Wall clock time and date at job start Tue Mar 31 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47334 * 2 1 4 4 N 1.46497 * 109.47309 * 239.99602 * 2 1 3 5 5 C 1.34776 * 119.99630 * 85.00100 * 4 2 1 6 6 O 1.21644 * 120.00287 * 0.02562 * 5 4 2 7 7 C 1.47059 * 119.99707 * 180.02562 * 5 4 2 8 8 C 1.38006 * 125.91735 * 179.69157 * 7 5 4 9 9 C 1.39362 * 107.48526 * 179.88108 * 8 7 5 10 10 C 1.38079 * 107.51313 * 0.38286 * 9 8 7 11 11 C 1.43194 * 125.89478 * 179.76846 * 10 9 8 12 12 N 7.84884 * 109.95960 * 231.64894 * 2 1 3 13 13 N 1.36724 * 108.20941 * 359.76121 * 10 9 8 14 14 H 0.97000 * 125.68424 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.46691 * 119.99653 * 2 1 3 16 16 C 1.53943 * 113.74673 * 281.82161 * 15 2 1 17 17 N 1.47815 * 86.03777 * 222.08643 * 16 15 2 18 18 C 1.36929 * 134.45498 * 204.64052 * 17 16 15 19 19 H 1.08008 * 120.00026 * 179.86978 * 18 17 16 20 20 C 1.38817 * 120.00176 * 359.86967 * 18 17 16 21 21 N 1.31611 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00016 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47036 * 90.00200 * 22 20 18 24 24 H 1.48498 * 109.46900 * 209.99879 * 22 20 18 25 25 H 1.48506 * 109.47066 * 330.00009 * 22 20 18 26 26 C 1.47584 * 91.05097 * 24.55008 * 17 16 15 27 27 H 1.09003 * 109.47381 * 300.07557 * 1 2 3 28 28 H 1.09000 * 109.46959 * 60.07874 * 1 2 3 29 29 H 1.08996 * 109.47385 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00146 * 265.00558 * 4 2 1 31 31 H 1.07995 * 126.25865 * 359.97438 * 8 7 5 32 32 H 1.07999 * 126.24306 * 180.12943 * 9 8 7 33 33 H 1.09000 * 112.94713 * 53.41815 * 15 2 1 34 34 H 1.09003 * 113.76499 * 336.35102 * 16 15 2 35 35 H 1.08998 * 113.76796 * 107.74658 * 16 15 2 36 36 H 0.97005 * 120.00065 * 180.02562 * 21 20 18 37 37 H 1.08999 * 113.76670 * 221.15110 * 26 17 16 38 38 H 1.08994 * 113.87033 * 89.76641 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3570 6 8 1.8582 1.1621 -2.4116 7 6 2.6368 -0.7118 -3.5579 8 6 2.8091 -0.1469 -4.8052 9 6 3.2903 -1.1429 -5.6530 10 6 3.3964 -2.3034 -4.9124 11 6 3.8483 -3.5718 -5.3996 12 7 4.2093 -4.5775 -5.7855 13 7 2.9955 -2.0325 -3.6337 14 1 2.9689 -2.6689 -2.9022 15 6 2.0399 -0.7212 1.2493 16 6 1.9743 0.1330 2.5284 17 7 3.3097 -0.4179 2.8417 18 6 4.0192 -0.6143 3.9963 19 1 5.0065 -1.0504 3.9558 20 6 3.4696 -0.2531 5.2188 21 7 2.2667 0.2788 5.2680 22 14 4.4373 -0.5218 6.7938 23 1 5.2532 0.6842 7.0854 24 1 3.4969 -0.7665 7.9168 25 1 5.3309 -1.6967 6.6314 26 6 3.5701 -0.6730 1.4116 27 1 -0.3634 0.5150 0.8893 28 1 -0.3633 0.5126 -0.8907 29 1 -0.3634 -1.0276 0.0005 30 1 2.2490 -1.6318 -1.1525 31 1 2.6092 0.8796 -5.0747 32 1 3.5319 -1.0288 -6.6994 33 1 1.6175 -1.7192 1.3660 34 1 1.9751 1.2066 2.3401 35 1 1.1952 -0.1776 3.2245 36 1 1.8828 0.5316 6.1222 37 1 4.0627 -1.6258 1.2179 38 1 4.0407 0.1623 0.8932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969515271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:43 Heat of formation + Delta-G solvation = 69.927492 kcal Electronic energy + Delta-G solvation = -21693.615782 eV Core-core repulsion = 18344.981902 eV Total energy + Delta-G solvation = -3348.633880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45868 -40.72415 -39.46605 -37.60017 -36.25403 -34.18828 -32.61114 -31.92356 -30.51101 -29.30776 -26.64777 -25.85452 -24.97080 -22.97978 -21.92061 -21.36101 -21.24214 -20.23147 -18.78242 -18.41827 -17.29576 -16.84306 -16.39304 -15.92656 -15.83534 -15.53039 -15.36953 -15.04199 -14.71127 -14.52393 -14.29354 -14.13909 -13.93211 -13.71274 -13.36269 -13.26390 -13.25133 -13.06763 -12.95878 -12.67596 -12.38283 -12.03824 -11.81375 -11.60788 -11.25074 -11.10387 -10.86762 -10.17686 -10.13028 -9.35588 -8.91831 -7.91132 -5.24155 -0.06992 1.14963 1.16487 1.45314 1.47008 1.55417 1.95719 2.09355 2.32125 2.38567 2.46954 2.93475 3.29346 3.39267 3.63420 3.85923 3.97190 4.16130 4.26157 4.30853 4.46427 4.59422 4.77056 4.83626 4.87910 4.89123 4.96457 5.08951 5.16600 5.25972 5.34463 5.42323 5.51582 5.55457 5.66039 5.73555 5.94634 6.09254 6.32366 6.52509 6.92189 7.13192 7.60816 8.56208 9.25744 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.003187 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.771295 B = 8784.720611 C = 9579.816193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.068 0.932 4 N -0.705 5.705 5 C 0.587 3.413 6 O -0.560 6.560 7 C -0.007 4.007 8 C -0.119 4.119 9 C -0.112 4.112 10 C 0.088 3.912 11 C 0.301 3.699 12 N -0.438 5.438 13 N -0.503 5.503 14 H 0.434 0.566 15 C -0.109 4.109 16 C 0.170 3.830 17 N -0.645 5.645 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.977 3.023 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.126 3.874 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.409 0.591 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.106 0.894 34 H 0.013 0.987 35 H 0.046 0.954 36 H 0.249 0.751 37 H 0.061 0.939 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -4.581 -21.001 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.086 0.914 4 N -0.356 5.356 5 C 0.374 3.626 6 O -0.438 6.438 7 C -0.125 4.125 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.030 4.030 11 C -0.014 4.014 12 N -0.115 5.115 13 N -0.101 5.101 14 H 0.275 0.725 15 C -0.129 4.129 16 C 0.044 3.956 17 N -0.371 5.371 18 C -0.365 4.365 19 H 0.100 0.900 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.001 3.999 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.245 0.755 31 H 0.182 0.818 32 H 0.201 0.799 33 H 0.124 0.876 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.451 -5.414 -21.095 21.827 hybrid contribution 0.432 -0.065 1.878 1.928 sum -1.019 -5.479 -19.218 20.009 Atomic orbital electron populations 1.22056 0.93840 1.03049 1.02179 1.20808 0.94833 0.96125 0.82416 0.91382 1.45834 1.66529 1.14323 1.08930 1.17325 0.77266 0.85912 0.82100 1.90852 1.51890 1.16287 1.84771 1.20413 1.11508 0.84068 0.96530 1.21491 1.02017 1.01017 0.90028 1.21569 1.02441 0.88824 1.01160 1.15545 1.12266 0.89131 0.86020 1.24306 0.92385 0.90926 0.93784 1.81384 1.11142 1.10995 1.07990 1.41802 1.48897 1.09531 1.09905 0.72468 1.23465 0.95910 1.00426 0.93087 1.22146 0.88123 0.93848 0.91499 1.46418 1.17363 1.72148 1.01194 1.19423 0.98770 1.34092 0.84245 0.89980 1.25605 0.98124 1.01613 1.00615 1.69984 1.16823 1.48651 1.24640 0.85109 0.77436 0.77907 0.79065 1.21635 1.21963 1.19194 1.22706 0.94851 0.98510 0.83822 0.91799 0.92472 0.90798 0.75495 0.81753 0.79928 0.87579 0.96880 0.93571 0.94226 0.92082 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.44 71.98 0.68 -2.95 16 2 C 0.16 4.30 2.29 44.99 0.10 4.40 16 3 H 0.07 2.19 7.48 -2.39 -0.02 2.17 16 4 N -0.71 -13.85 4.94 -446.16 -2.20 -16.06 16 5 C 0.59 12.93 7.77 86.56 0.67 13.61 16 6 O -0.56 -16.98 16.53 -4.17 -0.07 -17.05 16 7 C -0.01 -0.10 7.04 40.59 0.29 0.18 16 8 C -0.12 -1.66 10.60 22.49 0.24 -1.43 16 9 C -0.11 -1.14 10.80 22.50 0.24 -0.89 16 10 C 0.09 1.02 6.93 39.59 0.27 1.30 16 11 C 0.30 4.44 15.89 88.33 1.40 5.84 16 12 N -0.44 -8.77 18.54 19.00 0.35 -8.42 16 13 N -0.50 -5.42 6.02 -175.94 -1.06 -6.47 16 14 H 0.43 2.62 8.15 -92.71 -0.76 1.86 16 15 C -0.11 -3.46 3.35 -10.13 -0.03 -3.49 16 16 C 0.17 7.67 6.98 86.44 0.60 8.27 16 17 N -0.64 -32.08 3.70 -716.07 -2.65 -34.73 16 18 C -0.24 -13.13 10.70 84.04 0.90 -12.23 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 21 N -0.95 -56.84 11.39 21.65 0.25 -56.59 16 22 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.13 4.61 8.38 86.49 0.72 5.33 16 27 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.41 5.40 7.70 -92.71 -0.71 4.69 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.01 0.64 8.03 -2.39 -0.02 0.62 16 35 H 0.05 2.34 7.17 -2.39 -0.02 2.33 16 36 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -73.33 337.20 2.84 -70.49 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -0.36 Total: 6.85 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.56 Total: 14.65 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -5.32 Total: -122.27 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.07 Total: -17.05 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -73.33 2.84 -70.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969515271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.420 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds