Wall clock time and date at job start Tue Mar 31 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.34379 * 2 1 4 4 C 1.53247 * 109.40244 * 240.19610 * 2 1 3 5 5 H 1.08993 * 109.63682 * 297.78369 * 4 2 1 6 6 C 1.52996 * 109.63093 * 58.17735 * 4 2 1 7 7 S 1.81902 * 108.50434 * 177.87784 * 4 2 1 8 8 O 1.42095 * 109.47000 * 167.15070 * 7 4 2 9 9 C 1.81896 * 101.91204 * 51.30691 * 7 4 2 10 10 C 1.53250 * 108.51099 * 308.69695 * 9 7 4 11 11 N 1.46468 * 109.85762 * 61.99861 * 10 9 7 12 12 C 1.46900 * 110.99614 * 162.24129 * 11 10 9 13 13 C 1.50703 * 109.47196 * 290.31410 * 12 11 10 14 14 O 1.21283 * 119.99802 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00084 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99973 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47054 * 180.02562 * 16 15 13 18 18 H 1.07992 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99928 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99843 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47216 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47214 * 300.00115 * 21 19 17 24 24 H 1.48504 * 109.46876 * 60.00473 * 21 19 17 25 25 H 1.09002 * 109.46479 * 307.40819 * 1 2 3 26 26 H 1.08999 * 109.47002 * 67.40611 * 1 2 3 27 27 H 1.09000 * 109.47096 * 187.40818 * 1 2 3 28 28 H 1.09001 * 109.47510 * 59.99775 * 6 4 2 29 29 H 1.09006 * 109.47334 * 179.97438 * 6 4 2 30 30 H 1.08996 * 109.47191 * 299.99534 * 6 4 2 31 31 H 1.09004 * 109.63341 * 68.39862 * 9 7 4 32 32 H 1.09001 * 109.63297 * 188.79311 * 9 7 4 33 33 H 1.09007 * 109.40016 * 301.88391 * 10 9 7 34 34 H 1.08996 * 109.41474 * 182.12296 * 10 9 7 35 35 H 1.09004 * 109.47095 * 170.31858 * 12 11 10 36 36 H 1.09000 * 109.47417 * 50.31769 * 12 11 10 37 37 H 0.97001 * 120.00354 * 0.02562 * 15 13 12 38 38 H 1.08996 * 109.47243 * 59.99701 * 16 15 13 39 39 H 1.09000 * 109.47003 * 300.00153 * 16 15 13 40 40 H 0.97004 * 119.99741 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8911 1.0284 0.0000 4 6 2.0392 -0.7184 -1.2543 5 1 1.7095 -1.7572 -1.2406 6 6 1.4932 -0.0224 -2.5026 7 16 3.8569 -0.6490 -1.2616 8 8 4.3613 -1.5499 -2.2379 9 6 4.2629 -1.2665 0.4005 10 6 3.4476 -0.4728 1.4270 11 7 2.0167 -0.6867 1.1987 12 6 1.2322 -0.3033 2.3800 13 6 1.4885 -1.2857 3.4938 14 8 2.2502 -2.2135 3.3207 15 7 0.8714 -1.1331 4.6822 16 6 1.1210 -2.0878 5.7651 17 6 0.3151 -1.6953 6.9765 18 1 -0.3192 -0.8219 6.9432 19 6 0.3876 -2.4513 8.1272 20 7 1.1597 -3.5152 8.1675 21 14 -0.6107 -1.9644 9.6290 22 1 -0.3578 -2.9321 10.7267 23 1 -0.2121 -0.6031 10.0684 24 1 -2.0557 -1.9707 9.2862 25 1 -0.3632 0.6243 0.8163 26 1 -0.3633 0.3948 -0.9488 27 1 -0.3633 -1.0191 0.1325 28 1 1.8302 1.0141 -2.5173 29 1 1.8572 -0.5351 -3.3930 30 1 0.4037 -0.0501 -2.4868 31 1 4.0091 -2.3243 0.4703 32 1 5.3276 -1.1320 0.5911 33 1 3.6755 0.5886 1.3279 34 1 3.7078 -0.8055 2.4318 35 1 0.1715 -0.3076 2.1288 36 1 1.5252 0.6959 2.7023 37 1 0.2619 -0.3913 4.8206 38 1 2.1816 -2.0828 6.0165 39 1 0.8288 -3.0872 5.4429 40 1 1.2110 -4.0469 8.9772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736629563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:00 Heat of formation + Delta-G solvation = -96.539195 kcal Electronic energy + Delta-G solvation = -21320.206620 eV Core-core repulsion = 18067.505403 eV Total energy + Delta-G solvation = -3252.701217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88627 -39.11736 -36.87752 -36.10470 -34.91036 -34.33323 -32.51753 -30.10928 -29.20656 -27.54323 -25.43726 -24.36732 -23.03414 -21.45224 -20.94689 -18.99509 -18.47367 -17.70064 -17.22642 -16.81309 -16.71081 -16.51423 -16.08254 -15.97309 -15.43452 -15.20103 -14.83799 -14.32228 -14.27992 -13.98467 -13.91435 -13.69228 -13.34323 -13.09287 -12.90306 -12.84416 -12.68195 -12.59840 -12.43103 -12.25867 -12.20482 -12.03528 -11.55452 -11.50015 -10.79174 -10.75569 -10.57547 -9.77385 -9.31489 -9.17175 -8.28694 -6.45694 0.64435 1.43459 1.47738 1.55876 1.56162 1.87193 2.27540 2.45380 2.75142 3.00637 3.06267 3.70359 3.83211 4.05639 4.12343 4.14740 4.23385 4.36474 4.46113 4.51843 4.55183 4.63131 4.77460 4.91109 5.00467 5.03707 5.08173 5.12691 5.15960 5.24835 5.31875 5.47724 5.51013 5.72840 5.86124 5.96921 6.25738 6.66588 7.01176 7.24760 7.60651 8.83324 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.036153 B = 0.003250 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.307492 B = 8612.244131 C = 9144.034728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.111 3.889 3 H 0.108 0.892 4 C -0.392 4.392 5 H 0.063 0.937 6 C -0.128 4.128 7 S 1.295 4.705 8 O -0.925 6.925 9 C -0.431 4.431 10 C 0.082 3.918 11 N -0.571 5.571 12 C 0.049 3.951 13 C 0.488 3.512 14 O -0.592 6.592 15 N -0.710 5.710 16 C 0.269 3.731 17 C -0.554 4.554 18 H 0.087 0.913 19 C 0.001 3.999 20 N -0.934 5.934 21 Si 0.986 3.014 22 H -0.289 1.289 23 H -0.259 1.259 24 H -0.261 1.261 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.039 0.961 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.409 0.591 38 H -0.016 1.016 39 H -0.021 1.021 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 18.985 -17.961 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 H 0.126 0.874 4 C -0.512 4.512 5 H 0.082 0.918 6 C -0.187 4.187 7 S 1.497 4.503 8 O -0.921 6.921 9 C -0.569 4.569 10 C -0.046 4.046 11 N -0.298 5.298 12 C -0.080 4.080 13 C 0.275 3.725 14 O -0.473 6.473 15 N -0.361 5.361 16 C 0.146 3.854 17 C -0.592 4.592 18 H 0.105 0.895 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.183 1.183 24 H -0.186 1.186 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.245 0.755 38 H 0.002 0.998 39 H -0.003 1.003 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.203 17.963 -18.805 26.006 hybrid contribution -0.861 -2.388 1.624 3.013 sum -1.064 15.575 -17.181 23.214 Atomic orbital electron populations 1.22177 0.92955 1.02038 1.04428 1.21430 0.96901 0.96406 0.84964 0.87413 1.27414 1.17867 1.04395 1.01565 0.91801 1.21609 1.02912 1.01808 0.92354 1.69215 0.86221 1.14161 0.80727 1.92971 1.74889 1.70728 1.53529 1.27600 1.06952 1.06043 1.16276 1.21673 0.85508 0.99371 0.98070 1.60482 1.03620 1.62391 1.03300 1.22073 1.01963 0.96290 0.87718 1.21668 0.79851 0.86844 0.84115 1.90649 1.38689 1.35467 1.82508 1.46167 1.46662 1.30753 1.12511 1.18451 0.94547 0.87459 0.84972 1.21618 1.27513 1.13071 0.97007 0.89475 1.26111 0.96517 0.94390 1.02813 1.70152 1.39772 1.17590 1.29776 0.85194 0.78834 0.78352 0.76759 1.21423 1.18338 1.18592 0.89849 0.88903 0.94220 0.87564 0.93755 0.89759 0.92978 0.85228 0.88292 0.92318 0.84751 0.87636 0.75489 0.99782 1.00293 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 7.82 71.98 0.56 -1.33 16 2 C 0.11 1.53 2.05 45.08 0.09 1.63 16 3 H 0.11 0.55 7.91 -2.39 -0.02 0.53 16 4 C -0.39 -6.81 2.87 30.68 0.09 -6.72 16 5 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 6 C -0.13 -1.41 8.84 71.98 0.64 -0.77 16 7 S 1.30 24.39 13.19 -56.49 -0.74 23.65 16 8 O -0.93 -31.01 18.14 -148.98 -2.70 -33.71 16 9 C -0.43 -10.39 6.67 72.07 0.48 -9.91 16 10 C 0.08 1.84 4.95 86.47 0.43 2.26 16 11 N -0.57 -13.14 3.98 -876.72 -3.49 -16.63 16 12 C 0.05 1.11 5.02 85.56 0.43 1.54 16 13 C 0.49 18.56 7.37 87.66 0.65 19.21 16 14 O -0.59 -29.34 14.82 -3.04 -0.05 -29.39 16 15 N -0.71 -28.66 5.55 -466.78 -2.59 -31.25 16 16 C 0.27 14.71 5.43 85.63 0.46 15.18 16 17 C -0.55 -29.75 9.28 25.60 0.24 -29.51 16 18 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 19 C 0.00 0.05 5.46 84.65 0.46 0.52 16 20 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 21 Si 0.99 41.82 29.54 68.60 2.03 43.84 16 22 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H 0.08 0.70 6.53 -2.39 -0.02 0.68 16 26 H 0.09 0.70 6.01 -2.39 -0.01 0.68 16 27 H 0.04 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.08 0.75 6.25 -2.39 -0.01 0.73 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.10 1.13 7.92 -2.38 -0.02 1.12 16 34 H 0.06 1.81 6.16 -2.39 -0.01 1.80 16 35 H 0.13 2.39 5.34 -2.38 -0.01 2.37 16 36 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.41 13.02 8.32 -92.71 -0.77 12.25 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -90.76 329.12 -2.46 -93.22 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.27 Total: 14.70 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.53 Total: -7.91 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -5.80 Total: -104.39 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -2.75 Total: -63.10 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 24.39 SS G_CDS: -0.74 Total: 23.65 kcal Total: -90.76 -2.46 -93.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736629563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.318 kcal (2) G-P(sol) polarization free energy of solvation -90.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds