Wall clock time and date at job start Tue Mar 31 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00234 * 2 1 4 4 C 1.50700 * 109.46751 * 274.99805 * 3 2 1 5 5 H 1.07997 * 120.00438 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00027 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99717 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00183 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46924 * 90.00403 * 8 6 4 10 10 H 1.48501 * 109.47124 * 210.00078 * 8 6 4 11 11 H 1.48500 * 109.47153 * 330.00317 * 8 6 4 12 12 S 1.65609 * 119.99930 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40382 * 135.99312 * 12 2 1 14 14 O 1.42099 * 106.39807 * 3.07131 * 12 2 1 15 15 N 1.65604 * 107.21647 * 249.53387 * 12 2 1 16 16 C 1.46499 * 120.00023 * 60.79056 * 15 12 2 17 17 C 1.53000 * 112.84858 * 184.87695 * 16 15 12 18 18 C 1.53002 * 117.49545 * 18.29523 * 17 16 15 19 19 C 1.53001 * 117.49951 * 309.67316 * 17 16 15 20 20 C 1.53789 * 113.61190 * 53.57495 * 16 15 12 21 21 C 1.53780 * 87.08167 * 270.88241 * 20 16 15 22 22 C 1.53774 * 113.61563 * 316.08020 * 16 15 12 23 23 H 1.09000 * 109.46962 * 273.24025 * 1 2 3 24 24 H 1.09002 * 109.46828 * 33.23501 * 1 2 3 25 25 H 1.08995 * 109.47314 * 153.24011 * 1 2 3 26 26 H 1.08997 * 109.47355 * 34.99658 * 3 2 1 27 27 H 1.09007 * 109.47346 * 155.00211 * 3 2 1 28 28 H 0.97002 * 120.00055 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99505 * 240.78874 * 15 12 2 30 30 H 1.08997 * 115.54933 * 163.99736 * 17 16 15 31 31 H 1.08996 * 117.50056 * 359.97438 * 18 17 16 32 32 H 1.08999 * 117.50028 * 145.02065 * 18 17 16 33 33 H 1.09000 * 117.49481 * 214.97438 * 19 17 16 34 34 H 1.08995 * 117.49976 * 359.97438 * 19 17 16 35 35 H 1.09000 * 113.61295 * 25.43416 * 20 16 15 36 36 H 1.09005 * 113.60950 * 156.33307 * 20 16 15 37 37 H 1.09001 * 113.61526 * 220.02644 * 21 20 16 38 38 H 1.08999 * 113.61467 * 89.11678 * 21 20 16 39 39 H 1.09005 * 113.61323 * 203.66648 * 22 16 15 40 40 H 1.08999 * 113.61393 * 334.47581 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 2.9998 2.9507 -1.6665 7 7 3.5026 3.6473 -0.6707 8 14 3.1777 3.5670 -3.4209 9 1 2.0167 4.4274 -3.7633 10 1 4.4307 4.3543 -3.5444 11 1 3.2268 2.4093 -4.3496 12 16 2.2930 -1.4342 0.0006 13 8 3.3427 -1.2920 -0.9464 14 8 1.3147 -2.4623 -0.0719 15 7 3.0171 -1.5815 1.4827 16 6 2.1987 -1.6209 2.6971 17 6 3.0360 -1.6400 3.9775 18 6 4.4953 -1.1921 3.8739 19 6 4.1615 -2.6723 4.0702 20 6 1.0972 -2.6937 2.6631 21 6 0.1902 -1.6299 2.0224 22 6 1.0708 -0.5758 2.7141 23 1 -0.3633 0.0581 1.0260 24 1 -0.3633 0.8596 -0.5633 25 1 -0.3634 -0.9175 -0.4627 26 1 1.6502 2.0043 0.5894 27 1 3.1859 1.1177 0.4343 28 1 3.9661 4.4809 -0.8472 29 1 3.9831 -1.6417 1.5466 30 1 2.4987 -1.3975 4.8943 31 1 4.8589 -0.8842 2.8935 32 1 4.9183 -0.6547 4.7226 33 1 4.3649 -3.1086 5.0482 34 1 4.3052 -3.3381 3.2193 35 1 1.3230 -3.5305 2.0021 36 1 0.7665 -3.0113 3.6520 37 1 -0.8355 -1.6515 2.3906 38 1 0.2501 -1.6030 0.9344 39 1 0.7328 -0.3144 3.7169 40 1 1.2758 0.2979 2.0955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885855827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:58 Heat of formation + Delta-G solvation = 21.785613 kcal Electronic energy + Delta-G solvation = -23166.431627 eV Core-core repulsion = 19918.861359 eV Total energy + Delta-G solvation = -3247.570268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24102 -37.12771 -36.10850 -35.24988 -35.16231 -32.56318 -32.00046 -28.04335 -25.78438 -25.45538 -24.90658 -22.32841 -22.29128 -20.79101 -19.76369 -18.71828 -17.61798 -16.76774 -16.44389 -15.77932 -15.40555 -15.12917 -14.53089 -14.29700 -14.16591 -13.45182 -13.37521 -13.11493 -12.51425 -12.33461 -12.23807 -12.13117 -11.62592 -11.49690 -11.35773 -11.17104 -11.15294 -11.08191 -10.76897 -10.69270 -10.56328 -10.44085 -10.19859 -10.02290 -9.92382 -9.77702 -9.51905 -9.00567 -8.45597 -8.04506 -6.07231 -4.10633 1.22507 3.31505 3.37968 3.40436 3.45805 3.75077 4.04075 4.44761 4.61811 4.62843 4.75835 4.99624 5.02715 5.10351 5.25405 5.27461 5.35351 5.45339 5.56297 5.63971 5.79580 5.86951 5.90420 6.01947 6.06587 6.11840 6.19268 6.26111 6.32756 6.41673 6.52194 6.56978 6.73984 7.13909 7.25221 7.40337 7.58250 7.91209 8.19497 8.92889 9.54713 11.01086 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.006275 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.286705 B = 4461.406887 C = 4853.367811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.996 5.996 3 C 0.259 3.741 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 S 2.787 3.213 13 O -0.968 6.968 14 O -0.992 6.992 15 N -1.108 6.108 16 C 0.194 3.806 17 C -0.136 4.136 18 C -0.179 4.179 19 C -0.180 4.180 20 C -0.146 4.146 21 C -0.204 4.204 22 C -0.172 4.172 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.412 0.588 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 -9.734 10.832 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.839 5.839 3 C 0.137 3.863 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.796 3.204 13 O -0.952 6.952 14 O -0.975 6.975 15 N -0.867 5.867 16 C 0.104 3.896 17 C -0.156 4.156 18 C -0.216 4.216 19 C -0.217 4.217 20 C -0.185 4.185 21 C -0.240 4.240 22 C -0.211 4.211 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.247 0.753 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.107 0.893 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.402 -10.180 10.118 14.751 hybrid contribution 0.610 0.795 -0.403 1.080 sum -2.792 -9.385 9.715 13.793 Atomic orbital electron populations 1.21843 0.80149 1.02567 1.01707 1.57575 1.14135 1.23225 1.88952 1.19007 0.90630 0.79002 0.97620 1.21522 1.35921 1.06076 0.92992 0.91980 1.24938 0.95200 0.96529 0.97469 1.69921 1.37512 1.15331 1.30902 0.86511 0.77475 0.78805 0.84772 1.20647 1.21134 1.19672 1.01800 0.72929 0.73228 0.72483 1.93633 1.57318 1.86425 1.57776 1.93450 1.60501 1.56820 1.86728 1.55871 1.17563 1.90590 1.22631 1.20412 0.88735 0.97202 0.83259 1.22301 0.90522 1.04863 0.97892 1.22998 0.97890 0.97133 1.03558 1.22949 1.03269 0.92453 1.02993 1.23480 0.95703 0.98055 1.01232 1.24602 0.98841 0.95272 1.05295 1.23987 0.95369 0.99106 1.02671 0.92227 0.90880 0.91379 0.94491 0.95041 0.92740 0.75306 0.86773 0.88280 0.88585 0.88858 0.88691 0.90013 0.89892 0.91159 0.84815 0.89264 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 8.36 59.85 0.50 1.90 16 2 N -1.00 -19.96 1.54 -123.05 -0.19 -20.15 16 3 C 0.26 6.26 4.30 -5.19 -0.02 6.23 16 4 C -0.53 -14.53 9.38 -34.44 -0.32 -14.85 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 S 2.79 54.58 5.35 -107.50 -0.57 54.01 16 13 O -0.97 -23.20 17.80 -57.17 -1.02 -24.21 16 14 O -0.99 -19.24 12.35 -57.17 -0.71 -19.94 16 15 N -1.11 -17.57 5.67 1.19 0.01 -17.56 16 16 C 0.19 2.66 1.59 -131.01 -0.21 2.45 16 17 C -0.14 -1.56 5.42 -90.62 -0.49 -2.05 16 18 C -0.18 -2.03 9.78 -26.73 -0.26 -2.29 16 19 C -0.18 -1.86 9.95 -26.73 -0.27 -2.12 16 20 C -0.15 -1.95 6.85 -25.92 -0.18 -2.12 16 21 C -0.20 -2.87 5.07 -25.92 -0.13 -3.00 16 22 C -0.17 -2.38 6.17 -25.92 -0.16 -2.54 16 23 H 0.06 0.86 4.71 -51.93 -0.24 0.62 16 24 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 25 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 26 H 0.04 0.91 8.06 -51.93 -0.42 0.49 16 27 H 0.03 0.80 7.99 -51.93 -0.41 0.39 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.41 6.02 6.38 -34.47 -0.22 5.80 16 30 H 0.11 1.13 8.13 -51.93 -0.42 0.71 16 31 H 0.10 1.24 6.35 -51.93 -0.33 0.91 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.21 7.18 -51.93 -0.37 0.84 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.14 2.16 1.05 -43.15 -0.05 2.11 16 39 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 40 H 0.10 1.61 4.66 -51.93 -0.24 1.37 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -31.84 313.17 -9.23 -41.07 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.54 Total: 7.14 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.64 Total: -16.80 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.55 Total: -62.72 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.72 Total: -44.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 54.58 SS G_CDS: -0.57 Total: 54.01 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.84 -9.23 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885855827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.852 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds