Wall clock time and date at job start Tue Mar 31 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99557 * 2 1 4 4 C 1.50707 * 109.54396 * 63.11883 * 3 2 1 5 5 O 1.20824 * 119.99649 * 215.31632 * 4 3 2 6 6 O 1.34230 * 119.99797 * 35.31326 * 4 3 2 7 7 C 1.45204 * 116.99624 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46777 * 180.02562 * 7 6 4 9 9 O 1.42891 * 109.47232 * 64.99989 * 8 7 6 10 10 C 1.42900 * 113.99792 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47387 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99363 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00496 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00573 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99756 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47190 * 90.00013 * 15 13 11 17 17 H 1.48501 * 109.46926 * 209.99770 * 15 13 11 18 18 H 1.48494 * 109.47273 * 329.99866 * 15 13 11 19 19 C 1.53177 * 109.61431 * 183.33577 * 3 2 1 20 20 C 1.53094 * 109.16195 * 62.93492 * 19 3 2 21 21 O 1.42904 * 109.41523 * 57.60773 * 20 19 3 22 22 C 1.42904 * 114.09418 * 298.84153 * 21 20 19 23 23 C 1.53086 * 109.41586 * 61.16113 * 22 21 20 24 24 H 1.08994 * 109.47139 * 66.55293 * 1 2 3 25 25 H 1.09002 * 109.47052 * 186.54755 * 1 2 3 26 26 H 1.08999 * 109.47467 * 306.54556 * 1 2 3 27 27 H 1.09002 * 109.47099 * 60.00332 * 7 6 4 28 28 H 1.09003 * 109.47099 * 299.99941 * 7 6 4 29 29 H 1.08999 * 109.46726 * 185.00476 * 8 7 6 30 30 H 1.08998 * 109.47254 * 304.99622 * 8 7 6 31 31 H 1.08995 * 109.47330 * 300.00104 * 10 9 8 32 32 H 1.08998 * 109.47643 * 60.00225 * 10 9 8 33 33 H 0.96996 * 120.00067 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.52499 * 182.83408 * 19 3 2 35 35 H 1.08996 * 109.52755 * 303.02927 * 19 3 2 36 36 H 1.09001 * 109.47962 * 297.62112 * 20 19 3 37 37 H 1.08998 * 109.48944 * 177.59498 * 20 19 3 38 38 H 1.08996 * 109.47919 * 301.17123 * 22 21 20 39 39 H 1.09003 * 109.48545 * 181.14974 * 22 21 20 40 40 H 1.08993 * 109.52199 * 182.48014 * 23 22 21 41 41 H 1.09001 * 109.52286 * 62.29372 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6285 2.0272 1.2668 5 8 1.4278 3.2185 1.2462 6 8 1.5115 1.3465 2.4178 7 6 1.1403 2.1064 3.5981 8 6 1.0573 1.1678 4.8035 9 8 2.3547 0.6399 5.0863 10 6 2.3883 -0.2533 6.2013 11 6 3.7972 -0.7471 6.4072 12 1 4.5879 -0.4119 5.7523 13 6 4.0769 -1.6258 7.4321 14 7 5.3065 -2.0563 7.6121 15 14 2.7093 -2.2049 8.5652 16 1 2.0945 -3.4371 8.0095 17 1 3.2697 -2.4943 9.9096 18 1 1.6767 -1.1437 8.6773 19 6 3.5352 1.1895 -0.0840 20 6 3.9164 0.5260 -1.4099 21 8 3.3866 1.2918 -2.4939 22 6 1.9613 1.3945 -2.4938 23 6 1.5015 2.0929 -1.2114 24 1 -0.3633 0.4089 -0.9428 25 1 -0.3633 -1.0210 0.1172 26 1 -0.3634 0.6119 0.8256 27 1 0.1708 2.5777 3.4367 28 1 1.8907 2.8742 3.7868 29 1 0.6930 1.7203 5.6697 30 1 0.3727 0.3495 4.5804 31 1 2.0519 0.2700 7.0963 32 1 1.7313 -1.1012 6.0076 33 1 5.5032 -2.6748 8.3330 34 1 3.9795 2.1835 -0.0332 35 1 3.9006 0.5833 0.7449 36 1 3.5057 -0.4831 -1.4427 37 1 5.0021 0.4794 -1.4943 38 1 1.5250 0.3967 -2.5409 39 1 1.6384 1.9736 -3.3590 40 1 0.4125 2.1328 -1.1888 41 1 1.9047 3.1052 -1.1834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815246771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:56 Heat of formation + Delta-G solvation = -243.743915 kcal Electronic energy + Delta-G solvation = -23978.993269 eV Core-core repulsion = 20244.863154 eV Total energy + Delta-G solvation = -3734.130115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33372 -40.45144 -38.86134 -38.23807 -37.60859 -34.90790 -33.75444 -32.32908 -31.90397 -29.67140 -28.06075 -27.01224 -24.76126 -24.15862 -23.87803 -22.69211 -21.00546 -19.35555 -19.13669 -18.28408 -18.09156 -17.62582 -17.16085 -16.93113 -16.69703 -16.40944 -16.37936 -16.07471 -15.53833 -15.44631 -14.78989 -14.47547 -14.41576 -14.07695 -13.92339 -13.82331 -13.44851 -13.38461 -13.03383 -12.72862 -12.67101 -12.57279 -12.33682 -12.19135 -11.90510 -11.79153 -11.76959 -11.40809 -11.38475 -10.96201 -10.90571 -10.58928 -10.42873 -8.38101 -6.46964 0.82096 1.33462 1.37099 1.41224 1.47613 2.29072 2.45318 2.89119 2.90283 2.94577 3.24606 3.39640 3.47251 3.82781 3.84092 4.03791 4.16958 4.20599 4.26588 4.30528 4.33698 4.37046 4.43149 4.49747 4.52791 4.61705 4.63288 4.72023 4.75144 4.88560 4.93007 4.97195 5.02082 5.22236 5.40743 5.78904 5.89126 6.15651 6.48947 6.56764 6.68191 7.17300 8.79219 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.022657 B = 0.003622 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.548596 B = 7728.062910 C = 8232.870307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.367 6.367 3 C 0.132 3.868 4 C 0.440 3.560 5 O -0.523 6.523 6 O -0.347 6.347 7 C 0.068 3.932 8 C 0.052 3.948 9 O -0.408 6.408 10 C 0.179 3.821 11 C -0.550 4.550 12 H 0.027 0.973 13 C 0.013 3.987 14 N -0.943 5.943 15 Si 0.958 3.042 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.242 1.242 19 C -0.147 4.147 20 C 0.072 3.928 21 O -0.393 6.393 22 C 0.067 3.933 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.033 0.967 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.274 0.726 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 6.277 -18.752 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.285 6.285 3 C 0.090 3.910 4 C 0.283 3.717 5 O -0.413 6.413 6 O -0.262 6.262 7 C -0.005 4.005 8 C -0.025 4.025 9 O -0.328 6.328 10 C 0.104 3.896 11 C -0.588 4.588 12 H 0.045 0.955 13 C -0.185 4.185 14 N -0.582 5.582 15 Si 0.779 3.221 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.165 1.165 19 C -0.185 4.185 20 C -0.004 4.004 21 O -0.312 6.312 22 C -0.010 4.010 23 C -0.204 4.204 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.052 0.948 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.733 6.480 -18.850 24.206 hybrid contribution -0.480 -0.024 1.380 1.462 sum -14.213 6.455 -17.470 23.428 Atomic orbital electron populations 1.23134 0.79252 1.04713 1.01009 1.88058 1.21782 1.24343 1.94347 1.21606 0.96818 0.84290 0.88243 1.25079 0.73032 0.86873 0.86671 1.90626 1.46902 1.16877 1.86910 1.86706 1.79019 1.42909 1.17585 1.23323 1.02162 0.93780 0.81273 1.22733 0.86491 0.97480 0.95779 1.87922 1.29321 1.63939 1.51576 1.20363 0.95821 0.88499 0.84948 1.21166 0.94033 1.28075 1.15478 0.95483 1.25873 0.98896 0.95094 0.98647 1.70036 1.21585 1.33487 1.33059 0.85578 0.78850 0.80005 0.77716 1.18343 1.19870 1.16485 1.22311 0.90197 1.04095 1.01919 1.22565 1.00616 0.94130 0.83099 1.87922 1.21543 1.73803 1.47919 1.22697 0.80801 1.00924 0.96533 1.22731 1.03414 1.00656 0.93574 0.90943 0.87218 0.94832 0.87025 0.91383 0.88965 0.91609 0.96318 0.96808 0.91740 0.89048 0.89852 0.91487 0.86501 0.91481 0.85783 0.88352 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.13 113.37 1.15 1.40 16 2 O -0.37 -8.85 9.12 -135.90 -1.24 -10.09 16 3 C 0.13 3.22 0.68 -11.42 -0.01 3.22 16 4 C 0.44 13.20 5.55 71.24 0.40 13.60 16 5 O -0.52 -16.85 15.78 21.97 0.35 -16.50 16 6 O -0.35 -11.61 9.62 -45.03 -0.43 -12.04 16 7 C 0.07 2.03 5.84 71.98 0.42 2.45 16 8 C 0.05 1.69 6.33 71.98 0.46 2.15 16 9 O -0.41 -19.17 10.30 -145.56 -1.50 -20.67 16 10 C 0.18 8.94 4.76 71.24 0.34 9.28 16 11 C -0.55 -33.81 9.99 25.60 0.26 -33.55 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 13 C 0.01 0.76 5.47 84.65 0.46 1.23 16 14 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 15 Si 0.96 42.84 27.47 68.60 1.88 44.72 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 19 C -0.15 -3.58 5.13 30.68 0.16 -3.42 16 20 C 0.07 1.44 6.70 72.01 0.48 1.93 16 21 O -0.39 -7.98 10.77 -148.98 -1.60 -9.59 16 22 C 0.07 1.03 6.69 72.01 0.48 1.52 16 23 C -0.17 -3.08 4.14 30.68 0.13 -2.95 16 24 H 0.07 0.88 6.68 -2.39 -0.02 0.87 16 25 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.03 0.66 6.83 -2.39 -0.02 0.64 16 27 H 0.11 2.57 8.13 -2.39 -0.02 2.55 16 28 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 32 H 0.01 0.66 7.57 -2.39 -0.02 0.65 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 1.32 7.82 -2.39 -0.02 1.30 16 37 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 0.95 7.82 -2.39 -0.02 0.93 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.50 6.50 -2.39 -0.02 1.48 16 41 H 0.09 1.83 7.77 -2.39 -0.02 1.81 16 Total: -1.00 -76.65 337.00 3.43 -73.22 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.96 Total: 13.34 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 4.72 Total: -3.16 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.30 Total: -59.24 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -4.43 Total: -68.89 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -76.65 3.43 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815246771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.527 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds