Wall clock time and date at job start Tue Mar 31 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81398 * 107.17030 * 2 1 4 4 O 1.42104 * 113.54072 * 233.79949 * 2 1 3 5 5 N 1.49355 * 107.52258 * 115.33916 * 2 1 3 6 6 C 1.32421 * 119.99961 * 64.89250 * 5 2 1 7 7 O 1.21549 * 120.00204 * 0.02562 * 6 5 2 8 8 C 1.50696 * 119.99782 * 179.97438 * 6 5 2 9 9 N 1.46905 * 109.47108 * 179.97438 * 8 6 5 10 10 C 1.46898 * 111.00168 * 190.00127 * 9 8 6 11 11 C 1.50697 * 109.47043 * 68.56683 * 10 9 8 12 12 H 1.08003 * 120.00026 * 355.80033 * 11 10 9 13 13 C 1.37876 * 119.99916 * 175.79863 * 11 10 9 14 14 N 1.31507 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99845 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47010 * 59.99867 * 15 13 11 17 17 H 1.48500 * 109.46926 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46962 * 299.99846 * 15 13 11 19 19 C 1.46908 * 110.99747 * 66.04728 * 9 8 6 20 20 C 1.52994 * 109.47379 * 199.98311 * 19 9 8 21 21 C 1.53002 * 117.49804 * 242.64151 * 20 19 9 22 22 C 1.52997 * 117.49751 * 174.01708 * 20 19 9 23 23 H 1.08999 * 109.47416 * 306.19964 * 1 2 3 24 24 H 1.08996 * 109.47559 * 66.19760 * 1 2 3 25 25 H 1.09001 * 109.47350 * 186.20409 * 1 2 3 26 26 H 1.08992 * 109.47447 * 175.34078 * 3 2 1 27 27 H 1.09004 * 109.46699 * 295.34048 * 3 2 1 28 28 H 1.08996 * 109.46845 * 55.33809 * 3 2 1 29 29 H 1.09000 * 109.47033 * 60.01076 * 8 6 5 30 30 H 1.08996 * 109.47419 * 300.00360 * 8 6 5 31 31 H 1.09007 * 109.47036 * 188.56871 * 10 9 8 32 32 H 1.09000 * 109.46901 * 308.56353 * 10 9 8 33 33 H 0.97003 * 120.00392 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47172 * 319.98869 * 19 9 8 35 35 H 1.09006 * 109.46430 * 79.98228 * 19 9 8 36 36 H 1.08997 * 115.54873 * 28.34644 * 20 19 9 37 37 H 1.09000 * 117.50053 * 359.97438 * 21 20 19 38 38 H 1.08999 * 117.49723 * 145.02321 * 21 20 19 39 39 H 1.09006 * 117.49802 * 214.97764 * 22 20 19 40 40 H 1.08995 * 117.50242 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2637 -0.6095 1.2872 6 6 1.9990 -1.8810 1.5458 7 8 1.3905 -2.5522 0.7355 8 6 2.4532 -2.4961 2.8444 9 7 2.0396 -3.9050 2.8899 10 6 2.2520 -4.4731 4.2279 11 6 1.2896 -3.8414 5.2004 12 1 0.6369 -3.0452 4.8741 13 6 1.2423 -4.2800 6.5067 14 7 2.0374 -5.2492 6.9041 15 14 0.0488 -3.4975 7.7120 16 1 -1.3409 -3.6802 7.2216 17 1 0.1940 -4.1425 9.0416 18 1 0.3452 -2.0471 7.8309 19 6 2.7398 -4.6926 1.8663 20 6 1.9645 -5.9838 1.5975 21 6 2.6649 -7.3070 1.9128 22 6 2.4566 -6.8791 0.4586 23 1 -0.3634 0.6069 0.8293 24 1 -0.3634 0.4147 -0.9402 25 1 -0.3634 -1.0216 0.1111 26 1 3.4353 1.7780 0.0835 27 1 2.0365 2.2101 -0.9288 28 1 1.8983 2.2528 0.8453 29 1 2.0023 -1.9585 3.6784 30 1 3.5390 -2.4333 2.9160 31 1 2.0830 -5.5495 4.1966 32 1 3.2749 -4.2751 4.5484 33 1 2.0044 -5.5575 7.8232 34 1 2.8096 -4.1123 0.9462 35 1 3.7419 -4.9370 2.2187 36 1 0.8891 -5.9304 1.7670 37 1 3.6783 -7.2576 2.3113 38 1 2.0503 -8.1245 2.2898 39 1 1.7049 -7.4151 -0.1210 40 1 3.3329 -6.5485 -0.0988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:59 Heat of formation + Delta-G solvation = -19.089195 kcal Electronic energy + Delta-G solvation = -21521.783261 eV Core-core repulsion = 18272.440528 eV Total energy + Delta-G solvation = -3249.342733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85037 -38.86985 -37.40074 -36.78435 -34.54325 -34.20359 -30.80961 -29.98601 -29.70553 -29.28603 -26.03157 -23.57655 -23.17654 -21.77639 -21.09149 -19.08797 -18.49559 -18.03360 -17.29735 -17.12605 -16.80665 -16.41913 -16.04526 -15.59105 -15.44338 -15.11717 -14.57876 -14.35709 -14.08646 -14.05237 -13.98524 -13.82651 -13.59914 -13.21063 -12.99776 -12.91732 -12.62329 -12.53024 -12.37532 -12.28389 -12.06718 -11.92716 -11.41801 -11.08416 -10.97006 -10.84176 -10.65730 -10.57645 -10.43045 -9.00188 -8.14824 -6.25226 -1.44299 1.33485 1.42974 1.47618 1.55217 1.74631 2.17785 2.44401 2.92293 3.11174 3.16915 3.30695 3.88212 3.97916 4.02970 4.05269 4.06936 4.14341 4.19466 4.27338 4.45102 4.50029 4.71555 4.73322 4.74711 4.85803 4.86374 4.94709 5.00704 5.20422 5.23546 5.28997 5.38709 5.50868 5.69491 6.09059 6.34102 6.62765 6.88505 7.16172 7.43472 8.96243 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.005488 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.733798 B = 5100.359568 C = 6786.019596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.609 4.609 2 S 2.261 3.739 3 C -0.486 4.486 4 O -0.997 6.997 5 N -1.142 6.142 6 C 0.546 3.454 7 O -0.591 6.591 8 C 0.067 3.933 9 N -0.531 5.531 10 C 0.214 3.786 11 C -0.524 4.524 12 H 0.061 0.939 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.093 3.907 20 C -0.152 4.152 21 C -0.180 4.180 22 C -0.157 4.157 23 H 0.164 0.836 24 H 0.162 0.838 25 H 0.104 0.896 26 H 0.156 0.844 27 H 0.184 0.816 28 H 0.183 0.817 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.015 0.985 32 H -0.040 1.040 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.013 0.987 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 18.041 -15.290 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.766 4.766 2 S 2.463 3.537 3 C -0.646 4.646 4 O -0.983 6.983 5 N -1.050 6.050 6 C 0.332 3.668 7 O -0.473 6.473 8 C -0.066 4.066 9 N -0.256 5.256 10 C 0.088 3.912 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.795 3.205 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.035 4.035 20 C -0.171 4.171 21 C -0.217 4.217 22 C -0.195 4.195 23 H 0.182 0.818 24 H 0.180 0.820 25 H 0.122 0.878 26 H 0.174 0.826 27 H 0.202 0.798 28 H 0.201 0.799 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.033 0.967 32 H -0.023 1.023 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.758 17.309 -15.899 23.569 hybrid contribution -0.026 -0.355 1.048 1.107 sum -1.783 16.954 -14.851 22.609 Atomic orbital electron populations 1.29833 1.20450 1.12025 1.14245 1.13657 0.81266 0.85065 0.73687 1.28915 1.14504 1.04840 1.16335 1.93505 1.74993 1.67906 1.61923 1.70258 1.61277 1.26276 1.47160 1.19768 0.76249 0.82933 0.87817 1.90765 1.42732 1.65287 1.48475 1.21573 0.98574 0.90242 0.96217 1.61773 1.57425 1.00779 1.05620 1.19401 0.93138 0.94707 0.83973 1.21405 1.20796 1.19446 0.94599 0.92059 1.25911 0.97795 0.95575 1.00169 1.70093 1.40086 1.29154 1.18023 0.85425 0.78928 0.78950 0.77229 1.19622 1.20770 1.18707 1.21586 0.92997 0.93801 0.95079 1.22073 0.99234 0.90918 1.04835 1.23016 1.01454 0.98130 0.99130 1.22995 1.03418 1.02348 0.90705 0.81810 0.82016 0.87762 0.82560 0.79840 0.79944 0.87645 0.93484 0.96711 1.02270 0.92708 0.91386 0.96852 0.89296 0.89607 0.88458 0.87158 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -8.00 10.55 113.37 1.20 -6.80 16 2 S 2.26 41.49 4.53 -56.49 -0.26 41.23 16 3 C -0.49 0.03 10.89 113.37 1.23 1.27 16 4 O -1.00 -31.76 17.28 -133.14 -2.30 -34.06 16 5 N -1.14 -34.46 10.20 -176.97 -1.80 -36.26 16 6 C 0.55 22.82 6.88 88.02 0.61 23.42 16 7 O -0.59 -27.41 12.55 11.97 0.15 -27.26 16 8 C 0.07 3.12 5.37 85.55 0.46 3.58 16 9 N -0.53 -27.39 4.14 -905.34 -3.75 -31.14 16 10 C 0.21 12.43 4.55 85.56 0.39 12.82 16 11 C -0.52 -31.25 8.48 25.60 0.22 -31.04 16 12 H 0.06 3.57 7.20 -2.91 -0.02 3.55 16 13 C 0.00 0.20 5.46 84.66 0.46 0.67 16 14 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 15 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 C 0.09 4.40 4.77 86.30 0.41 4.81 16 20 C -0.15 -6.54 5.19 -10.80 -0.06 -6.60 16 21 C -0.18 -6.75 10.18 30.60 0.31 -6.44 16 22 C -0.16 -5.31 10.25 30.60 0.31 -5.00 16 23 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 2.46 7.07 -2.39 -0.02 2.44 16 26 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.18 -1.52 8.14 -2.39 -0.02 -1.54 16 28 H 0.18 -1.11 8.14 -2.39 -0.02 -1.13 16 29 H 0.11 4.96 6.76 -2.39 -0.02 4.94 16 30 H 0.05 2.15 8.12 -2.39 -0.02 2.13 16 31 H 0.01 0.92 7.42 -2.38 -0.02 0.91 16 32 H -0.04 -2.50 8.10 -2.39 -0.02 -2.52 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 34 H 0.07 3.27 5.85 -2.39 -0.01 3.25 16 35 H 0.01 0.63 7.73 -2.38 -0.02 0.61 16 36 H 0.09 4.17 8.14 -2.39 -0.02 4.15 16 37 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 38 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -96.50 343.25 0.91 -95.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.01 Total: 11.57 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.54 Total: -9.32 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -5.27 Total: -124.95 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -2.15 Total: -61.32 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 41.49 SS G_CDS: -0.26 Total: 41.23 kcal Total: -96.50 0.91 -95.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.507 kcal (2) G-P(sol) polarization free energy of solvation -96.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds