Wall clock time and date at job start Tue Mar 31 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47369 * 240.00262 * 3 2 1 5 5 H 1.48494 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00304 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 C 1.35312 * 125.87305 * 124.71532 * 15 14 13 17 17 C 1.35342 * 106.17908 * 179.90351 * 16 15 14 18 18 C 1.50702 * 126.75485 * 180.12221 * 17 16 15 19 19 C 1.52996 * 109.47215 * 125.29875 * 18 17 16 20 20 N 1.46896 * 109.47019 * 180.02562 * 19 18 17 21 21 N 1.33772 * 106.49524 * 0.35483 * 17 16 15 22 22 N 1.28635 * 108.88758 * 359.76902 * 21 17 16 23 23 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 24 24 C 1.38094 * 120.07047 * 359.77109 * 23 13 12 25 25 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 27 27 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 28 28 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 29 29 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 30 30 H 1.08004 * 126.90981 * 0.02562 * 16 15 14 31 31 H 1.09001 * 109.47448 * 245.30203 * 18 17 16 32 32 H 1.09005 * 109.46557 * 5.29744 * 18 17 16 33 33 H 1.09012 * 109.46913 * 300.00053 * 19 18 17 34 34 H 1.09000 * 109.47339 * 59.99941 * 19 18 17 35 35 H 1.00891 * 111.00678 * 56.04413 * 20 19 18 36 36 H 1.00910 * 110.99984 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.96431 * 179.74134 * 23 13 12 38 38 H 1.08005 * 120.03539 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 6 5.8583 -7.9030 -1.4215 17 6 5.6334 -8.3809 -2.6676 18 6 6.6720 -8.8382 -3.6592 19 6 6.3523 -10.2645 -4.1114 20 7 7.3651 -10.7105 -5.0774 21 7 4.3080 -8.3625 -2.8480 22 7 3.7490 -7.9082 -1.7822 23 6 2.1872 -5.8886 0.3346 24 6 1.4365 -4.7345 0.2274 25 1 -0.4850 0.8401 0.0004 26 1 3.9526 -2.4846 -0.0025 27 1 5.2809 -4.5483 0.1790 28 1 5.3325 -6.8574 0.9266 29 1 3.8363 -7.8163 1.0271 30 1 6.8162 -7.7734 -0.9396 31 1 6.6673 -8.1735 -4.5230 32 1 7.6559 -8.8176 -3.1902 33 1 6.3571 -10.9292 -3.2474 34 1 5.3685 -10.2851 -4.5802 35 1 8.2929 -10.6393 -4.6875 36 1 7.1763 -11.6507 -5.3912 37 1 1.6952 -6.8454 0.4293 38 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881285720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:44 Heat of formation + Delta-G solvation = 65.815829 kcal Electronic energy + Delta-G solvation = -21323.521112 eV Core-core repulsion = 17974.708937 eV Total energy + Delta-G solvation = -3348.812175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.12312 -40.86471 -38.64511 -36.81618 -35.40729 -34.30128 -32.74289 -31.90494 -31.57868 -28.89272 -27.92542 -26.85461 -24.02829 -23.67343 -23.15841 -22.43434 -21.25823 -19.94002 -18.98006 -18.10687 -17.49205 -16.78818 -16.50233 -16.37501 -16.08002 -15.89619 -15.63059 -15.48596 -15.20663 -14.79441 -14.56218 -14.34028 -13.84553 -13.63614 -13.39385 -13.08401 -13.01679 -12.62143 -12.57796 -12.43360 -12.36916 -12.24622 -12.17400 -11.52445 -11.26360 -10.92997 -10.84321 -10.03099 -9.86350 -9.58847 -9.09866 -8.51870 -6.21127 0.39415 0.53373 0.80956 1.33127 1.42847 1.49917 1.62069 1.74697 2.14599 2.79317 3.12126 3.37020 3.43270 3.68299 3.72081 3.85474 4.06329 4.09812 4.18974 4.24187 4.34412 4.41248 4.47845 4.51335 4.63275 4.67635 4.89168 4.96026 5.08037 5.08574 5.19163 5.27441 5.35348 5.46763 5.62510 5.63461 5.77987 5.96753 6.10820 6.24338 6.66045 6.91995 7.65743 7.70519 8.70784 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002889 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.311844 B = 9689.566635 C =10108.206826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.021 2.979 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.417 4.417 8 H 0.105 0.895 9 O -0.229 6.229 10 C 0.125 3.875 11 C -0.250 4.250 12 C -0.042 4.042 13 C -0.197 4.197 14 C 0.170 3.830 15 N -0.279 5.279 16 C -0.035 4.035 17 C -0.043 4.043 18 C -0.022 4.022 19 C 0.074 3.926 20 N -0.857 5.857 21 N -0.313 5.313 22 N -0.119 5.119 23 C -0.033 4.033 24 C -0.213 4.213 25 H 0.274 0.726 26 H 0.122 0.878 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.122 0.878 30 H 0.236 0.764 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.351 0.649 36 H 0.350 0.650 37 H 0.142 0.858 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.261 -17.693 0.848 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.122 0.878 9 O -0.135 6.135 10 C 0.074 3.926 11 C -0.269 4.269 12 C -0.060 4.060 13 C -0.199 4.199 14 C 0.052 3.948 15 N -0.073 5.073 16 C -0.186 4.186 17 C -0.183 4.183 18 C -0.062 4.062 19 C -0.057 4.057 20 N -0.389 5.389 21 N -0.179 5.179 22 N -0.098 5.098 23 C -0.052 4.052 24 C -0.233 4.233 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.140 0.860 30 H 0.253 0.747 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.030 -16.939 0.101 24.020 hybrid contribution 0.653 0.443 0.856 1.164 sum 17.683 -16.497 0.957 24.202 Atomic orbital electron populations 1.70181 1.08135 1.29056 1.48251 1.26659 0.96872 1.02916 0.95604 0.84624 0.77404 0.74017 0.80033 1.18227 1.19647 1.17773 1.21826 0.92619 0.81274 1.53573 0.87816 1.83951 1.36196 1.12753 1.80583 1.20018 0.91856 0.87864 0.92873 1.21261 0.92901 1.00367 1.12363 1.21021 1.00209 0.90585 0.94205 1.19497 0.93523 0.94313 1.12534 1.21166 1.03807 0.92729 0.77078 1.47913 1.05072 1.39881 1.14404 1.24126 0.92635 1.06010 0.95873 1.22401 0.92609 1.06614 0.96710 1.19821 0.94895 0.95923 0.95537 1.21539 0.95706 0.94791 0.93688 1.58647 1.06054 1.31396 1.42788 1.75004 1.08372 1.17386 1.17141 1.78306 1.18844 1.17458 0.95203 1.20865 0.93562 0.96656 0.94076 1.20448 1.00039 0.90748 1.12041 0.91701 0.85986 0.83116 0.82757 0.85979 0.74734 0.90820 0.87208 0.95258 0.92838 0.83550 0.83624 0.83984 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.51 13.67 21.61 0.30 -56.21 16 2 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 3 Si 1.02 42.37 29.55 68.60 2.03 44.40 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.42 -24.18 9.49 67.92 0.64 -23.53 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -13.85 9.76 -22.77 -0.22 -14.08 16 10 C 0.13 6.23 6.65 22.58 0.15 6.38 16 11 C -0.25 -10.48 9.17 22.39 0.21 -10.27 16 12 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 13 C -0.20 -5.50 5.25 -19.83 -0.10 -5.61 16 14 C 0.17 2.92 6.58 85.63 0.56 3.49 16 15 N -0.28 -6.32 3.43 -351.47 -1.21 -7.53 16 16 C -0.03 -0.60 11.49 83.49 0.96 0.36 16 17 C -0.04 -0.98 6.50 41.60 0.27 -0.71 16 18 C -0.02 -0.36 6.05 29.85 0.18 -0.18 16 19 C 0.07 1.23 6.76 86.30 0.58 1.82 16 20 N -0.86 -10.99 9.62 -186.72 -1.80 -12.78 16 21 N -0.31 -9.97 12.40 -48.60 -0.60 -10.58 16 22 N -0.12 -3.81 12.92 37.02 0.48 -3.33 16 23 C -0.03 -1.10 9.69 22.25 0.22 -0.88 16 24 C -0.21 -9.21 9.99 22.39 0.22 -8.99 16 25 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 26 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 27 H 0.15 3.35 8.06 -2.92 -0.02 3.32 16 28 H 0.15 1.23 8.01 -2.38 -0.02 1.21 16 29 H 0.12 1.65 8.08 -2.39 -0.02 1.63 16 30 H 0.24 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 1.00 8.12 -2.38 -0.02 0.99 16 33 H 0.03 0.45 8.14 -2.38 -0.02 0.44 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.35 2.91 8.99 -89.70 -0.81 2.11 16 36 H 0.35 3.57 9.08 -89.69 -0.81 2.76 16 37 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -81.43 333.60 3.04 -78.39 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.51 Total: 21.75 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 4.57 Total: -40.03 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -2.83 Total: -90.43 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.22 Total: -14.08 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -81.43 3.04 -78.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.206 kcal (2) G-P(sol) polarization free energy of solvation -81.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds