Wall clock time and date at job start Tue Mar 31 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53005 * 117.49874 * 214.32964 * 2 1 3 5 5 C 1.52999 * 59.99973 * 252.48565 * 4 2 1 6 6 H 1.08995 * 117.49529 * 107.48826 * 5 4 2 7 7 C 1.52995 * 117.50039 * 252.50950 * 5 4 2 8 8 H 1.08998 * 115.55009 * 342.90300 * 7 5 4 9 9 C 1.52996 * 117.50168 * 197.23159 * 7 5 4 10 10 C 1.52992 * 60.00316 * 252.51057 * 9 7 5 11 11 H 1.09000 * 117.50430 * 107.48650 * 10 9 7 12 12 N 1.46506 * 117.50048 * 252.50944 * 10 9 7 13 13 S 1.65596 * 119.99968 * 213.61943 * 12 10 9 14 14 O 1.42106 * 106.40000 * 178.53923 * 13 12 10 15 15 O 1.42103 * 106.40467 * 311.45817 * 13 12 10 16 16 N 1.65596 * 107.21878 * 65.00262 * 13 12 10 17 17 C 1.46501 * 119.99789 * 269.99791 * 16 13 12 18 18 C 1.46498 * 120.00228 * 89.99443 * 16 13 12 19 19 C 1.50705 * 109.47034 * 95.00223 * 18 16 13 20 20 H 1.08006 * 119.99600 * 0.02562 * 19 18 16 21 21 C 1.37870 * 120.00381 * 179.97438 * 19 18 16 22 22 N 1.31519 * 119.99714 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00281 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47261 * 60.00134 * 23 21 19 25 25 H 1.48507 * 109.47325 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47214 * 299.99671 * 23 21 19 27 27 H 1.09004 * 109.46919 * 154.42192 * 1 2 3 28 28 H 1.09001 * 109.47034 * 274.41599 * 1 2 3 29 29 H 1.08995 * 109.47274 * 34.41368 * 1 2 3 30 30 H 1.09004 * 117.49602 * 359.97438 * 4 2 1 31 31 H 1.09004 * 117.49357 * 144.97247 * 4 2 1 32 32 H 1.09001 * 117.49769 * 359.97438 * 9 7 5 33 33 H 1.09000 * 117.50016 * 145.01891 * 9 7 5 34 34 H 0.96995 * 119.99710 * 33.62259 * 12 10 9 35 35 H 1.08997 * 109.47340 * 89.99789 * 17 16 13 36 36 H 1.09003 * 109.47202 * 209.99852 * 17 16 13 37 37 H 1.09000 * 109.46976 * 329.99801 * 17 16 13 38 38 H 1.09000 * 109.47305 * 215.00226 * 18 16 13 39 39 H 1.09000 * 109.47259 * 335.00388 * 18 16 13 40 40 H 0.96997 * 120.00216 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1208 -0.7654 5 6 2.2370 -1.1210 0.7646 6 1 1.6120 -1.8586 1.2679 7 6 3.5496 -0.7757 1.4707 8 1 4.4460 -0.8387 0.8538 9 6 3.6796 -1.1575 2.9465 10 6 3.5080 0.3096 2.5483 11 1 2.5454 0.7778 2.7541 12 7 4.6760 1.1853 2.6720 13 16 4.4777 2.7770 3.0833 14 8 5.7812 3.3386 3.1540 15 8 3.4569 3.2863 2.2360 16 7 3.8689 2.8133 4.6229 17 6 2.4198 2.8027 4.8379 18 6 4.7793 2.8557 5.7699 19 6 4.9783 4.2862 6.2005 20 1 4.4764 5.0838 5.6728 21 6 5.8002 4.5766 7.2686 22 7 6.4110 3.6053 7.9115 23 14 6.0475 6.3496 7.8019 24 1 4.7392 6.9382 8.1856 25 1 6.9703 6.3928 8.9647 26 1 6.6301 7.1276 6.6792 27 1 -0.3633 -0.9270 -0.4437 28 1 -0.3633 0.0791 1.0246 29 1 -0.3633 0.8478 -0.5808 30 1 1.6112 -1.8583 -1.2686 31 1 3.1712 -0.8745 -1.2693 32 1 2.8297 -1.6543 3.4146 33 1 4.6615 -1.4714 3.3006 34 1 5.5655 0.8327 2.5128 35 1 2.0721 1.7730 4.9200 36 1 2.1849 3.3399 5.7569 37 1 1.9241 3.2876 3.9969 38 1 4.3524 2.2842 6.5940 39 1 5.7397 2.4243 5.4876 40 1 6.9889 3.8095 8.6633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921310428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:30 Heat of formation + Delta-G solvation = -33.275926 kcal Electronic energy + Delta-G solvation = -21530.923208 eV Core-core repulsion = 18280.965293 eV Total energy + Delta-G solvation = -3249.957916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.06080 -36.65145 -36.32565 -35.47668 -35.16259 -32.42909 -31.91842 -28.64136 -27.77219 -25.06076 -23.58226 -22.30082 -22.13644 -21.04060 -20.04218 -18.97094 -17.34342 -16.68796 -16.42762 -16.20324 -15.47095 -15.12261 -14.52746 -14.28264 -13.60374 -13.44805 -13.28153 -13.20334 -12.79225 -12.41760 -12.21454 -12.15513 -11.97825 -11.69377 -11.61095 -11.53389 -11.42787 -11.33170 -11.15831 -11.05222 -10.71628 -10.64001 -10.48387 -10.29151 -10.01586 -9.77299 -9.66224 -8.78440 -8.43475 -8.06101 -6.05776 -4.09922 1.21234 3.34313 3.37807 3.40854 3.43292 3.47586 3.89959 4.13210 4.44639 4.47731 4.61221 4.74191 4.85652 4.97435 5.06606 5.14126 5.20839 5.29369 5.30264 5.39685 5.63018 5.63598 5.66478 5.67046 5.76545 5.95085 5.99136 6.02884 6.08785 6.20976 6.26597 6.37491 6.56343 7.07659 7.26383 7.42498 7.61757 7.91622 8.21014 8.92238 9.55254 11.02816 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.004076 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.455411 B = 6868.326453 C = 7018.484690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.121 4.121 6 H 0.106 0.894 7 C -0.134 4.134 8 H 0.107 0.893 9 C -0.181 4.181 10 C 0.104 3.896 11 H 0.133 0.867 12 N -1.105 6.105 13 S 2.783 3.217 14 O -0.963 6.963 15 O -0.995 6.995 16 N -0.994 5.994 17 C 0.093 3.907 18 C 0.258 3.742 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.412 0.588 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 -11.755 -12.316 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 H 0.129 0.871 4 C -0.210 4.210 5 C -0.139 4.139 6 H 0.124 0.876 7 C -0.155 4.155 8 H 0.125 0.875 9 C -0.220 4.220 10 C -0.005 4.005 11 H 0.150 0.850 12 N -0.859 5.859 13 S 2.790 3.210 14 O -0.947 6.947 15 O -0.979 6.979 16 N -0.837 5.837 17 C -0.053 4.053 18 C 0.136 3.864 19 C -0.570 4.570 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.535 5.535 23 Si 0.725 3.275 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.245 0.755 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.332 -10.922 -12.658 19.147 hybrid contribution 0.629 0.350 0.617 0.948 sum -8.703 -10.572 -12.041 18.234 Atomic orbital electron populations 1.21367 0.92906 1.01678 1.01996 1.22489 0.95156 0.95223 1.04124 0.87144 1.23136 1.02654 1.01600 0.93652 1.21833 0.96959 1.01754 0.93358 0.87562 1.22284 0.97713 1.04142 0.91373 0.87454 1.23522 1.03804 0.98225 0.96446 1.21317 0.89700 0.86869 1.02627 0.84974 1.55943 1.13291 1.30773 1.85856 1.01940 0.73342 0.72634 0.73065 1.93651 1.39507 1.74820 1.86720 1.93529 1.60312 1.77847 1.66162 1.57572 1.13414 1.88361 1.24332 1.21380 0.80360 1.00224 1.03366 1.19041 0.87261 0.97566 0.82526 1.21470 1.28133 0.92789 1.14577 0.92210 1.24930 0.95260 0.97638 0.96178 1.69911 1.30443 1.31698 1.21484 0.86570 0.78086 0.84781 0.78094 1.20158 1.21169 1.19985 0.92834 0.92084 0.92080 0.88955 0.88917 0.88028 0.88183 0.75511 0.94301 0.90327 0.91567 0.94681 0.94493 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.19 37.16 0.38 -0.66 16 2 C -0.15 -1.52 6.05 -90.62 -0.55 -2.07 16 3 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.17 -1.53 9.90 -26.73 -0.26 -1.80 16 5 C -0.12 -1.14 5.59 -90.62 -0.51 -1.65 16 6 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 7 C -0.13 -1.41 5.79 -90.62 -0.53 -1.94 16 8 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 9 C -0.18 -1.87 10.18 -26.74 -0.27 -2.14 16 10 C 0.10 1.31 6.14 -67.93 -0.42 0.90 16 11 H 0.13 1.66 8.11 -51.93 -0.42 1.24 16 12 N -1.10 -16.44 6.10 -4.89 -0.03 -16.47 16 13 S 2.78 54.90 6.08 -107.50 -0.65 54.24 16 14 O -0.96 -23.11 17.11 -57.17 -0.98 -24.08 16 15 O -1.00 -20.49 16.50 -57.17 -0.94 -21.43 16 16 N -0.99 -20.47 3.23 -123.05 -0.40 -20.87 16 17 C 0.09 1.58 10.68 59.85 0.64 2.22 16 18 C 0.26 6.47 5.08 -5.19 -0.03 6.44 16 19 C -0.53 -14.97 9.38 -34.44 -0.32 -15.29 16 20 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 23 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.41 5.42 8.96 -34.47 -0.31 5.12 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 37 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 38 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 39 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -33.29 350.81 -10.47 -43.76 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.51 Total: 2.47 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.96 Total: -14.32 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.31 Total: -62.82 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.92 Total: -45.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 54.90 SS G_CDS: -0.65 Total: 54.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.29 -10.47 -43.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921310428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.488 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds