Wall clock time and date at job start Tue Mar 31 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81398 * 107.17030 * 2 1 4 4 O 1.42104 * 113.54072 * 233.79949 * 2 1 3 5 5 N 1.49355 * 107.52258 * 115.33916 * 2 1 3 6 6 C 1.32421 * 119.99961 * 64.89250 * 5 2 1 7 7 O 1.21549 * 120.00204 * 0.02562 * 6 5 2 8 8 C 1.50696 * 119.99782 * 179.97438 * 6 5 2 9 9 N 1.46905 * 109.47108 * 179.97438 * 8 6 5 10 10 C 1.46898 * 111.00168 * 190.00127 * 9 8 6 11 11 C 1.50697 * 109.47043 * 68.56683 * 10 9 8 12 12 H 1.08003 * 120.00026 * 355.80033 * 11 10 9 13 13 C 1.37876 * 119.99916 * 175.79863 * 11 10 9 14 14 N 1.31507 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99845 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47010 * 59.99867 * 15 13 11 17 17 H 1.48500 * 109.46926 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46962 * 299.99846 * 15 13 11 19 19 C 1.46908 * 110.99747 * 66.04728 * 9 8 6 20 20 C 1.52994 * 109.47379 * 199.98311 * 19 9 8 21 21 C 1.53002 * 117.49804 * 242.64151 * 20 19 9 22 22 C 1.52997 * 117.49751 * 174.01708 * 20 19 9 23 23 H 1.08999 * 109.47416 * 306.19964 * 1 2 3 24 24 H 1.08996 * 109.47559 * 66.19760 * 1 2 3 25 25 H 1.09001 * 109.47350 * 186.20409 * 1 2 3 26 26 H 1.08992 * 109.47447 * 175.34078 * 3 2 1 27 27 H 1.09004 * 109.46699 * 295.34048 * 3 2 1 28 28 H 1.08996 * 109.46845 * 55.33809 * 3 2 1 29 29 H 1.09000 * 109.47033 * 60.01076 * 8 6 5 30 30 H 1.08996 * 109.47419 * 300.00360 * 8 6 5 31 31 H 1.09007 * 109.47036 * 188.56871 * 10 9 8 32 32 H 1.09000 * 109.46901 * 308.56353 * 10 9 8 33 33 H 0.97003 * 120.00392 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47172 * 319.98869 * 19 9 8 35 35 H 1.09006 * 109.46430 * 79.98228 * 19 9 8 36 36 H 1.08997 * 115.54873 * 28.34644 * 20 19 9 37 37 H 1.09000 * 117.50053 * 359.97438 * 21 20 19 38 38 H 1.08999 * 117.49723 * 145.02321 * 21 20 19 39 39 H 1.09006 * 117.49802 * 214.97764 * 22 20 19 40 40 H 1.08995 * 117.50242 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2637 -0.6095 1.2872 6 6 1.9990 -1.8810 1.5458 7 8 1.3905 -2.5522 0.7355 8 6 2.4532 -2.4961 2.8444 9 7 2.0396 -3.9050 2.8899 10 6 2.2520 -4.4731 4.2279 11 6 1.2896 -3.8414 5.2004 12 1 0.6369 -3.0452 4.8741 13 6 1.2423 -4.2800 6.5067 14 7 2.0374 -5.2492 6.9041 15 14 0.0488 -3.4975 7.7120 16 1 -1.3409 -3.6802 7.2216 17 1 0.1940 -4.1425 9.0416 18 1 0.3452 -2.0471 7.8309 19 6 2.7398 -4.6926 1.8663 20 6 1.9645 -5.9838 1.5975 21 6 2.6649 -7.3070 1.9128 22 6 2.4566 -6.8791 0.4586 23 1 -0.3634 0.6069 0.8293 24 1 -0.3634 0.4147 -0.9402 25 1 -0.3634 -1.0216 0.1111 26 1 3.4353 1.7780 0.0835 27 1 2.0365 2.2101 -0.9288 28 1 1.8983 2.2528 0.8453 29 1 2.0023 -1.9585 3.6784 30 1 3.5390 -2.4333 2.9160 31 1 2.0830 -5.5495 4.1966 32 1 3.2749 -4.2751 4.5484 33 1 2.0044 -5.5575 7.8232 34 1 2.8096 -4.1123 0.9462 35 1 3.7419 -4.9370 2.2187 36 1 0.8891 -5.9304 1.7670 37 1 3.6783 -7.2576 2.3113 38 1 2.0503 -8.1245 2.2898 39 1 1.7049 -7.4151 -0.1210 40 1 3.3329 -6.5485 -0.0988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878159614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:00 Heat of formation + Delta-G solvation = 13.700118 kcal Electronic energy + Delta-G solvation = -21520.361410 eV Core-core repulsion = 18272.440528 eV Total energy + Delta-G solvation = -3247.920882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.36654 -37.23636 -36.42175 -35.01310 -32.97471 -32.33524 -30.35300 -29.40012 -27.79753 -27.44045 -24.06452 -21.92406 -21.61142 -20.24468 -19.34491 -18.06045 -16.77334 -16.39604 -16.13631 -16.08409 -15.30953 -14.64876 -14.49983 -14.18004 -14.02029 -13.78602 -13.59280 -13.47843 -13.39743 -13.15603 -12.67434 -12.26381 -11.98698 -11.72228 -11.30470 -11.20041 -11.10596 -10.94842 -10.67754 -10.58562 -10.53090 -9.90370 -9.72507 -9.66047 -9.47895 -9.35500 -9.12858 -8.83004 -8.32484 -7.05048 -5.92314 -3.93005 -0.80686 2.23863 2.85476 3.19094 3.38842 3.42800 3.45726 3.85757 4.17718 4.38000 4.45812 4.51785 4.57785 4.73746 5.01905 5.05807 5.41899 5.48596 5.53935 5.59724 5.66335 5.87250 6.12700 6.20171 6.21475 6.44403 6.49828 6.54070 6.62863 6.69726 6.85873 7.04691 7.45221 7.50723 7.91954 8.21645 8.34448 8.59783 8.72615 9.14021 9.70121 11.18383 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.005488 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.733798 B = 5100.359568 C = 6786.019596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.292 3.708 3 C -0.538 4.538 4 O -0.927 6.927 5 N -1.124 6.124 6 C 0.548 3.452 7 O -0.556 6.556 8 C 0.075 3.925 9 N -0.523 5.523 10 C 0.195 3.805 11 C -0.505 4.505 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.085 3.915 20 C -0.117 4.117 21 C -0.183 4.183 22 C -0.190 4.190 23 H 0.130 0.870 24 H 0.118 0.882 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.134 0.866 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.042 0.958 32 H -0.013 1.013 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.019 0.981 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 14.576 -14.405 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.488 3.512 3 C -0.696 4.696 4 O -0.913 6.913 5 N -1.035 6.035 6 C 0.335 3.665 7 O -0.435 6.435 8 C -0.060 4.060 9 N -0.248 5.248 10 C 0.070 3.930 11 C -0.544 4.544 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.043 4.043 20 C -0.136 4.136 21 C -0.220 4.220 22 C -0.227 4.227 23 H 0.149 0.851 24 H 0.137 0.863 25 H 0.164 0.836 26 H 0.165 0.835 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.578 13.847 -15.010 20.430 hybrid contribution -0.391 0.515 0.877 1.089 sum -0.968 14.361 -14.133 20.173 Atomic orbital electron populations 1.30109 1.24324 1.13465 1.10382 1.13116 0.80173 0.80983 0.76955 1.28981 1.13896 1.14727 1.12025 1.93547 1.73421 1.62501 1.61828 1.70762 1.59211 1.28491 1.45024 1.20233 0.76371 0.80949 0.88905 1.90799 1.41091 1.64166 1.47408 1.21571 0.98802 0.91445 0.94133 1.61800 1.56768 0.99272 1.06965 1.19783 0.94897 0.96204 0.82152 1.21157 1.20423 1.19094 0.93748 0.92045 1.24961 0.96012 0.95232 0.98295 1.69951 1.38542 1.27896 1.17380 0.86607 0.81631 0.79320 0.80079 1.20291 1.21461 1.20337 1.21659 0.93228 0.93290 0.96154 1.22171 1.00417 0.90484 1.00511 1.22980 1.01842 0.99510 0.97686 1.22899 1.03072 1.05245 0.91518 0.85132 0.86297 0.83593 0.83483 0.84763 0.83680 0.86587 0.93135 0.93972 0.99482 0.92992 0.90762 0.96246 0.87200 0.89362 0.89362 0.89542 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.92 10.55 101.05 1.07 -3.85 16 2 S 2.29 22.79 4.53 -107.50 -0.49 22.30 16 3 C -0.54 -1.61 10.89 101.05 1.10 -0.50 16 4 O -0.93 -14.46 17.28 -51.80 -0.90 -15.36 16 5 N -1.12 -16.74 10.20 30.51 0.31 -16.43 16 6 C 0.55 10.83 6.88 -12.03 -0.08 10.75 16 7 O -0.56 -12.10 12.55 -11.25 -0.14 -12.24 16 8 C 0.07 1.61 5.37 -4.97 -0.03 1.59 16 9 N -0.52 -12.55 4.14 -237.51 -0.98 -13.53 16 10 C 0.19 5.29 4.55 -4.98 -0.02 5.26 16 11 C -0.51 -14.47 8.48 -34.44 -0.29 -14.76 16 12 H 0.06 1.73 7.20 -52.48 -0.38 1.35 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 15 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 C 0.09 1.87 4.77 -3.82 -0.02 1.85 16 20 C -0.12 -2.40 5.19 -90.62 -0.47 -2.87 16 21 C -0.18 -3.34 10.18 -26.73 -0.27 -3.62 16 22 C -0.19 -3.23 10.25 -26.73 -0.27 -3.50 16 23 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.15 1.70 7.07 -51.92 -0.37 1.34 16 26 H 0.15 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.13 -0.02 8.14 -51.92 -0.42 -0.44 16 28 H 0.14 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.12 2.55 6.76 -51.93 -0.35 2.20 16 30 H 0.05 1.06 8.12 -51.93 -0.42 0.64 16 31 H 0.04 1.23 7.42 -51.92 -0.39 0.84 16 32 H -0.01 -0.36 8.10 -51.93 -0.42 -0.78 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.66 5.85 -51.93 -0.30 1.35 16 35 H 0.02 0.42 7.73 -51.93 -0.40 0.02 16 36 H 0.11 2.41 8.14 -51.93 -0.42 1.99 16 37 H 0.09 1.60 8.03 -51.93 -0.42 1.19 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -39.88 343.25 -7.08 -46.96 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.38 Total: 0.77 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 0.61 Total: -8.14 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.06 Total: -56.28 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.04 Total: -27.60 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.49 Total: 22.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -39.88 -7.08 -46.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.664 kcal (2) G-P(sol) polarization free energy of solvation -39.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds