Wall clock time and date at job start Tue Mar 31 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47334 * 2 1 4 4 N 1.46497 * 109.47309 * 239.99602 * 2 1 3 5 5 C 1.34776 * 119.99630 * 85.00100 * 4 2 1 6 6 O 1.21644 * 120.00287 * 0.02562 * 5 4 2 7 7 C 1.47059 * 119.99707 * 180.02562 * 5 4 2 8 8 C 1.38006 * 125.91735 * 179.69157 * 7 5 4 9 9 C 1.39362 * 107.48526 * 179.88108 * 8 7 5 10 10 C 1.38079 * 107.51313 * 0.38286 * 9 8 7 11 11 C 1.43194 * 125.89478 * 179.76846 * 10 9 8 12 12 N 7.84884 * 109.95960 * 231.64894 * 2 1 3 13 13 N 1.36724 * 108.20941 * 359.76121 * 10 9 8 14 14 H 0.97000 * 125.68424 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.46691 * 119.99653 * 2 1 3 16 16 C 1.53943 * 113.74673 * 281.82161 * 15 2 1 17 17 N 1.47815 * 86.03777 * 222.08643 * 16 15 2 18 18 C 1.36929 * 134.45498 * 204.64052 * 17 16 15 19 19 H 1.08008 * 120.00026 * 179.86978 * 18 17 16 20 20 C 1.38817 * 120.00176 * 359.86967 * 18 17 16 21 21 N 1.31611 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00016 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47036 * 90.00200 * 22 20 18 24 24 H 1.48498 * 109.46900 * 209.99879 * 22 20 18 25 25 H 1.48506 * 109.47066 * 330.00009 * 22 20 18 26 26 C 1.47584 * 91.05097 * 24.55008 * 17 16 15 27 27 H 1.09003 * 109.47381 * 300.07557 * 1 2 3 28 28 H 1.09000 * 109.46959 * 60.07874 * 1 2 3 29 29 H 1.08996 * 109.47385 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00146 * 265.00558 * 4 2 1 31 31 H 1.07995 * 126.25865 * 359.97438 * 8 7 5 32 32 H 1.07999 * 126.24306 * 180.12943 * 9 8 7 33 33 H 1.09000 * 112.94713 * 53.41815 * 15 2 1 34 34 H 1.09003 * 113.76499 * 336.35102 * 16 15 2 35 35 H 1.08998 * 113.76796 * 107.74658 * 16 15 2 36 36 H 0.97005 * 120.00065 * 180.02562 * 21 20 18 37 37 H 1.08999 * 113.76670 * 221.15110 * 26 17 16 38 38 H 1.08994 * 113.87033 * 89.76641 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3570 6 8 1.8582 1.1621 -2.4116 7 6 2.6368 -0.7118 -3.5579 8 6 2.8091 -0.1469 -4.8052 9 6 3.2903 -1.1429 -5.6530 10 6 3.3964 -2.3034 -4.9124 11 6 3.8483 -3.5718 -5.3996 12 7 4.2093 -4.5775 -5.7855 13 7 2.9955 -2.0325 -3.6337 14 1 2.9689 -2.6689 -2.9022 15 6 2.0399 -0.7212 1.2493 16 6 1.9743 0.1330 2.5284 17 7 3.3097 -0.4179 2.8417 18 6 4.0192 -0.6143 3.9963 19 1 5.0065 -1.0504 3.9558 20 6 3.4696 -0.2531 5.2188 21 7 2.2667 0.2788 5.2680 22 14 4.4373 -0.5218 6.7938 23 1 5.2532 0.6842 7.0854 24 1 3.4969 -0.7665 7.9168 25 1 5.3309 -1.6967 6.6314 26 6 3.5701 -0.6730 1.4116 27 1 -0.3634 0.5150 0.8893 28 1 -0.3633 0.5126 -0.8907 29 1 -0.3634 -1.0276 0.0005 30 1 2.2490 -1.6318 -1.1525 31 1 2.6092 0.8796 -5.0747 32 1 3.5319 -1.0288 -6.6994 33 1 1.6175 -1.7192 1.3660 34 1 1.9751 1.2066 2.3401 35 1 1.1952 -0.1776 3.2245 36 1 1.8828 0.5316 6.1222 37 1 4.0627 -1.6258 1.2179 38 1 4.0407 0.1623 0.8932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969515271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:44 Heat of formation + Delta-G solvation = 92.665500 kcal Electronic energy + Delta-G solvation = -21692.629788 eV Core-core repulsion = 18344.981902 eV Total energy + Delta-G solvation = -3347.647886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79550 -39.60676 -38.04690 -36.85024 -35.01432 -32.37921 -31.73301 -30.99300 -29.66670 -27.54446 -25.14232 -24.47564 -23.71246 -21.92342 -21.03394 -20.54772 -20.17527 -19.02471 -17.54598 -16.86644 -16.11405 -15.62489 -15.07103 -14.84690 -14.75504 -14.45719 -14.06624 -13.93852 -13.66995 -13.51650 -13.39159 -13.16009 -13.08183 -12.61072 -12.37994 -12.14388 -11.69498 -11.47632 -11.30238 -10.94301 -10.74732 -10.43752 -10.35061 -9.89764 -9.83880 -9.58017 -9.50636 -9.10454 -8.84138 -8.67541 -6.93070 -5.81511 -3.13835 0.61615 1.80861 1.84416 2.65604 2.98524 3.02003 3.15678 3.36195 3.41048 3.42966 3.54964 4.40635 4.51005 4.73631 4.84290 5.03731 5.08660 5.30900 5.46600 5.47455 5.54849 5.67367 5.72509 5.87798 5.96261 6.07615 6.18104 6.26564 6.30751 6.35460 6.44570 6.54650 6.62817 6.69787 6.97924 7.16383 7.29014 7.38332 7.50703 7.93338 8.03151 9.00022 9.66329 10.54455 11.35693 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.003187 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.771295 B = 8784.720611 C = 9579.816193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.092 0.908 4 N -0.716 5.716 5 C 0.583 3.417 6 O -0.519 6.519 7 C 0.005 3.995 8 C -0.118 4.118 9 C -0.123 4.123 10 C 0.084 3.916 11 C 0.276 3.724 12 N -0.398 5.398 13 N -0.514 5.514 14 H 0.424 0.576 15 C -0.149 4.149 16 C 0.176 3.824 17 N -0.612 5.612 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.124 3.876 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.392 0.608 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.039 0.961 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -3.262 -19.367 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.110 0.890 4 N -0.366 5.366 5 C 0.368 3.632 6 O -0.394 6.394 7 C -0.114 4.114 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.033 4.033 11 C -0.040 4.040 12 N -0.075 5.075 13 N -0.111 5.111 14 H 0.263 0.737 15 C -0.169 4.169 16 C 0.050 3.950 17 N -0.338 5.338 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.002 4.002 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.040 -4.040 -19.434 19.954 hybrid contribution 0.582 -0.501 1.455 1.645 sum -1.458 -4.541 -17.979 18.601 Atomic orbital electron populations 1.22119 0.95093 1.01904 1.02584 1.21211 0.94012 0.97602 0.82504 0.88963 1.46095 1.66807 1.13654 1.10004 1.17082 0.78135 0.86395 0.81557 1.90866 1.50051 1.14428 1.84083 1.20857 1.09923 0.83201 0.97390 1.21294 1.02456 1.00439 0.90133 1.21276 1.03833 0.89901 1.00161 1.15568 1.12400 0.89533 0.85827 1.24336 0.93475 0.91313 0.94880 1.81346 1.09720 1.09795 1.06648 1.41911 1.49512 1.10116 1.09594 0.73737 1.23893 0.97611 1.00818 0.94555 1.22231 0.89660 0.93923 0.89142 1.45977 1.16327 1.71886 0.99583 1.19018 0.98486 1.34991 0.82797 0.90315 1.24780 0.97048 1.01022 0.97512 1.69798 1.15330 1.47162 1.24487 0.86128 0.78792 0.77819 0.83062 1.21568 1.21581 1.20641 1.22543 0.92948 0.97656 0.87032 0.90815 0.92590 0.92753 0.77442 0.82079 0.82459 0.89322 0.95272 0.90627 0.93569 0.94303 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.44 37.16 0.35 -1.63 16 2 C 0.15 2.06 2.29 -67.93 -0.16 1.91 16 3 H 0.09 1.48 7.48 -51.93 -0.39 1.09 16 4 N -0.72 -7.77 4.94 -55.00 -0.27 -8.04 16 5 C 0.58 6.89 7.77 -12.68 -0.10 6.79 16 6 O -0.52 -8.02 16.53 5.24 0.09 -7.93 16 7 C 0.00 0.04 7.04 -82.04 -0.58 -0.53 16 8 C -0.12 -0.96 10.60 -39.25 -0.42 -1.38 16 9 C -0.12 -0.82 10.80 -39.22 -0.42 -1.25 16 10 C 0.08 0.61 6.93 -83.82 -0.58 0.03 16 11 C 0.28 2.37 15.89 -22.48 -0.36 2.01 16 12 N -0.40 -4.32 18.54 41.84 0.78 -3.55 16 13 N -0.51 -3.51 6.02 -6.96 -0.04 -3.55 16 14 H 0.42 1.94 8.15 -40.82 -0.33 1.61 16 15 C -0.15 -2.44 3.35 -89.69 -0.30 -2.74 16 16 C 0.18 3.89 6.98 -2.84 -0.02 3.87 16 17 N -0.61 -15.17 3.70 -177.68 -0.66 -15.83 16 18 C -0.23 -6.23 10.70 -15.06 -0.16 -6.39 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -26.78 11.39 55.49 0.63 -26.14 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.12 2.36 8.38 -2.96 -0.02 2.34 16 27 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 3.20 7.70 -40.82 -0.31 2.89 16 31 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.08 1.85 7.17 -51.93 -0.37 1.48 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -33.28 337.20 -7.03 -40.30 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.75 Total: 0.10 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.86 Total: 2.73 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.44 Total: -57.11 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.28 -7.03 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969515271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.970 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds