Wall clock time and date at job start Tue Mar 31 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 120.00611 * 2 1 4 4 H 1.07998 * 120.00518 * 153.26697 * 3 2 1 5 5 C 1.38815 * 119.99712 * 333.00350 * 3 2 1 6 6 N 1.31619 * 119.99757 * 350.50081 * 5 3 2 7 7 Si 1.86798 * 120.00077 * 170.50609 * 5 3 2 8 8 H 1.48500 * 109.47160 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47252 * 119.99568 * 7 5 3 10 10 H 1.48502 * 109.47008 * 239.99609 * 7 5 3 11 11 C 1.46498 * 119.99916 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.64403 * 183.14319 * 11 2 1 13 13 C 1.55159 * 110.72161 * 59.99675 * 11 2 1 14 14 C 1.54906 * 101.58229 * 206.13506 * 13 11 2 15 15 N 1.47423 * 104.83595 * 37.01171 * 14 13 11 16 16 C 1.34775 * 125.65273 * 155.82246 * 15 14 13 17 17 O 1.21642 * 119.99816 * 355.10917 * 16 15 14 18 18 C 1.47057 * 119.99854 * 175.11012 * 16 15 14 19 19 C 1.38000 * 125.91382 * 185.14117 * 18 16 15 20 20 C 1.39355 * 107.48427 * 179.89657 * 19 18 16 21 21 C 1.38082 * 107.51471 * 0.36751 * 20 19 18 22 22 C 1.43200 * 125.89756 * 179.81302 * 21 20 19 23 23 N 7.06457 * 80.93131 * 106.10281 * 2 1 3 24 24 N 1.36716 * 108.20798 * 359.76675 * 21 20 19 25 25 H 0.97007 * 125.68700 * 179.97438 * 24 21 20 26 26 C 1.47028 * 108.69790 * 335.87283 * 15 14 13 27 27 H 1.09000 * 109.47299 * 92.21985 * 1 2 3 28 28 H 1.08999 * 109.47315 * 212.22632 * 1 2 3 29 29 H 1.09002 * 109.46984 * 332.21835 * 1 2 3 30 30 H 0.96995 * 119.99915 * 180.02562 * 6 5 3 31 31 H 1.08996 * 111.00506 * 324.21179 * 13 11 2 32 32 H 1.09001 * 111.00147 * 88.02348 * 13 11 2 33 33 H 1.09007 * 110.36693 * 155.84704 * 14 13 11 34 34 H 1.08995 * 110.37044 * 278.05772 * 14 13 11 35 35 H 1.07998 * 126.25876 * 0.03874 * 19 18 16 36 36 H 1.08002 * 126.24666 * 180.09834 * 20 19 18 37 37 H 1.09009 * 109.87728 * 241.64187 * 26 15 14 38 38 H 1.08992 * 109.88674 * 120.47760 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1431 1.2358 0.4207 5 6 1.5692 2.3225 -0.5457 6 7 0.4473 2.2260 -1.2272 7 14 2.3802 3.9891 -0.3131 8 1 3.6219 3.8282 0.4854 9 1 2.7155 4.5659 -1.6397 10 1 1.4476 4.8981 0.4006 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0923 0.0554 13 6 1.8434 -2.1064 -1.2577 14 6 2.1170 -3.5471 -0.7585 15 7 1.6776 -3.5489 0.6487 16 6 1.2932 -4.6335 1.3503 17 8 1.2050 -5.7144 0.7993 18 6 0.9802 -4.5102 2.7819 19 6 0.6737 -5.5499 3.6359 20 6 0.4476 -5.0027 4.8974 21 6 0.6113 -3.6356 4.7928 22 6 0.4665 -2.6888 5.8573 23 7 0.3514 -1.9349 6.7026 24 7 0.9367 -3.3422 3.4978 25 1 1.1077 -2.4552 3.1443 26 6 1.7272 -2.1711 1.1597 27 1 -0.3634 -0.0398 -1.0269 28 1 -0.3634 -0.8693 0.5480 29 1 -0.3633 0.9092 0.4790 30 1 0.0418 3.0201 -1.6088 31 1 0.7956 -1.9795 -1.5295 32 1 2.4952 -1.8515 -2.0933 33 1 1.5372 -4.2658 -1.3378 34 1 3.1804 -3.7765 -0.8260 35 1 0.6211 -6.5966 3.3749 36 1 0.1871 -5.5479 5.7926 37 1 2.4332 -2.1082 1.9878 38 1 0.7357 -1.8626 1.4908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971365953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:24 Heat of formation + Delta-G solvation = 64.586019 kcal Electronic energy + Delta-G solvation = -22551.670323 eV Core-core repulsion = 19202.804819 eV Total energy + Delta-G solvation = -3348.865503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61031 -40.68961 -38.94077 -37.57712 -36.55851 -33.55261 -32.64289 -31.76581 -30.47672 -29.42288 -28.09373 -26.03457 -24.73072 -23.31239 -21.95060 -21.64927 -21.04416 -19.59839 -18.97624 -18.37676 -17.54834 -16.92558 -16.51825 -16.01670 -15.83376 -15.50708 -15.09288 -14.97433 -14.58006 -14.54138 -14.38923 -14.29840 -14.02275 -13.87955 -13.62696 -13.32114 -13.21773 -12.98622 -12.89049 -12.59441 -12.36743 -12.31704 -12.04504 -11.87665 -11.60873 -11.29045 -10.66068 -10.20024 -9.85168 -9.36880 -8.79882 -7.88808 -5.39525 -0.11673 1.08961 1.11265 1.45778 1.49090 1.57242 1.76540 2.04235 2.21949 2.33747 2.47835 2.86854 3.25038 3.28116 3.60572 3.69363 3.86958 4.13093 4.17961 4.23264 4.27720 4.35365 4.46664 4.76281 4.84000 4.85260 4.88673 5.00310 5.12957 5.21633 5.26903 5.34073 5.49472 5.63378 5.68340 5.73672 5.97510 6.27123 6.28785 6.35118 6.92196 7.11331 7.79437 8.24973 9.16200 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.004847 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.689793 B = 5775.736451 C = 7211.833401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.598 5.598 3 C -0.266 4.266 4 H 0.078 0.922 5 C -0.044 4.044 6 N -0.935 5.935 7 Si 0.964 3.036 8 H -0.264 1.264 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.167 3.833 12 H 0.090 0.910 13 C -0.143 4.143 14 C 0.115 3.885 15 N -0.611 5.611 16 C 0.599 3.401 17 O -0.557 6.557 18 C -0.014 4.014 19 C -0.111 4.111 20 C -0.105 4.105 21 C 0.080 3.920 22 C 0.297 3.703 23 N -0.435 5.435 24 N -0.517 5.517 25 H 0.427 0.573 26 C 0.074 3.926 27 H -0.001 1.001 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.190 0.810 37 H 0.084 0.916 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -14.580 7.912 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.396 4.396 4 H 0.095 0.905 5 C -0.240 4.240 6 N -0.581 5.581 7 Si 0.793 3.207 8 H -0.188 1.188 9 H -0.221 1.221 10 H -0.223 1.223 11 C 0.058 3.942 12 H 0.108 0.892 13 C -0.183 4.183 14 C -0.007 4.007 15 N -0.344 5.344 16 C 0.389 3.611 17 O -0.436 6.436 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.133 4.133 21 C -0.038 4.038 22 C -0.018 4.018 23 N -0.113 5.113 24 N -0.119 5.119 25 H 0.271 0.729 26 C -0.051 4.051 27 H 0.017 0.983 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.192 0.808 36 H 0.208 0.792 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.131 -13.702 8.778 16.412 hybrid contribution 0.129 1.664 -0.860 1.877 sum 2.261 -12.039 7.919 14.586 Atomic orbital electron populations 1.20497 0.83071 0.96446 0.96940 1.43984 1.01693 1.00848 1.85398 1.19582 1.00950 0.87018 1.32003 0.90475 1.25804 0.98474 1.01988 0.97687 1.70193 1.21296 1.28394 1.38187 0.85255 0.78197 0.80299 0.76972 1.18805 1.22102 1.22291 1.21470 0.96570 0.84635 0.91502 0.89160 1.23234 1.01913 0.93537 0.99624 1.22279 1.00710 0.97403 0.80316 1.48437 1.64923 1.06955 1.14055 1.16961 0.76757 0.82835 0.84542 1.90814 1.55250 1.27172 1.70341 1.20497 1.14114 0.86755 0.91824 1.21512 1.01847 0.99175 0.91142 1.21613 1.02941 0.89201 0.99558 1.15751 1.14916 0.91744 0.81355 1.24477 0.92645 0.92025 0.92697 1.81457 1.10885 1.07962 1.10948 1.42704 1.51958 1.09960 1.07259 0.72879 1.22811 1.01636 0.81147 0.99490 0.98290 0.95619 0.95626 0.94253 0.92563 0.89695 0.90460 0.89312 0.80818 0.79249 0.89826 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.85 7.89 127.77 1.01 8.86 16 2 N -0.60 -26.07 2.92 -696.16 -2.04 -28.11 16 3 C -0.27 -13.08 9.57 84.03 0.80 -12.28 16 4 H 0.08 3.63 7.84 -2.91 -0.02 3.61 16 5 C -0.04 -2.27 5.11 84.86 0.43 -1.84 16 6 N -0.93 -52.26 10.82 21.65 0.23 -52.02 16 7 Si 0.96 42.47 29.56 68.60 2.03 44.50 16 8 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 9 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 11 C 0.17 5.55 3.45 46.18 0.16 5.71 16 12 H 0.09 2.90 7.95 -2.38 -0.02 2.88 16 13 C -0.14 -4.36 6.66 31.99 0.21 -4.15 16 14 C 0.11 2.95 6.93 86.85 0.60 3.55 16 15 N -0.61 -16.20 3.33 -816.07 -2.71 -18.92 16 16 C 0.60 16.34 7.82 86.56 0.68 17.01 16 17 O -0.56 -18.02 17.11 -4.16 -0.07 -18.09 16 18 C -0.01 -0.30 6.88 40.58 0.28 -0.02 16 19 C -0.11 -1.93 10.60 22.48 0.24 -1.69 16 20 C -0.11 -1.49 10.80 22.50 0.24 -1.25 16 21 C 0.08 1.47 6.93 39.59 0.27 1.75 16 22 C 0.30 6.42 15.90 88.30 1.40 7.82 16 23 N -0.43 -11.52 18.55 19.03 0.35 -11.17 16 24 N -0.52 -10.50 5.64 -175.94 -0.99 -11.49 16 25 H 0.43 8.78 4.91 -92.70 -0.46 8.32 16 26 C 0.07 1.99 4.69 86.73 0.41 2.40 16 27 H 0.00 -0.06 7.55 -2.39 -0.02 -0.08 16 28 H 0.03 0.97 6.06 -2.39 -0.01 0.96 16 29 H 0.02 1.27 7.03 -2.39 -0.02 1.25 16 30 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.06 1.96 7.24 -2.39 -0.02 1.95 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.08 2.01 7.99 -2.38 -0.02 1.99 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.08 1.93 7.13 -2.38 -0.02 1.91 16 38 H 0.07 1.99 4.96 -2.39 -0.01 1.98 16 Total: -1.00 -62.81 321.85 4.20 -58.62 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.65 Total: 10.82 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.74 Total: 25.88 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.16 Total: -121.71 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.07 Total: -18.09 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -62.81 4.20 -58.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971365953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.203 kcal (2) G-P(sol) polarization free energy of solvation -62.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds