Wall clock time and date at job start Tue Mar 31 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47155 * 2 1 4 4 N 1.46498 * 109.47184 * 240.00681 * 2 1 3 5 5 C 1.34777 * 120.00067 * 84.99403 * 4 2 1 6 6 O 1.21274 * 120.00095 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99706 * 180.02562 * 5 4 2 8 8 H 1.09004 * 112.84822 * 311.19144 * 7 5 4 9 9 C 1.53783 * 113.69274 * 82.46816 * 7 5 4 10 10 C 1.53780 * 87.08040 * 139.99044 * 9 7 5 11 11 C 1.53778 * 87.08085 * 334.56534 * 10 9 7 12 12 F 1.39910 * 113.61344 * 139.98314 * 11 10 9 13 13 F 1.39897 * 113.61581 * 270.79725 * 11 10 9 14 14 C 1.52997 * 109.47175 * 120.00536 * 2 1 3 15 15 C 1.53953 * 113.74088 * 281.81737 * 14 2 1 16 16 N 1.47811 * 86.03517 * 222.08608 * 15 14 2 17 17 C 1.36939 * 134.45484 * 204.64391 * 16 15 14 18 18 H 1.08005 * 120.00040 * 179.87637 * 17 16 15 19 19 C 1.38810 * 119.99871 * 359.86829 * 17 16 15 20 20 N 1.31621 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99890 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47434 * 60.00016 * 21 19 17 23 23 H 1.48500 * 109.46848 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46784 * 300.00006 * 21 19 17 25 25 C 1.47581 * 91.05583 * 24.55439 * 16 15 14 26 26 H 1.09001 * 109.46729 * 300.04913 * 1 2 3 27 27 H 1.08994 * 109.46882 * 60.05088 * 1 2 3 28 28 H 1.08997 * 109.46701 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00089 * 265.00286 * 4 2 1 30 30 H 1.08995 * 113.61224 * 25.43942 * 9 7 5 31 31 H 1.08998 * 113.60878 * 254.53770 * 9 7 5 32 32 H 1.09004 * 113.60844 * 220.01612 * 10 9 7 33 33 H 1.08998 * 113.61676 * 89.11849 * 10 9 7 34 34 H 1.08998 * 112.94781 * 53.41628 * 14 2 1 35 35 H 1.09002 * 113.77038 * 336.35399 * 15 14 2 36 36 H 1.08999 * 113.76340 * 107.74689 * 15 14 2 37 37 H 0.97003 * 119.99655 * 180.02562 * 20 19 17 38 38 H 1.08996 * 113.76989 * 221.15346 * 25 16 15 39 39 H 1.08997 * 113.76979 * 89.74830 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0180 -2.3572 6 8 1.8589 1.1588 -2.4114 7 6 2.6488 -0.7285 -3.5878 8 1 3.5541 -1.3069 -3.4031 9 6 1.5583 -1.5132 -4.3362 10 6 2.2058 -1.0163 -5.6396 11 6 2.7383 0.1764 -4.8280 12 9 4.0470 0.5418 -5.1618 13 9 1.8622 1.2664 -4.7931 14 6 2.0400 -0.7213 1.2491 15 6 1.9746 0.1328 2.5283 16 7 3.3099 -0.4180 2.8415 17 6 4.0196 -0.6147 3.9961 18 1 5.0069 -1.0506 3.9555 19 6 3.4701 -0.2535 5.2185 20 7 2.2671 0.2784 5.2679 21 14 4.4384 -0.5211 6.7934 22 1 5.7082 0.2462 6.7302 23 1 3.6357 -0.0561 7.9530 24 1 4.7408 -1.9667 6.9490 25 6 3.5703 -0.6730 1.4114 26 1 -0.3633 0.5146 0.8896 27 1 -0.3633 0.5130 -0.8904 28 1 -0.3632 -1.0277 0.0005 29 1 2.2491 -1.6316 -1.1528 30 1 0.5525 -1.1263 -4.1732 31 1 1.6253 -2.5924 -4.1992 32 1 1.4837 -0.7352 -6.4062 33 1 2.9898 -1.6734 -6.0158 34 1 1.6177 -1.7194 1.3657 35 1 1.9752 1.2065 2.3402 36 1 1.1955 -0.1778 3.2245 37 1 1.8833 0.5311 6.1222 38 1 4.0629 -1.6258 1.2176 39 1 4.0407 0.1634 0.8945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969935357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:58 Heat of formation + Delta-G solvation = -84.889969 kcal Electronic energy + Delta-G solvation = -23329.559043 eV Core-core repulsion = 19523.522587 eV Total energy + Delta-G solvation = -3806.036455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.74517 -48.10022 -41.21406 -39.82256 -38.02928 -36.17221 -34.14860 -31.98530 -29.36805 -28.11838 -26.50693 -25.94797 -25.66034 -23.20710 -21.78387 -21.17836 -20.59443 -18.97034 -18.80310 -18.25060 -17.61516 -17.05131 -16.89561 -16.63506 -16.02578 -15.78969 -15.52118 -15.07334 -14.94267 -14.72964 -14.57982 -14.35095 -14.09181 -13.82029 -13.43654 -13.26874 -13.09664 -12.95618 -12.78712 -12.65765 -12.44936 -12.35661 -12.12292 -12.01820 -11.81192 -11.67862 -11.58161 -11.22562 -10.86466 -10.67468 -10.05727 -8.93172 -7.91152 -5.24994 1.44969 1.48584 1.53891 1.54752 2.06290 2.47074 2.54021 2.79692 3.28898 3.34786 3.38367 3.41605 3.45676 3.71067 3.96704 3.99445 4.26236 4.38685 4.45335 4.53152 4.56489 4.57567 4.76343 4.77843 4.84190 4.85727 4.94275 4.95806 5.09614 5.21307 5.24191 5.29971 5.51932 5.54489 5.64636 5.93212 6.58156 6.90997 7.27126 7.60141 8.55747 9.25616 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.035021 B = 0.003252 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.322979 B = 8609.275605 C = 8897.770122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 H 0.054 0.946 4 N -0.699 5.699 5 C 0.514 3.486 6 O -0.577 6.577 7 C -0.166 4.166 8 H 0.170 0.830 9 C -0.104 4.104 10 C -0.143 4.143 11 C 0.244 3.756 12 F -0.205 7.205 13 F -0.188 7.188 14 C -0.106 4.106 15 C 0.168 3.832 16 N -0.644 5.644 17 C -0.240 4.240 18 H 0.084 0.916 19 C -0.067 4.067 20 N -0.954 5.954 21 Si 0.980 3.020 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.272 1.272 25 C 0.127 3.873 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.418 0.582 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.007 0.993 36 H 0.047 0.953 37 H 0.249 0.751 38 H 0.066 0.934 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -9.563 -22.892 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.072 0.928 4 N -0.351 5.351 5 C 0.300 3.700 6 O -0.456 6.456 7 C -0.187 4.187 8 H 0.188 0.812 9 C -0.142 4.142 10 C -0.181 4.181 11 C 0.207 3.793 12 F -0.186 7.186 13 F -0.168 7.168 14 C -0.126 4.126 15 C 0.042 3.958 16 N -0.370 5.370 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.002 3.998 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.157 0.843 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.128 0.872 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.621 -8.687 -22.587 24.341 hybrid contribution 0.719 0.718 1.382 1.715 sum -1.901 -7.969 -21.205 22.733 Atomic orbital electron populations 1.22024 0.94010 1.03143 1.01652 1.20738 0.94777 0.95701 0.83272 0.92817 1.45859 1.66229 1.14734 1.08251 1.20711 0.77401 0.86772 0.85096 1.90777 1.51576 1.17898 1.85380 1.24274 1.05515 0.98322 0.90620 0.81213 1.22814 0.96245 1.03238 0.91878 1.24116 1.02739 0.92655 0.98586 1.22709 0.73323 0.83798 0.99442 1.92985 1.38444 1.93741 1.93430 1.93039 1.68396 1.58304 1.97105 1.23442 0.95905 1.00423 0.92781 1.22144 0.88298 0.93583 0.91729 1.46424 1.17292 1.72084 1.01228 1.19423 0.98876 1.34308 0.84218 0.89833 1.25648 0.98142 1.01472 1.00740 1.69998 1.16939 1.48566 1.24718 0.85142 0.77370 0.78196 0.78549 1.20685 1.22035 1.19745 1.22685 0.94911 0.98444 0.83748 0.92152 0.93161 0.90241 0.74483 0.89424 0.84348 0.87521 0.83804 0.87173 0.97522 0.93421 0.94228 0.91592 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.44 71.98 0.68 -3.32 16 2 C 0.16 4.76 2.29 44.99 0.10 4.86 16 3 H 0.05 1.99 7.48 -2.39 -0.02 1.98 16 4 N -0.70 -15.56 4.94 -442.53 -2.19 -17.75 16 5 C 0.51 13.02 7.28 87.66 0.64 13.66 16 6 O -0.58 -21.05 14.42 -3.01 -0.04 -21.09 16 7 C -0.17 -2.58 4.03 -11.01 -0.04 -2.62 16 8 H 0.17 1.57 8.14 -2.39 -0.02 1.55 16 9 C -0.10 -0.86 7.61 31.12 0.24 -0.63 16 10 C -0.14 -1.26 7.87 31.12 0.24 -1.02 16 11 C 0.24 4.95 3.01 31.12 0.09 5.04 16 12 F -0.21 -4.87 17.41 44.97 0.78 -4.09 16 13 F -0.19 -5.47 15.21 44.97 0.68 -4.79 16 14 C -0.11 -3.59 3.35 -10.13 -0.03 -3.63 16 15 C 0.17 8.01 6.98 86.44 0.60 8.61 16 16 N -0.64 -33.20 3.70 -716.07 -2.65 -35.85 16 17 C -0.24 -13.60 10.70 84.03 0.90 -12.70 16 18 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.95 -58.07 11.39 21.65 0.25 -57.82 16 21 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C 0.13 4.92 8.38 86.49 0.72 5.65 16 26 H 0.06 1.73 8.09 -2.39 -0.02 1.72 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.42 6.21 8.60 -92.71 -0.80 5.41 16 30 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.01 0.35 8.03 -2.39 -0.02 0.33 16 36 H 0.05 2.51 7.17 -2.39 -0.02 2.49 16 37 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -79.34 331.23 3.73 -75.60 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.26 Total: 7.32 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 4.61 Total: 10.53 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.59 Total: -111.43 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.04 Total: -21.09 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 1.47 Total: -8.88 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.34 3.73 -75.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969935357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.286 kcal (2) G-P(sol) polarization free energy of solvation -79.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds