Wall clock time and date at job start Tue Mar 31 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99879 * 2 1 4 4 H 1.08003 * 119.99964 * 203.48762 * 3 2 1 5 5 C 1.38815 * 120.00175 * 23.48542 * 3 2 1 6 6 N 1.31614 * 119.99901 * 14.42287 * 5 3 2 7 7 Si 1.86795 * 119.99805 * 194.42919 * 5 3 2 8 8 H 1.48503 * 109.47655 * 60.00078 * 7 5 3 9 9 H 1.48511 * 109.47122 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47236 * 299.99445 * 7 5 3 11 11 C 1.46505 * 119.99970 * 180.27146 * 2 1 3 12 12 H 1.08991 * 110.88202 * 179.30119 * 11 2 1 13 13 C 1.55152 * 111.00455 * 55.41973 * 11 2 1 14 14 C 1.54368 * 102.92085 * 206.45379 * 13 11 2 15 15 N 1.47015 * 107.28710 * 22.13895 * 14 13 11 16 16 C 1.34779 * 125.64938 * 181.05997 * 15 14 13 17 17 O 1.21282 * 120.00516 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.99732 * 0.03607 * 16 15 14 19 19 H 1.08998 * 115.55258 * 325.72212 * 18 16 15 20 20 C 1.52996 * 117.49598 * 111.39344 * 18 16 15 21 21 C 1.53001 * 60.00133 * 107.49010 * 20 18 16 22 22 H 1.08997 * 117.50001 * 252.51368 * 21 20 18 23 23 C 1.52997 * 117.49584 * 107.48762 * 21 20 18 24 24 F 1.39907 * 109.46963 * 231.37562 * 23 21 20 25 25 F 1.39894 * 109.47485 * 351.38043 * 23 21 20 26 26 C 1.47424 * 108.70648 * 1.09149 * 15 14 13 27 27 H 1.08998 * 109.47702 * 274.91088 * 1 2 3 28 28 H 1.09003 * 109.47499 * 34.91680 * 1 2 3 29 29 H 1.09004 * 109.47256 * 154.91517 * 1 2 3 30 30 H 0.97000 * 120.00436 * 180.02562 * 6 5 3 31 31 H 1.09001 * 110.71906 * 324.78519 * 13 11 2 32 32 H 1.08994 * 110.71935 * 88.05900 * 13 11 2 33 33 H 1.09000 * 109.84622 * 262.72999 * 14 13 11 34 34 H 1.08999 * 110.02998 * 141.65034 * 14 13 11 35 35 H 1.09006 * 117.50082 * 214.97594 * 20 18 16 36 36 H 1.08997 * 117.50238 * 359.97438 * 20 18 16 37 37 H 1.09005 * 109.47196 * 111.38312 * 23 21 20 38 38 H 1.09004 * 110.36784 * 217.02999 * 26 15 14 39 39 H 1.09009 * 110.45919 * 94.75640 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1626 1.2247 -0.3728 5 6 1.5418 2.3383 0.4791 6 7 0.4353 2.2532 1.1865 7 14 2.2944 4.0097 0.1195 8 1 2.3545 4.2200 -1.3494 9 1 1.4599 5.0716 0.7372 10 1 3.6666 4.0666 0.6843 11 6 2.1975 -1.2688 -0.0060 12 1 3.2736 -1.0960 -0.0176 13 6 1.7636 -2.1558 -1.2028 14 6 2.0553 -3.5847 -0.6969 15 7 2.0780 -3.5320 0.7721 16 6 2.3215 -4.5737 1.5919 17 8 2.3145 -4.4140 2.7942 18 6 2.6026 -5.9371 1.0146 19 1 2.0671 -6.1784 0.0964 20 6 4.0192 -6.4929 1.1731 21 6 2.8709 -7.0788 1.9973 22 1 2.8440 -6.8437 3.0613 23 6 2.3669 -8.4721 1.6160 24 9 0.9771 -8.4385 1.4591 25 9 2.9624 -8.8709 0.4146 26 6 1.7897 -2.1510 1.2002 27 1 -0.3634 0.0880 1.0238 28 1 -0.3634 0.8427 -0.5882 29 1 -0.3634 -0.9308 -0.4357 30 1 0.0103 3.0584 1.5210 31 1 0.7011 -2.0300 -1.4107 32 1 2.3601 -1.9296 -2.0865 33 1 3.0229 -3.9194 -1.0709 34 1 1.2730 -4.2661 -1.0313 35 1 4.4156 -7.1003 0.3594 36 1 4.7479 -5.8724 1.6946 37 1 2.6266 -9.1804 2.4029 38 1 2.3842 -1.8936 2.0768 39 1 0.7276 -2.0326 1.4149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971446564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:39 Heat of formation + Delta-G solvation = -82.233727 kcal Electronic energy + Delta-G solvation = -23153.694243 eV Core-core repulsion = 19347.772971 eV Total energy + Delta-G solvation = -3805.921272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.22798 -47.21639 -40.05743 -37.95995 -36.30822 -34.82206 -31.69047 -29.80122 -28.44900 -27.51830 -26.08093 -24.72873 -22.75465 -22.28444 -21.33854 -19.34448 -19.09203 -17.99499 -17.36118 -17.25950 -17.03550 -16.36126 -15.85166 -15.38430 -14.75336 -14.27668 -14.14430 -13.67516 -13.59912 -13.41838 -13.34004 -13.04896 -12.62766 -12.50424 -12.40815 -12.18326 -11.98991 -11.54086 -11.48832 -11.02061 -10.93157 -10.81648 -10.64580 -10.55036 -10.47753 -10.30795 -9.92543 -9.85904 -9.69374 -8.61876 -8.35236 -6.83258 -5.79033 -3.26988 2.47464 3.01647 3.30980 3.36354 3.42000 3.42669 3.57191 3.94474 4.09517 4.35423 4.44345 4.53286 4.80530 4.87823 4.98051 5.00266 5.23039 5.30746 5.35664 5.48773 5.56075 5.67420 5.69444 5.78422 5.87752 5.99194 6.27351 6.36428 6.50226 6.60071 6.75575 6.84814 7.28584 7.66493 7.74970 7.76101 8.29696 8.33968 9.15490 9.78019 10.27020 11.25414 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.003163 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.437221 B = 8849.826595 C = 8871.019525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.583 5.583 3 C -0.265 4.265 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.104 3.896 15 N -0.607 5.607 16 C 0.554 3.446 17 O -0.545 6.545 18 C -0.164 4.164 19 H 0.127 0.873 20 C -0.126 4.126 21 C -0.196 4.196 22 H 0.145 0.855 23 C 0.293 3.707 24 F -0.201 7.201 25 F -0.205 7.205 26 C 0.086 3.914 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.004 0.996 30 H 0.255 0.745 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -19.926 -2.841 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.020 4.020 15 N -0.340 5.340 16 C 0.341 3.659 17 O -0.424 6.424 18 C -0.185 4.185 19 H 0.145 0.855 20 C -0.164 4.164 21 C -0.215 4.215 22 H 0.163 0.837 23 C 0.240 3.760 24 F -0.182 7.182 25 F -0.186 7.186 26 C -0.038 4.038 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.707 -19.700 -2.114 20.364 hybrid contribution 0.080 0.895 -0.254 0.934 sum 4.786 -18.804 -2.368 19.548 Atomic orbital electron populations 1.20825 0.82481 0.95716 0.99675 1.43836 1.01853 0.99844 1.84833 1.19168 0.98970 0.85253 1.36019 0.91247 1.25056 0.97998 0.98696 0.97527 1.70060 1.20507 1.27662 1.36373 0.86305 0.78450 0.83579 0.77995 1.20977 1.21598 1.20829 1.21457 0.96414 0.85773 0.90097 0.90368 1.23218 1.02935 0.92829 1.00422 1.22054 1.00834 0.99142 0.79930 1.48416 1.68677 1.09700 1.07226 1.19054 0.76931 0.84028 0.85842 1.90696 1.52757 1.84431 1.14494 1.22231 1.02375 0.92412 1.01463 0.85487 1.23092 0.90065 1.01455 1.01762 1.23506 1.05418 0.91634 1.00976 0.83685 1.21276 0.74240 0.96255 0.84257 1.93016 1.31386 1.97540 1.96275 1.92962 1.83505 1.91975 1.50180 1.23163 1.01327 0.78685 1.00591 0.94876 0.93940 0.97788 0.93515 0.90367 0.90465 0.91689 0.92056 0.86578 0.87073 0.86177 0.90890 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.73 59.85 0.46 4.20 16 2 N -0.58 -14.07 2.96 -171.03 -0.51 -14.57 16 3 C -0.26 -7.07 9.60 -15.06 -0.14 -7.21 16 4 H 0.07 1.80 7.86 -52.48 -0.41 1.38 16 5 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 6 N -0.90 -25.92 10.82 55.49 0.60 -25.32 16 7 Si 0.91 21.43 29.58 -169.99 -5.03 16.41 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.17 3.40 3.54 -65.78 -0.23 3.16 16 12 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 13 C -0.15 -2.38 6.49 -24.88 -0.16 -2.54 16 14 C 0.10 1.37 6.28 -3.04 -0.02 1.35 16 15 N -0.61 -9.86 3.33 -170.49 -0.57 -10.43 16 16 C 0.55 8.92 7.63 -10.98 -0.08 8.84 16 17 O -0.55 -10.73 16.51 5.56 0.09 -10.64 16 18 C -0.16 -1.91 5.19 -91.77 -0.48 -2.39 16 19 H 0.13 1.36 7.73 -51.93 -0.40 0.96 16 20 C -0.13 -1.15 9.62 -26.73 -0.26 -1.40 16 21 C -0.20 -1.91 5.67 -90.62 -0.51 -2.42 16 22 H 0.15 1.50 7.67 -51.93 -0.40 1.10 16 23 C 0.29 2.42 5.67 37.16 0.21 2.63 16 24 F -0.20 -2.21 17.29 2.25 0.04 -2.17 16 25 F -0.20 -1.88 15.91 2.25 0.04 -1.85 16 26 C 0.09 1.68 6.49 -2.53 -0.02 1.66 16 27 H 0.03 0.87 7.34 -51.93 -0.38 0.48 16 28 H 0.04 1.08 7.40 -51.93 -0.38 0.70 16 29 H 0.00 0.08 6.17 -51.93 -0.32 -0.24 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.12 0.87 7.22 -51.93 -0.37 0.49 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 39 H 0.07 1.44 7.20 -51.92 -0.37 1.06 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -31.49 326.36 -7.18 -38.66 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.44 Total: -0.98 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.32 Total: 5.97 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.47 Total: -50.32 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.07 Total: -4.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.49 -7.18 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971446564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.571 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds