Wall clock time and date at job start Tue Mar 31 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.39009 * 2 1 4 4 C 1.53019 * 109.43192 * 119.87388 * 2 1 3 5 5 C 1.53364 * 109.75192 * 191.80087 * 4 2 1 6 6 C 1.50951 * 108.20675 * 309.35268 * 5 4 2 7 7 N 1.30121 * 128.28638 * 196.82853 * 6 5 4 8 8 N 1.40319 * 108.12476 * 179.69632 * 7 6 5 9 9 H 0.96992 * 126.00618 * 180.02562 * 8 7 6 10 10 C 1.35198 * 107.98988 * 0.04596 * 8 7 6 11 11 C 1.34573 * 107.61950 * 0.02865 * 10 8 7 12 12 C 1.50883 * 128.32759 * 179.86581 * 11 10 8 13 13 H 1.08995 * 109.71904 * 76.85124 * 12 11 10 14 14 C 1.50700 * 109.72025 * 316.24348 * 12 11 10 15 15 O 1.21290 * 120.00196 * 275.13695 * 14 12 11 16 16 N 1.34777 * 119.99916 * 95.13116 * 14 12 11 17 17 C 1.37093 * 120.00090 * 184.22952 * 16 14 12 18 18 H 1.07998 * 120.00301 * 19.42610 * 17 16 14 19 19 C 1.38956 * 120.00204 * 199.16094 * 17 16 14 20 20 N 1.31409 * 119.99574 * 17.31122 * 19 17 16 21 21 Si 1.86794 * 120.00160 * 197.31790 * 19 17 16 22 22 H 1.48501 * 109.47365 * 89.99466 * 21 19 17 23 23 H 1.48499 * 109.47123 * 209.99868 * 21 19 17 24 24 H 1.48505 * 109.47137 * 329.99235 * 21 19 17 25 25 C 1.46498 * 119.99897 * 4.22418 * 16 14 12 26 26 C 1.47203 * 109.47273 * 83.57786 * 25 16 14 27 27 N 4.75451 * 56.69980 * 228.34157 * 2 1 3 28 28 H 1.09000 * 109.47768 * 179.87298 * 1 2 3 29 29 H 1.09003 * 109.47378 * 299.87781 * 1 2 3 30 30 H 1.09007 * 109.47370 * 59.86966 * 1 2 3 31 31 H 1.08997 * 109.42240 * 71.71163 * 4 2 1 32 32 H 1.09005 * 109.42241 * 311.88924 * 4 2 1 33 33 H 1.08998 * 109.71633 * 189.67360 * 5 4 2 34 34 H 1.09001 * 109.71584 * 69.03134 * 5 4 2 35 35 H 1.07994 * 126.19097 * 180.02562 * 10 8 7 36 36 H 0.97007 * 119.99798 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47247 * 203.57627 * 25 16 14 38 38 H 1.08994 * 109.47360 * 323.57702 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0281 0.0000 4 6 2.0390 -0.7188 1.2513 5 6 3.5439 -0.4721 1.4145 6 6 4.2195 -0.7935 0.1035 7 7 5.4826 -1.0113 -0.1205 8 7 5.6439 -1.2769 -1.4888 9 1 6.4813 -1.4747 -1.9365 10 6 4.4269 -1.2080 -2.0738 11 6 3.5305 -0.9103 -1.1153 12 6 2.0401 -0.7205 -1.2544 13 1 1.5527 -1.6912 -1.3456 14 6 1.7454 0.1130 -2.4748 15 8 1.7753 1.3235 -2.4042 16 7 1.4485 -0.4866 -3.6448 17 6 1.2656 0.2678 -4.7747 18 1 1.6533 1.2748 -4.8203 19 6 0.5863 -0.2649 -5.8635 20 7 -0.1665 -1.3311 -5.7105 21 14 0.7432 0.5343 -7.5445 22 1 1.8847 -0.0715 -8.2761 23 1 -0.5084 0.3186 -8.3140 24 1 0.9780 1.9914 -7.3799 25 6 1.3214 -1.9447 -3.7090 26 6 -0.0342 -2.3379 -3.2913 27 7 -1.0804 -2.6414 -2.9689 28 1 -0.3634 -1.0276 -0.0023 29 1 -0.3634 0.5119 0.8911 30 1 -0.3634 0.5159 -0.8888 31 1 1.8554 -1.7888 1.1546 32 1 1.5123 -0.3392 2.1269 33 1 3.9391 -1.1167 2.1996 34 1 3.7195 0.5723 1.6724 35 1 4.2130 -1.3638 -3.1208 36 1 -0.6404 -1.7033 -6.4707 37 1 1.4983 -2.2801 -4.7309 38 1 2.0536 -2.4029 -3.0443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900463953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:21 Heat of formation + Delta-G solvation = 48.096216 kcal Electronic energy + Delta-G solvation = -23678.428227 eV Core-core repulsion = 20328.847672 eV Total energy + Delta-G solvation = -3349.580555 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.54621 -40.59747 -38.04583 -37.30530 -36.08309 -33.93073 -33.27682 -31.94841 -30.52081 -29.19662 -27.85613 -26.35678 -24.80562 -22.74288 -21.68168 -20.58801 -19.76621 -19.59701 -18.65409 -18.20990 -17.77047 -16.63598 -16.05141 -15.90287 -15.54916 -15.38490 -14.97374 -14.81228 -14.68793 -14.42283 -14.07354 -13.70209 -13.63806 -13.45052 -13.22194 -13.03918 -12.91478 -12.84677 -12.40738 -12.29586 -12.18628 -12.12289 -11.99852 -11.67593 -11.43965 -11.35015 -11.07116 -10.38069 -10.25809 -9.87828 -9.31401 -8.35174 -5.94818 0.98525 1.41051 1.48842 1.58158 1.73764 1.85069 2.01825 2.14340 2.31042 2.37993 3.04762 3.17066 3.50234 3.59667 3.84062 3.91901 3.99699 4.22741 4.33986 4.42002 4.49659 4.57736 4.62634 4.68387 4.73508 4.93001 4.94572 4.96467 5.05102 5.14141 5.18039 5.33906 5.38601 5.50905 5.57528 5.71020 6.09129 6.45387 6.49771 6.77606 7.02822 7.17088 7.39510 7.99011 8.67743 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.006282 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.588759 B = 4456.029219 C = 5055.025052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 H 0.062 0.938 4 C -0.100 4.100 5 C -0.037 4.037 6 C 0.082 3.918 7 N -0.312 5.312 8 N -0.473 5.473 9 H 0.453 0.547 10 C 0.074 3.926 11 C -0.242 4.242 12 C -0.012 4.012 13 H 0.089 0.911 14 C 0.470 3.530 15 O -0.611 6.611 16 N -0.455 5.455 17 C -0.333 4.333 18 H 0.080 0.920 19 C 0.006 3.994 20 N -0.897 5.897 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.288 1.288 24 H -0.280 1.280 25 C 0.223 3.777 26 C 0.256 3.744 27 N -0.503 5.503 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.016 0.984 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.191 0.809 36 H 0.273 0.727 37 H 0.129 0.871 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -4.696 8.349 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.086 4.086 7 N -0.135 5.135 8 N -0.183 5.183 9 H 0.300 0.700 10 C -0.073 4.073 11 C -0.254 4.254 12 C -0.034 4.034 13 H 0.107 0.893 14 C 0.260 3.740 15 O -0.496 6.496 16 N -0.175 5.175 17 C -0.461 4.461 18 H 0.098 0.902 19 C -0.196 4.196 20 N -0.536 5.536 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.214 1.214 24 H -0.206 1.206 25 C 0.096 3.904 26 C -0.062 4.062 27 N -0.184 5.184 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.208 0.792 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.247 -4.737 9.208 13.883 hybrid contribution -0.457 0.675 -2.317 2.457 sum 8.790 -4.062 6.890 11.884 Atomic orbital electron populations 1.21757 0.95365 1.01413 1.01131 1.20998 0.95104 0.99572 0.93459 0.91921 1.21600 0.94157 1.01174 0.96817 1.20259 0.93867 1.03046 0.90409 1.22713 0.90388 0.98079 0.97443 1.76877 1.18185 1.24448 0.94019 1.46241 1.08852 1.57460 1.05697 0.70037 1.22389 0.85490 0.99540 0.99847 1.19717 0.95201 1.16505 0.93939 1.19658 0.92094 0.98450 0.93223 0.89266 1.20796 0.80835 0.88258 0.84133 1.90495 1.57664 1.16622 1.84796 1.43768 1.61546 1.04664 1.07491 1.19608 1.35714 0.99728 0.91011 0.90168 1.25836 0.93729 0.97340 1.02696 1.69895 1.27180 1.24125 1.32385 0.85051 0.77836 0.78285 0.77902 1.18279 1.21417 1.20561 1.19035 0.84734 0.81857 1.04777 1.29746 0.95670 0.91424 0.89363 1.80885 1.12390 1.10757 1.14350 0.92665 0.90233 0.96449 0.90725 0.88231 0.87742 0.89361 0.79218 0.91653 0.85306 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.01 71.98 0.65 -3.87 16 2 C -0.07 -2.26 1.93 -10.66 -0.02 -2.28 16 3 H 0.06 2.26 7.48 -2.39 -0.02 2.24 16 4 C -0.10 -2.19 5.17 30.72 0.16 -2.03 16 5 C -0.04 -0.81 6.31 30.05 0.19 -0.62 16 6 C 0.08 2.33 7.10 43.44 0.31 2.64 16 7 N -0.31 -8.83 12.68 -47.14 -0.60 -9.43 16 8 N -0.47 -11.29 7.37 -57.89 -0.43 -11.72 16 9 H 0.45 7.37 8.96 -213.19 -1.91 5.46 16 10 C 0.07 2.02 11.19 83.33 0.93 2.95 16 11 C -0.24 -7.46 5.37 -20.10 -0.11 -7.56 16 12 C -0.01 -0.40 1.54 -12.10 -0.02 -0.42 16 13 H 0.09 2.91 5.76 -2.39 -0.01 2.89 16 14 C 0.47 20.84 5.47 87.66 0.48 21.32 16 15 O -0.61 -32.55 15.76 -3.06 -0.05 -32.60 16 16 N -0.45 -20.38 2.60 -645.43 -1.68 -22.06 16 17 C -0.33 -16.84 9.30 84.04 0.78 -16.06 16 18 H 0.08 4.41 7.42 -2.91 -0.02 4.39 16 19 C 0.01 0.27 4.96 84.93 0.42 0.69 16 20 N -0.90 -43.74 9.32 21.66 0.20 -43.54 16 21 Si 0.98 39.46 29.59 68.60 2.03 41.49 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.22 8.34 4.77 84.57 0.40 8.74 16 26 C 0.26 10.92 12.90 89.44 1.15 12.07 16 27 N -0.50 -23.26 18.54 20.01 0.37 -22.89 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.02 0.68 7.56 -2.38 -0.02 0.66 16 31 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 32 H 0.10 1.69 8.09 -2.38 -0.02 1.67 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.19 4.58 8.05 -2.91 -0.02 4.56 16 36 H 0.27 12.95 8.31 -92.70 -0.77 12.18 16 37 H 0.13 4.90 6.39 -2.39 -0.02 4.88 16 38 H 0.12 3.51 6.27 -2.39 -0.01 3.49 16 Total: -1.00 -68.97 317.17 4.38 -64.59 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.80 Total: 20.58 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 5.33 Total: 15.58 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -2.13 Total: -109.64 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.60 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -68.97 4.38 -64.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900463953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.685 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds