Wall clock time and date at job start Tue Mar 31 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00234 * 2 1 4 4 C 1.50700 * 109.46751 * 274.99805 * 3 2 1 5 5 H 1.07997 * 120.00438 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00027 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99717 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00183 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46924 * 90.00403 * 8 6 4 10 10 H 1.48501 * 109.47124 * 210.00078 * 8 6 4 11 11 H 1.48500 * 109.47153 * 330.00317 * 8 6 4 12 12 S 1.65609 * 119.99930 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40382 * 135.99312 * 12 2 1 14 14 O 1.42099 * 106.39807 * 3.07131 * 12 2 1 15 15 N 1.65604 * 107.21647 * 249.53387 * 12 2 1 16 16 C 1.46499 * 120.00023 * 60.79056 * 15 12 2 17 17 C 1.53000 * 112.84858 * 184.87695 * 16 15 12 18 18 C 1.53002 * 117.49545 * 18.29523 * 17 16 15 19 19 C 1.53001 * 117.49951 * 309.67316 * 17 16 15 20 20 C 1.53789 * 113.61190 * 53.57495 * 16 15 12 21 21 C 1.53780 * 87.08167 * 270.88241 * 20 16 15 22 22 C 1.53774 * 113.61563 * 316.08020 * 16 15 12 23 23 H 1.09000 * 109.46962 * 273.24025 * 1 2 3 24 24 H 1.09002 * 109.46828 * 33.23501 * 1 2 3 25 25 H 1.08995 * 109.47314 * 153.24011 * 1 2 3 26 26 H 1.08997 * 109.47355 * 34.99658 * 3 2 1 27 27 H 1.09007 * 109.47346 * 155.00211 * 3 2 1 28 28 H 0.97002 * 120.00055 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99505 * 240.78874 * 15 12 2 30 30 H 1.08997 * 115.54933 * 163.99736 * 17 16 15 31 31 H 1.08996 * 117.50056 * 359.97438 * 18 17 16 32 32 H 1.08999 * 117.50028 * 145.02065 * 18 17 16 33 33 H 1.09000 * 117.49481 * 214.97438 * 19 17 16 34 34 H 1.08995 * 117.49976 * 359.97438 * 19 17 16 35 35 H 1.09000 * 113.61295 * 25.43416 * 20 16 15 36 36 H 1.09005 * 113.60950 * 156.33307 * 20 16 15 37 37 H 1.09001 * 113.61526 * 220.02644 * 21 20 16 38 38 H 1.08999 * 113.61467 * 89.11678 * 21 20 16 39 39 H 1.09005 * 113.61323 * 203.66648 * 22 16 15 40 40 H 1.08999 * 113.61393 * 334.47581 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 2.9998 2.9507 -1.6665 7 7 3.5026 3.6473 -0.6707 8 14 3.1777 3.5670 -3.4209 9 1 2.0167 4.4274 -3.7633 10 1 4.4307 4.3543 -3.5444 11 1 3.2268 2.4093 -4.3496 12 16 2.2930 -1.4342 0.0006 13 8 3.3427 -1.2920 -0.9464 14 8 1.3147 -2.4623 -0.0719 15 7 3.0171 -1.5815 1.4827 16 6 2.1987 -1.6209 2.6971 17 6 3.0360 -1.6400 3.9775 18 6 4.4953 -1.1921 3.8739 19 6 4.1615 -2.6723 4.0702 20 6 1.0972 -2.6937 2.6631 21 6 0.1902 -1.6299 2.0224 22 6 1.0708 -0.5758 2.7141 23 1 -0.3633 0.0581 1.0260 24 1 -0.3633 0.8596 -0.5633 25 1 -0.3634 -0.9175 -0.4627 26 1 1.6502 2.0043 0.5894 27 1 3.1859 1.1177 0.4343 28 1 3.9661 4.4809 -0.8472 29 1 3.9831 -1.6417 1.5466 30 1 2.4987 -1.3975 4.8943 31 1 4.8589 -0.8842 2.8935 32 1 4.9183 -0.6547 4.7226 33 1 4.3649 -3.1086 5.0482 34 1 4.3052 -3.3381 3.2193 35 1 1.3230 -3.5305 2.0021 36 1 0.7665 -3.0113 3.6520 37 1 -0.8355 -1.6515 2.3906 38 1 0.2501 -1.6030 0.9344 39 1 0.7328 -0.3144 3.7169 40 1 1.2758 0.2979 2.0955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885855827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:58 Heat of formation + Delta-G solvation = 0.293831 kcal Electronic energy + Delta-G solvation = -23167.363581 eV Core-core repulsion = 19918.861359 eV Total energy + Delta-G solvation = -3248.502222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35399 -38.49439 -37.65353 -36.91773 -36.45158 -34.55508 -33.34379 -29.84123 -27.21845 -26.53980 -26.27214 -24.22128 -23.12922 -21.77065 -21.02548 -20.10263 -19.18136 -18.43112 -18.23916 -17.19875 -16.70098 -16.56630 -16.14318 -15.50369 -15.35932 -15.05213 -14.80017 -14.37483 -14.07579 -13.96525 -13.64033 -13.46787 -13.18248 -13.09215 -12.94804 -12.59307 -12.58398 -12.41709 -12.40693 -12.29700 -12.03610 -11.84427 -11.61129 -11.40376 -11.18917 -11.00565 -10.72434 -10.58140 -10.15464 -9.72508 -8.19870 -6.30575 -0.32167 1.38497 1.40787 1.51603 1.94500 2.40488 2.54708 2.86948 3.10781 3.50634 3.56745 3.67775 3.80510 4.02174 4.05971 4.13391 4.26458 4.32361 4.47988 4.59592 4.79893 4.81528 4.84752 4.91319 5.02072 5.08855 5.09779 5.18762 5.20596 5.26502 5.28925 5.31808 5.41742 5.50885 5.61315 5.70214 5.87407 6.10293 6.15213 6.77754 7.37973 8.87047 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.006275 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.286705 B = 4461.406887 C = 4853.367811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.998 5.998 3 C 0.278 3.722 4 C -0.546 4.546 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.278 1.278 12 S 2.801 3.199 13 O -1.019 7.019 14 O -0.991 6.991 15 N -1.101 6.101 16 C 0.182 3.818 17 C -0.137 4.137 18 C -0.192 4.192 19 C -0.168 4.168 20 C -0.139 4.139 21 C -0.212 4.212 22 C -0.172 4.172 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.014 0.986 28 H 0.267 0.733 29 H 0.416 0.584 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 -10.199 12.426 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.840 5.840 3 C 0.154 3.846 4 C -0.586 4.586 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.203 1.203 12 S 2.809 3.191 13 O -1.003 7.003 14 O -0.974 6.974 15 N -0.862 5.862 16 C 0.093 3.907 17 C -0.157 4.157 18 C -0.229 4.229 19 C -0.205 4.205 20 C -0.178 4.178 21 C -0.249 4.249 22 C -0.210 4.210 23 H 0.105 0.895 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.253 0.747 30 H 0.157 0.843 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.243 -10.654 11.709 16.390 hybrid contribution 0.839 0.878 -0.840 1.477 sum -3.404 -9.776 10.868 15.009 Atomic orbital electron populations 1.22056 0.78283 1.02717 1.03477 1.57417 1.15378 1.21799 1.89365 1.18544 0.90126 0.80361 0.95556 1.21855 1.36031 1.06346 0.94331 0.93193 1.25689 0.94958 0.96799 1.01171 1.70000 1.37990 1.15712 1.32536 0.85629 0.78112 0.78187 0.80227 1.19091 1.20385 1.20273 1.01181 0.72175 0.73033 0.72678 1.93561 1.59051 1.87063 1.60611 1.93468 1.60364 1.56515 1.87068 1.55570 1.18051 1.90213 1.22405 1.20723 0.89189 0.97670 0.83103 1.22366 0.90367 1.05591 0.97328 1.23033 0.98267 0.98467 1.03125 1.23019 1.01889 0.91662 1.03917 1.23492 0.94997 0.96949 1.02379 1.24547 1.00465 0.95834 1.04014 1.24016 0.95354 0.97939 1.03720 0.89524 0.91629 0.90425 0.95040 0.96847 0.92431 0.74696 0.84342 0.90261 0.87216 0.86544 0.89466 0.91768 0.86843 0.88888 0.87070 0.86459 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.64 8.36 127.77 1.07 3.70 16 2 N -1.00 -40.51 1.54 -543.23 -0.84 -41.35 16 3 C 0.28 13.74 4.30 85.63 0.37 14.10 16 4 C -0.55 -30.84 9.38 25.60 0.24 -30.60 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.75 5.46 84.66 0.46 1.21 16 7 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 8 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 S 2.80 111.46 5.35 -56.49 -0.30 111.16 16 13 O -1.02 -50.61 17.80 -128.00 -2.28 -52.89 16 14 O -0.99 -38.33 12.35 -128.00 -1.58 -39.91 16 15 N -1.10 -34.84 5.67 -150.13 -0.85 -35.69 16 16 C 0.18 4.66 1.59 4.13 0.01 4.67 16 17 C -0.14 -2.76 5.42 -10.79 -0.06 -2.82 16 18 C -0.19 -4.06 9.78 30.60 0.30 -3.76 16 19 C -0.17 -3.05 9.95 30.60 0.30 -2.75 16 20 C -0.14 -3.35 6.85 31.12 0.21 -3.14 16 21 C -0.21 -5.47 5.07 31.12 0.16 -5.31 16 22 C -0.17 -4.36 6.17 31.12 0.19 -4.17 16 23 H 0.09 2.39 4.71 -2.39 -0.01 2.38 16 24 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 25 H 0.08 2.42 6.51 -2.39 -0.02 2.40 16 26 H 0.03 1.58 8.06 -2.39 -0.02 1.56 16 27 H 0.01 0.71 7.99 -2.38 -0.02 0.69 16 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.42 12.42 6.38 -96.75 -0.62 11.80 16 30 H 0.14 2.16 8.13 -2.39 -0.02 2.14 16 31 H 0.08 1.99 6.35 -2.39 -0.02 1.97 16 32 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.79 7.18 -2.39 -0.02 1.77 16 36 H 0.11 2.04 8.10 -2.38 -0.02 2.02 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 3.44 1.05 -43.01 -0.05 3.39 16 39 H 0.12 2.31 8.09 -2.38 -0.02 2.29 16 40 H 0.08 2.37 4.66 -2.39 -0.01 2.36 16 Total: -1.00 -68.67 313.17 0.12 -68.55 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.40 Total: 25.27 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.25 Total: -28.85 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -1.40 Total: -130.17 kcal Atomic # 8 Polarization: -88.95 SS G_CDS: -3.86 Total: -92.80 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 111.46 SS G_CDS: -0.30 Total: 111.16 kcal Total: -68.67 0.12 -68.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885855827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.842 kcal (2) G-P(sol) polarization free energy of solvation -68.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds