Wall clock time and date at job start Tue Mar 31 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38564 * 119.96553 * 2 1 4 4 C 1.38823 * 118.07196 * 179.97438 * 3 2 1 5 5 C 1.39721 * 117.89469 * 0.02562 * 4 3 2 6 6 C 1.48154 * 120.18472 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99637 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00456 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00219 * 179.97438 * 8 6 5 10 10 H 1.09000 * 115.51891 * 350.58802 * 9 8 6 11 11 C 1.53002 * 117.44489 * 205.16536 * 9 8 6 12 12 H 1.09002 * 119.53586 * 4.16528 * 11 9 8 13 13 C 1.54387 * 118.12562 * 159.26136 * 11 9 8 14 14 N 1.48145 * 104.62096 * 87.18964 * 13 11 9 15 15 C 1.36932 * 127.83763 * 140.41564 * 14 13 11 16 16 H 1.07999 * 119.99707 * 195.57267 * 15 14 13 17 17 C 1.38813 * 120.00089 * 15.57752 * 15 14 13 18 18 N 1.31616 * 120.00060 * 9.09550 * 17 15 14 19 19 Si 1.86796 * 119.99895 * 189.09800 * 17 15 14 20 20 H 1.48499 * 109.47363 * 89.99877 * 19 17 15 21 21 H 1.48497 * 109.47090 * 209.99628 * 19 17 15 22 22 H 1.48501 * 109.47423 * 329.99637 * 19 17 15 23 23 C 1.48154 * 104.32292 * 320.41825 * 14 13 11 24 24 C 1.53000 * 117.40418 * 135.93783 * 9 8 6 25 25 H 1.09001 * 119.54297 * 355.90095 * 24 9 8 26 26 N 1.32781 * 119.63603 * 0.26773 * 5 4 3 27 27 N 1.28356 * 122.02577 * 359.45365 * 26 5 4 28 28 H 1.09003 * 109.47173 * 90.00004 * 1 2 3 29 29 H 1.09002 * 109.47322 * 209.99702 * 1 2 3 30 30 H 1.09004 * 109.47229 * 329.99600 * 1 2 3 31 31 H 1.08001 * 120.96625 * 0.02603 * 3 2 1 32 32 H 1.07996 * 121.05695 * 179.97438 * 4 3 2 33 33 H 0.97005 * 119.99808 * 359.97438 * 8 6 5 34 34 H 1.08994 * 110.40616 * 205.97672 * 13 11 9 35 35 H 1.09007 * 110.40129 * 328.28727 * 13 11 9 36 36 H 0.97000 * 119.99800 * 180.02562 * 18 17 15 37 37 H 1.08994 * 110.40760 * 158.37153 * 23 14 13 38 38 H 1.09005 * 110.39957 * 280.80159 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2004 0.0000 4 6 3.5866 1.1545 0.0005 5 6 4.1991 -0.1012 0.0005 6 6 5.6767 -0.2093 0.0017 7 8 6.3594 0.7960 0.0022 8 7 6.2637 -1.4225 0.0021 9 6 7.7248 -1.5293 0.0027 10 1 8.2639 -0.5957 -0.1582 11 6 8.3387 -2.8065 -0.5742 12 1 7.6906 -3.5582 -1.0248 13 6 9.8115 -2.7623 -1.0351 14 7 10.5942 -3.0734 0.1836 15 6 11.7170 -3.8506 0.2851 16 1 12.0452 -4.2015 1.2523 17 6 12.4333 -4.1875 -0.8552 18 7 12.1435 -3.6192 -2.0064 19 14 13.8087 -5.4476 -0.7558 20 1 13.2565 -6.8037 -1.0033 21 1 14.8386 -5.1381 -1.7798 22 1 14.4245 -5.4028 0.5948 23 6 9.8866 -2.3528 1.2676 24 6 8.3556 -2.5539 0.9478 25 1 7.7202 -3.1175 1.6310 26 7 3.4496 -1.1973 -0.0054 27 7 2.1672 -1.1450 -0.0008 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6744 2.1444 0.0004 32 1 4.1740 2.0608 0.0002 33 1 5.7187 -2.2250 0.0021 34 1 9.9916 -3.5130 -1.8045 35 1 10.0634 -1.7693 -1.4076 36 1 12.6438 -3.8549 -2.8032 37 1 10.1235 -2.7946 2.2354 38 1 10.1509 -1.2954 1.2565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959844267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:51 Heat of formation + Delta-G solvation = 62.807385 kcal Electronic energy + Delta-G solvation = -21518.569564 eV Core-core repulsion = 18169.626933 eV Total energy + Delta-G solvation = -3348.942631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34032 -40.97479 -39.71398 -36.21053 -35.20629 -34.27653 -34.14542 -32.15689 -29.52502 -28.81609 -27.61193 -26.26661 -24.65234 -23.48813 -22.15433 -22.02464 -20.94227 -19.45470 -18.86037 -18.55006 -17.47986 -16.77876 -16.72001 -16.65227 -16.16870 -15.65286 -15.54040 -15.01906 -14.80131 -14.63298 -14.23712 -13.82519 -13.76042 -13.35256 -13.24828 -13.20382 -12.91024 -12.71632 -12.61336 -12.14852 -12.00677 -11.91697 -11.71882 -11.38542 -11.37443 -10.89517 -10.86734 -10.84967 -10.72569 -9.82387 -8.94016 -7.92447 -5.29528 -0.68670 -0.30946 1.40784 1.47011 1.49169 1.58175 1.67443 2.45209 2.48053 2.65639 2.82840 3.24537 3.29721 3.46800 3.57644 3.66618 3.77876 3.81465 3.90346 3.97868 4.04861 4.26138 4.47208 4.55488 4.63580 4.76058 4.78674 4.85122 4.95251 4.96873 5.01898 5.23786 5.30933 5.33656 5.42350 5.48560 5.63010 6.15341 6.25074 6.87423 6.99186 7.43391 7.66057 8.44467 9.21627 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.047532 B = 0.002707 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.931883 B =10340.943500 C =10498.288495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.082 3.918 3 C -0.102 4.102 4 C -0.069 4.069 5 C 0.002 3.998 6 C 0.579 3.421 7 O -0.558 6.558 8 N -0.667 5.667 9 C 0.110 3.890 10 H 0.117 0.883 11 C -0.180 4.180 12 H 0.122 0.878 13 C 0.190 3.810 14 N -0.616 5.616 15 C -0.241 4.241 16 H 0.084 0.916 17 C -0.064 4.064 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.266 1.266 23 C 0.151 3.849 24 C -0.164 4.164 25 H 0.138 0.862 26 N -0.228 5.228 27 N -0.273 5.273 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.206 0.794 32 H 0.174 0.826 33 H 0.420 0.580 34 H 0.059 0.941 35 H 0.001 0.999 36 H 0.250 0.750 37 H 0.064 0.936 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.015 9.757 4.827 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.060 4.060 3 C -0.130 4.130 4 C -0.097 4.097 5 C -0.145 4.145 6 C 0.363 3.637 7 O -0.435 6.435 8 N -0.315 5.315 9 C 0.004 3.996 10 H 0.134 0.866 11 C -0.201 4.201 12 H 0.139 0.861 13 C 0.064 3.936 14 N -0.340 5.340 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.257 4.257 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.191 1.191 23 C 0.025 3.975 24 C -0.185 4.185 25 H 0.155 0.845 26 N -0.074 5.074 27 N -0.118 5.118 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.223 0.777 32 H 0.191 0.809 33 H 0.257 0.743 34 H 0.078 0.922 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -25.340 8.702 4.712 27.204 hybrid contribution 1.031 0.402 -0.382 1.171 sum -24.309 9.104 4.330 26.316 Atomic orbital electron populations 1.20932 0.84030 1.05815 1.05220 1.23814 1.01277 0.90016 0.90931 1.22836 0.92964 1.01669 0.95551 1.22706 0.96525 0.98359 0.92121 1.22571 0.94730 0.93604 1.03550 1.17867 0.86223 0.83438 0.76139 1.90789 1.64487 1.36821 1.51379 1.45111 1.05935 1.08741 1.71748 1.21575 0.79800 0.95132 1.03122 0.86558 1.24336 0.98409 0.99370 0.97947 0.86050 1.20797 0.85356 0.97265 0.90175 1.45410 1.28672 1.55741 1.04191 1.19402 1.00535 1.22667 0.94315 0.89834 1.25784 1.01552 1.02572 0.95803 1.70095 1.44226 1.45515 0.99760 0.85014 0.78088 0.78346 0.77475 1.21100 1.22123 1.19088 1.21834 0.88479 0.94771 0.92425 1.25038 0.97213 1.02785 0.93451 0.84460 1.73132 1.00665 1.26675 1.06908 1.73038 1.00353 1.26727 1.11664 0.87986 0.89985 0.86790 0.77701 0.80854 0.74268 0.92216 0.98154 0.94054 0.91783 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 71.24 0.73 0.24 16 2 C 0.08 1.10 6.87 42.59 0.29 1.39 16 3 C -0.10 -1.02 9.86 22.49 0.22 -0.80 16 4 C -0.07 -1.16 9.73 22.77 0.22 -0.94 16 5 C 0.00 0.05 6.83 41.99 0.29 0.34 16 6 C 0.58 17.26 7.82 86.88 0.68 17.94 16 7 O -0.56 -19.66 15.96 -3.77 -0.06 -19.72 16 8 N -0.67 -19.54 5.55 -445.12 -2.47 -22.01 16 9 C 0.11 3.81 5.92 44.99 0.27 4.08 16 10 H 0.12 4.54 7.40 -2.39 -0.02 4.52 16 11 C -0.18 -6.94 6.98 -9.89 -0.07 -7.01 16 12 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 13 C 0.19 9.61 5.70 86.53 0.49 10.10 16 14 N -0.62 -32.48 3.38 -681.41 -2.30 -34.78 16 15 C -0.24 -13.63 10.35 84.03 0.87 -12.76 16 16 H 0.08 4.50 7.84 -2.91 -0.02 4.47 16 17 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 18 N -0.95 -57.76 10.86 21.65 0.24 -57.52 16 19 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.15 6.42 7.10 87.72 0.62 7.04 16 24 C -0.16 -5.78 7.34 -8.69 -0.06 -5.85 16 25 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 26 N -0.23 -5.72 10.75 -48.49 -0.52 -6.24 16 27 N -0.27 -5.96 11.43 -47.54 -0.54 -6.51 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 -0.14 8.09 -2.38 -0.02 -0.15 16 31 H 0.21 0.03 8.06 -2.91 -0.02 0.01 16 32 H 0.17 2.53 7.72 -2.91 -0.02 2.51 16 33 H 0.42 10.86 8.18 -92.70 -0.76 10.10 16 34 H 0.06 3.38 6.51 -2.39 -0.02 3.36 16 35 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 36 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -74.84 328.01 1.70 -73.14 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.33 Total: 15.16 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.01 Total: 10.59 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.60 Total: -127.06 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.72 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.84 1.70 -73.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959844267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.948 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds