Wall clock time and date at job start Tue Mar 31 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 120.00611 * 2 1 4 4 H 1.07998 * 120.00518 * 153.26697 * 3 2 1 5 5 C 1.38815 * 119.99712 * 333.00350 * 3 2 1 6 6 N 1.31619 * 119.99757 * 350.50081 * 5 3 2 7 7 Si 1.86798 * 120.00077 * 170.50609 * 5 3 2 8 8 H 1.48500 * 109.47160 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47252 * 119.99568 * 7 5 3 10 10 H 1.48502 * 109.47008 * 239.99609 * 7 5 3 11 11 C 1.46498 * 119.99916 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.64403 * 183.14319 * 11 2 1 13 13 C 1.55159 * 110.72161 * 59.99675 * 11 2 1 14 14 C 1.54906 * 101.58229 * 206.13506 * 13 11 2 15 15 N 1.47423 * 104.83595 * 37.01171 * 14 13 11 16 16 C 1.34775 * 125.65273 * 155.82246 * 15 14 13 17 17 O 1.21642 * 119.99816 * 355.10917 * 16 15 14 18 18 C 1.47057 * 119.99854 * 175.11012 * 16 15 14 19 19 C 1.38000 * 125.91382 * 185.14117 * 18 16 15 20 20 C 1.39355 * 107.48427 * 179.89657 * 19 18 16 21 21 C 1.38082 * 107.51471 * 0.36751 * 20 19 18 22 22 C 1.43200 * 125.89756 * 179.81302 * 21 20 19 23 23 N 7.06457 * 80.93131 * 106.10281 * 2 1 3 24 24 N 1.36716 * 108.20798 * 359.76675 * 21 20 19 25 25 H 0.97007 * 125.68700 * 179.97438 * 24 21 20 26 26 C 1.47028 * 108.69790 * 335.87283 * 15 14 13 27 27 H 1.09000 * 109.47299 * 92.21985 * 1 2 3 28 28 H 1.08999 * 109.47315 * 212.22632 * 1 2 3 29 29 H 1.09002 * 109.46984 * 332.21835 * 1 2 3 30 30 H 0.96995 * 119.99915 * 180.02562 * 6 5 3 31 31 H 1.08996 * 111.00506 * 324.21179 * 13 11 2 32 32 H 1.09001 * 111.00147 * 88.02348 * 13 11 2 33 33 H 1.09007 * 110.36693 * 155.84704 * 14 13 11 34 34 H 1.08995 * 110.37044 * 278.05772 * 14 13 11 35 35 H 1.07998 * 126.25876 * 0.03874 * 19 18 16 36 36 H 1.08002 * 126.24666 * 180.09834 * 20 19 18 37 37 H 1.09009 * 109.87728 * 241.64187 * 26 15 14 38 38 H 1.08992 * 109.88674 * 120.47760 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1431 1.2358 0.4207 5 6 1.5692 2.3225 -0.5457 6 7 0.4473 2.2260 -1.2272 7 14 2.3802 3.9891 -0.3131 8 1 3.6219 3.8282 0.4854 9 1 2.7155 4.5659 -1.6397 10 1 1.4476 4.8981 0.4006 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0923 0.0554 13 6 1.8434 -2.1064 -1.2577 14 6 2.1170 -3.5471 -0.7585 15 7 1.6776 -3.5489 0.6487 16 6 1.2932 -4.6335 1.3503 17 8 1.2050 -5.7144 0.7993 18 6 0.9802 -4.5102 2.7819 19 6 0.6737 -5.5499 3.6359 20 6 0.4476 -5.0027 4.8974 21 6 0.6113 -3.6356 4.7928 22 6 0.4665 -2.6888 5.8573 23 7 0.3514 -1.9349 6.7026 24 7 0.9367 -3.3422 3.4978 25 1 1.1077 -2.4552 3.1443 26 6 1.7272 -2.1711 1.1597 27 1 -0.3634 -0.0398 -1.0269 28 1 -0.3634 -0.8693 0.5480 29 1 -0.3633 0.9092 0.4790 30 1 0.0418 3.0201 -1.6088 31 1 0.7956 -1.9795 -1.5295 32 1 2.4952 -1.8515 -2.0933 33 1 1.5372 -4.2658 -1.3378 34 1 3.1804 -3.7765 -0.8260 35 1 0.6211 -6.5966 3.3749 36 1 0.1871 -5.5479 5.7926 37 1 2.4332 -2.1082 1.9878 38 1 0.7357 -1.8626 1.4908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971365953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:24 Heat of formation + Delta-G solvation = 81.787172 kcal Electronic energy + Delta-G solvation = -22550.924425 eV Core-core repulsion = 19202.804819 eV Total energy + Delta-G solvation = -3348.119606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70381 -39.53612 -37.62454 -36.58262 -34.94434 -32.10750 -31.47904 -30.61231 -29.38693 -28.08988 -26.24474 -24.83269 -23.21434 -22.23327 -20.94712 -20.74534 -19.64173 -18.56623 -17.36584 -17.14695 -16.17210 -15.58963 -15.27832 -14.92290 -14.65064 -14.13587 -13.84076 -13.67909 -13.44287 -13.38155 -13.15875 -13.04159 -12.88800 -12.67066 -12.53448 -12.36625 -11.87954 -11.47209 -11.12196 -10.92952 -10.82890 -10.62892 -10.40087 -10.23723 -10.09785 -9.94432 -9.40053 -8.75299 -8.71815 -8.42835 -6.96461 -5.94778 -3.45306 0.80830 1.97935 2.02628 2.82276 3.00001 3.21285 3.24282 3.25961 3.34181 3.35334 3.77181 4.26328 4.41253 4.87978 4.92137 4.96550 5.10241 5.13001 5.29061 5.40084 5.55704 5.58318 5.65686 5.76265 5.81888 5.95377 6.14867 6.20917 6.35519 6.45741 6.51982 6.57045 6.70165 6.86892 7.13274 7.19215 7.44667 7.51541 7.62574 8.04223 8.20182 9.01411 9.61695 10.11394 11.11485 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.004847 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.689793 B = 5775.736451 C = 7211.833401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.269 4.269 4 H 0.071 0.929 5 C 0.011 3.989 6 N -0.901 5.901 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.288 1.288 11 C 0.175 3.825 12 H 0.084 0.916 13 C -0.151 4.151 14 C 0.108 3.892 15 N -0.609 5.609 16 C 0.598 3.402 17 O -0.529 6.529 18 C 0.006 3.994 19 C -0.119 4.119 20 C -0.126 4.126 21 C 0.084 3.916 22 C 0.274 3.726 23 N -0.396 5.396 24 N -0.514 5.514 25 H 0.428 0.572 26 C 0.059 3.941 27 H 0.027 0.973 28 H -0.004 1.004 29 H 0.055 0.945 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.063 0.937 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -12.948 6.507 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.398 4.398 4 H 0.088 0.912 5 C -0.189 4.189 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.065 3.935 12 H 0.102 0.898 13 C -0.191 4.191 14 C -0.014 4.014 15 N -0.343 5.343 16 C 0.386 3.614 17 O -0.406 6.406 18 C -0.113 4.113 19 C -0.145 4.145 20 C -0.155 4.155 21 C -0.034 4.034 22 C -0.041 4.041 23 N -0.073 5.073 24 N -0.116 5.116 25 H 0.274 0.726 26 C -0.066 4.066 27 H 0.045 0.955 28 H 0.014 0.986 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.130 -12.042 7.355 14.156 hybrid contribution 0.414 1.268 -0.446 1.406 sum 1.544 -10.775 6.908 12.892 Atomic orbital electron populations 1.20819 0.82552 0.96705 0.98586 1.43874 1.01745 0.99806 1.85081 1.19230 1.00936 0.85946 1.33689 0.91169 1.25136 0.97708 0.98997 0.97037 1.70041 1.19763 1.28257 1.36414 0.86163 0.78815 0.83874 0.77527 1.20169 1.21468 1.21475 1.21277 0.96640 0.85919 0.89697 0.89776 1.23405 1.03209 0.92328 1.00206 1.22312 0.99481 0.99111 0.80512 1.48420 1.64839 1.07077 1.13937 1.16716 0.77483 0.83408 0.83748 1.90830 1.53945 1.26327 1.69502 1.20668 1.12215 0.85806 0.92641 1.21222 1.03289 0.98850 0.91147 1.21231 1.05161 0.90109 0.98984 1.15656 1.14485 0.91336 0.81959 1.24427 0.93791 0.92717 0.93196 1.81428 1.09406 1.06874 1.09615 1.42789 1.51463 1.10265 1.07071 0.72623 1.23077 1.01469 0.81714 1.00381 0.95508 0.98588 0.92675 0.93468 0.90483 0.89957 0.90534 0.91322 0.82204 0.82522 0.91937 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.48 7.89 59.84 0.47 3.95 16 2 N -0.58 -12.82 2.92 -171.39 -0.50 -13.32 16 3 C -0.27 -6.67 9.57 -15.06 -0.14 -6.81 16 4 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 5 C 0.01 0.28 5.11 -17.43 -0.09 0.19 16 6 N -0.90 -24.54 10.82 55.49 0.60 -23.94 16 7 Si 0.91 20.51 29.56 -169.99 -5.03 15.49 16 8 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.18 3.03 3.45 -66.10 -0.23 2.80 16 12 H 0.08 1.43 7.95 -51.93 -0.41 1.02 16 13 C -0.15 -2.37 6.66 -24.58 -0.16 -2.53 16 14 C 0.11 1.48 6.93 -2.53 -0.02 1.46 16 15 N -0.61 -8.67 3.33 -171.92 -0.57 -9.24 16 16 C 0.60 8.74 7.82 -12.69 -0.10 8.64 16 17 O -0.53 -9.00 17.11 5.24 0.09 -8.91 16 18 C 0.01 0.07 6.88 -82.04 -0.56 -0.50 16 19 C -0.12 -1.23 10.60 -39.25 -0.42 -1.65 16 20 C -0.13 -1.14 10.80 -39.22 -0.42 -1.56 16 21 C 0.08 0.89 6.93 -83.82 -0.58 0.31 16 22 C 0.27 3.24 15.90 -22.39 -0.36 2.89 16 23 N -0.40 -5.50 18.55 41.93 0.78 -4.72 16 24 N -0.51 -5.82 5.64 -6.96 -0.04 -5.86 16 25 H 0.43 4.84 4.91 -40.82 -0.20 4.64 16 26 C 0.06 0.85 4.69 -3.06 -0.01 0.83 16 27 H 0.03 0.64 7.55 -51.93 -0.39 0.25 16 28 H 0.00 -0.08 6.06 -51.93 -0.31 -0.39 16 29 H 0.05 1.34 7.03 -51.93 -0.36 0.98 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.34 7.24 -51.93 -0.38 0.97 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.05 7.99 -51.93 -0.41 0.64 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.06 0.80 7.13 -51.92 -0.37 0.43 16 38 H 0.08 1.13 4.96 -51.93 -0.26 0.87 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -29.01 321.85 -6.79 -35.80 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.34 Total: 1.84 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -2.62 Total: 8.01 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.27 Total: -57.07 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.01 -6.79 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971365953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.585 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds