N -0.70 -16.82 5.22 -324.10 -1.69 -18.52 16 14 C 0.41 10.48 7.68 131.42 1.01 11.49 16 15 C -0.08 -1.91 9.91 84.11 0.83 -1.08 16 16 N -0.38 -9.46 10.41 -194.86 -2.03 -11.49 16 17 C 0.07 1.58 11.32 85.33 0.97 2.55 16 18 C 0.26 6.52 7.92 134.02 1.06 7.58 16 19 N -0.55 -13.34 11.24 -198.08 -2.23 -15.57 16 20 C 0.25 5.04 12.98 180.79 2.35 7.39 16 21 N -0.37 -9.26 12.79 -61.30 -0.78 -10.04 16 22 N -0.32 -8.43 3.98 -190.62 -0.76 -9.18 16 23 C -0.14 -4.58 5.55 30.67 0.17 -4.41 16 24 C 0.18 7.84 5.31 86.36 0.46 8.30 16 25 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.43 6.45 -2.39 -0.02 2.42 16 31 H 0.41 9.65 8.73 -92.71 -0.81 8.84 16 32 H 0.19 4.52 5.95 -2.91 -0.02 4.50 16 33 H 0.22 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.27 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.05 7.66 -2.39 -0.02 2.04 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 Total: -1.00 -63.98 313.90 1.87 -62.11 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.29 Total: 15.88 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 8.89 Total: 23.92 kcal Atomic # 7 Polarization: -138.05 SS G_CDS: -9.34 Total: -147.39 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -63.98 1.87 -62.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611924875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.191 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds