Wall clock time and date at job start Tue Mar 31 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47369 * 240.00262 * 3 2 1 5 5 H 1.48494 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00304 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 C 1.35312 * 125.87305 * 124.71532 * 15 14 13 17 17 C 1.35342 * 106.17908 * 179.90351 * 16 15 14 18 18 C 1.50702 * 126.75485 * 180.12221 * 17 16 15 19 19 C 1.52996 * 109.47215 * 125.29875 * 18 17 16 20 20 N 1.46896 * 109.47019 * 180.02562 * 19 18 17 21 21 N 1.33772 * 106.49524 * 0.35483 * 17 16 15 22 22 N 1.28635 * 108.88758 * 359.76902 * 21 17 16 23 23 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 24 24 C 1.38094 * 120.07047 * 359.77109 * 23 13 12 25 25 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 27 27 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 28 28 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 29 29 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 30 30 H 1.08004 * 126.90981 * 0.02562 * 16 15 14 31 31 H 1.09001 * 109.47448 * 245.30203 * 18 17 16 32 32 H 1.09005 * 109.46557 * 5.29744 * 18 17 16 33 33 H 1.09012 * 109.46913 * 300.00053 * 19 18 17 34 34 H 1.09000 * 109.47339 * 59.99941 * 19 18 17 35 35 H 1.00891 * 111.00678 * 56.04413 * 20 19 18 36 36 H 1.00910 * 110.99984 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.96431 * 179.74134 * 23 13 12 38 38 H 1.08005 * 120.03539 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 6 5.8583 -7.9030 -1.4215 17 6 5.6334 -8.3809 -2.6676 18 6 6.6720 -8.8382 -3.6592 19 6 6.3523 -10.2645 -4.1114 20 7 7.3651 -10.7105 -5.0774 21 7 4.3080 -8.3625 -2.8480 22 7 3.7490 -7.9082 -1.7822 23 6 2.1872 -5.8886 0.3346 24 6 1.4365 -4.7345 0.2274 25 1 -0.4850 0.8401 0.0004 26 1 3.9526 -2.4846 -0.0025 27 1 5.2809 -4.5483 0.1790 28 1 5.3325 -6.8574 0.9266 29 1 3.8363 -7.8163 1.0271 30 1 6.8162 -7.7734 -0.9396 31 1 6.6673 -8.1735 -4.5230 32 1 7.6559 -8.8176 -3.1902 33 1 6.3571 -10.9292 -3.2474 34 1 5.3685 -10.2851 -4.5802 35 1 8.2929 -10.6393 -4.6875 36 1 7.1763 -11.6507 -5.3912 37 1 1.6952 -6.8454 0.4293 38 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881285720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:45 Heat of formation + Delta-G solvation = 90.659159 kcal Electronic energy + Delta-G solvation = -21322.443825 eV Core-core repulsion = 17974.708937 eV Total energy + Delta-G solvation = -3347.734887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.10938 -39.20227 -37.06555 -36.00799 -34.28679 -32.41627 -31.87135 -30.36761 -30.21169 -28.03755 -26.41238 -25.18888 -23.11073 -22.14830 -22.06035 -21.22023 -20.13165 -18.14066 -17.38070 -17.02832 -16.35084 -16.07233 -15.34141 -14.89412 -14.81388 -14.63805 -14.39632 -14.08488 -13.73169 -13.69262 -13.13064 -12.91751 -12.83090 -12.35917 -12.18505 -11.75753 -11.65481 -11.41422 -11.33680 -11.17293 -10.94470 -10.79428 -10.57693 -10.53304 -9.86151 -9.47974 -9.09994 -8.96913 -8.94719 -8.32741 -7.40993 -6.56630 -4.15502 1.69463 1.89653 2.10544 2.63584 2.78385 3.06865 3.08560 3.10964 3.87410 4.15806 4.41010 4.46973 4.59049 4.84719 4.94370 4.96835 4.98248 5.04324 5.14663 5.24354 5.29935 5.38685 5.48111 5.69650 5.76589 5.85040 6.03990 6.07607 6.22687 6.27396 6.52812 6.71300 6.73517 6.81076 6.89695 7.08366 7.11831 7.16168 7.29987 7.65323 7.87561 8.69751 8.88002 9.55205 10.60469 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002889 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.311844 B = 9689.566635 C =10108.206826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.169 6.169 10 C 0.166 3.834 11 C -0.239 4.239 12 C -0.046 4.046 13 C -0.227 4.227 14 C 0.173 3.827 15 N -0.277 5.277 16 C -0.057 4.057 17 C -0.029 4.029 18 C -0.026 4.026 19 C 0.068 3.932 20 N -0.852 5.852 21 N -0.276 5.276 22 N -0.067 5.067 23 C -0.035 4.035 24 C -0.195 4.195 25 H 0.273 0.727 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.184 0.816 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.338 0.662 36 H 0.342 0.658 37 H 0.115 0.885 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.585 -15.706 -0.094 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.111 3.889 11 C -0.258 4.258 12 C -0.065 4.065 13 C -0.229 4.229 14 C 0.054 3.946 15 N -0.071 5.071 16 C -0.209 4.209 17 C -0.168 4.168 18 C -0.066 4.066 19 C -0.063 4.063 20 N -0.382 5.382 21 N -0.142 5.142 22 N -0.047 5.047 23 C -0.054 4.054 24 C -0.215 4.215 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.201 0.799 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.330 -14.881 -0.841 19.343 hybrid contribution 1.899 0.296 1.157 2.243 sum 14.228 -14.585 0.316 20.378 Atomic orbital electron populations 1.70026 1.06036 1.28115 1.44829 1.25340 0.95886 0.98994 0.96206 0.85746 0.78744 0.79496 0.79279 1.19375 1.20122 1.19389 1.21326 0.91866 0.80693 1.53196 0.88933 1.83980 1.34561 1.11602 1.76924 1.19455 0.90289 0.88068 0.91115 1.21101 0.93814 0.98839 1.12047 1.20553 0.98128 0.91759 0.96087 1.18938 0.93781 0.92384 1.17829 1.20836 1.01602 0.94793 0.77370 1.47890 1.04576 1.40174 1.14424 1.23342 0.91853 1.08873 0.96785 1.21816 0.93389 1.06436 0.95160 1.19745 0.94113 0.96453 0.96304 1.21717 0.96537 0.94547 0.93545 1.58703 1.05670 1.30656 1.43145 1.75059 1.06072 1.16545 1.16534 1.78336 1.17343 1.14911 0.94104 1.20470 0.92433 0.96964 0.95505 1.20212 0.99827 0.90172 1.11247 0.91710 0.85321 0.87612 0.87831 0.88334 0.79895 0.89482 0.90719 0.95704 0.90000 0.85025 0.84523 0.86681 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.74 9.76 0.04 0.00 -4.74 16 10 C 0.17 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.24 -5.02 9.17 -39.40 -0.36 -5.38 16 12 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 13 C -0.23 -3.62 5.25 -104.57 -0.55 -4.17 16 14 C 0.17 2.02 6.58 -5.19 -0.03 1.98 16 15 N -0.28 -3.79 3.43 -62.44 -0.21 -4.01 16 16 C -0.06 -0.66 11.49 -17.05 -0.20 -0.85 16 17 C -0.03 -0.37 6.50 -82.78 -0.54 -0.91 16 18 C -0.03 -0.26 6.05 -27.88 -0.17 -0.43 16 19 C 0.07 0.63 6.76 -3.83 -0.03 0.60 16 20 N -0.85 -6.42 9.62 -10.37 -0.10 -6.52 16 21 N -0.28 -4.58 12.40 33.29 0.41 -4.16 16 22 N -0.07 -1.15 12.92 60.35 0.78 -0.37 16 23 C -0.03 -0.61 9.69 -39.61 -0.38 -0.99 16 24 C -0.20 -4.07 9.99 -39.40 -0.39 -4.46 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.10 0.87 8.01 -51.93 -0.42 0.45 16 29 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.18 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.34 1.93 8.99 -39.30 -0.35 1.57 16 36 H 0.34 2.07 9.08 -39.29 -0.36 1.71 16 37 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -32.98 333.60 -6.09 -39.06 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.63 Total: 6.22 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.10 Total: -21.62 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 1.64 Total: -38.98 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.98 -6.09 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.722 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds