Wall clock time and date at job start Tue Mar 31 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99879 * 2 1 4 4 H 1.08003 * 119.99964 * 203.48762 * 3 2 1 5 5 C 1.38815 * 120.00175 * 23.48542 * 3 2 1 6 6 N 1.31614 * 119.99901 * 14.42287 * 5 3 2 7 7 Si 1.86795 * 119.99805 * 194.42919 * 5 3 2 8 8 H 1.48503 * 109.47655 * 60.00078 * 7 5 3 9 9 H 1.48511 * 109.47122 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47236 * 299.99445 * 7 5 3 11 11 C 1.46505 * 119.99970 * 180.27146 * 2 1 3 12 12 H 1.08991 * 110.88202 * 179.30119 * 11 2 1 13 13 C 1.55152 * 111.00455 * 55.41973 * 11 2 1 14 14 C 1.54368 * 102.92085 * 206.45379 * 13 11 2 15 15 N 1.47015 * 107.28710 * 22.13895 * 14 13 11 16 16 C 1.34779 * 125.64938 * 181.05997 * 15 14 13 17 17 O 1.21282 * 120.00516 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.99732 * 0.03607 * 16 15 14 19 19 H 1.08998 * 115.55258 * 325.72212 * 18 16 15 20 20 C 1.52996 * 117.49598 * 111.39344 * 18 16 15 21 21 C 1.53001 * 60.00133 * 107.49010 * 20 18 16 22 22 H 1.08997 * 117.50001 * 252.51368 * 21 20 18 23 23 C 1.52997 * 117.49584 * 107.48762 * 21 20 18 24 24 F 1.39907 * 109.46963 * 231.37562 * 23 21 20 25 25 F 1.39894 * 109.47485 * 351.38043 * 23 21 20 26 26 C 1.47424 * 108.70648 * 1.09149 * 15 14 13 27 27 H 1.08998 * 109.47702 * 274.91088 * 1 2 3 28 28 H 1.09003 * 109.47499 * 34.91680 * 1 2 3 29 29 H 1.09004 * 109.47256 * 154.91517 * 1 2 3 30 30 H 0.97000 * 120.00436 * 180.02562 * 6 5 3 31 31 H 1.09001 * 110.71906 * 324.78519 * 13 11 2 32 32 H 1.08994 * 110.71935 * 88.05900 * 13 11 2 33 33 H 1.09000 * 109.84622 * 262.72999 * 14 13 11 34 34 H 1.08999 * 110.02998 * 141.65034 * 14 13 11 35 35 H 1.09006 * 117.50082 * 214.97594 * 20 18 16 36 36 H 1.08997 * 117.50238 * 359.97438 * 20 18 16 37 37 H 1.09005 * 109.47196 * 111.38312 * 23 21 20 38 38 H 1.09004 * 110.36784 * 217.02999 * 26 15 14 39 39 H 1.09009 * 110.45919 * 94.75640 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1626 1.2247 -0.3728 5 6 1.5418 2.3383 0.4791 6 7 0.4353 2.2532 1.1865 7 14 2.2944 4.0097 0.1195 8 1 2.3545 4.2200 -1.3494 9 1 1.4599 5.0716 0.7372 10 1 3.6666 4.0666 0.6843 11 6 2.1975 -1.2688 -0.0060 12 1 3.2736 -1.0960 -0.0176 13 6 1.7636 -2.1558 -1.2028 14 6 2.0553 -3.5847 -0.6969 15 7 2.0780 -3.5320 0.7721 16 6 2.3215 -4.5737 1.5919 17 8 2.3145 -4.4140 2.7942 18 6 2.6026 -5.9371 1.0146 19 1 2.0671 -6.1784 0.0964 20 6 4.0192 -6.4929 1.1731 21 6 2.8709 -7.0788 1.9973 22 1 2.8440 -6.8437 3.0613 23 6 2.3669 -8.4721 1.6160 24 9 0.9771 -8.4385 1.4591 25 9 2.9624 -8.8709 0.4146 26 6 1.7897 -2.1510 1.2002 27 1 -0.3634 0.0880 1.0238 28 1 -0.3634 0.8427 -0.5882 29 1 -0.3634 -0.9308 -0.4357 30 1 0.0103 3.0584 1.5210 31 1 0.7011 -2.0300 -1.4107 32 1 2.3601 -1.9296 -2.0865 33 1 3.0229 -3.9194 -1.0709 34 1 1.2730 -4.2661 -1.0313 35 1 4.4156 -7.1003 0.3594 36 1 4.7479 -5.8724 1.6946 37 1 2.6266 -9.1804 2.4029 38 1 2.3842 -1.8936 2.0768 39 1 0.7276 -2.0326 1.4149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971446564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:38 Heat of formation + Delta-G solvation = -101.344853 kcal Electronic energy + Delta-G solvation = -23154.522964 eV Core-core repulsion = 19347.772971 eV Total energy + Delta-G solvation = -3806.749992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.90920 -47.91272 -41.31052 -39.29671 -37.39877 -36.56090 -33.50591 -31.33706 -29.79233 -28.41182 -28.06686 -26.04358 -24.32216 -23.49137 -22.10303 -20.97087 -20.16406 -19.02340 -18.90555 -18.04854 -18.03099 -17.46602 -17.34941 -16.63387 -16.39528 -15.73812 -15.10053 -14.94012 -14.84495 -14.58756 -14.39196 -14.30683 -14.17504 -14.02674 -13.50303 -13.32569 -13.15274 -13.11398 -12.74764 -12.52062 -12.42859 -12.27322 -12.22032 -12.06847 -11.87174 -11.74987 -11.43909 -11.42044 -11.01421 -10.64559 -9.72120 -8.81616 -7.85465 -5.35961 1.34106 1.47587 1.49550 1.56318 1.81995 2.46852 2.50423 2.84877 3.24567 3.28750 3.36279 3.49389 3.54789 3.63326 3.90313 3.96114 4.07765 4.19246 4.22347 4.30147 4.33294 4.43375 4.65412 4.67661 4.76460 4.84175 4.85088 4.99002 5.00532 5.16726 5.19888 5.28878 5.40879 5.63143 5.67799 6.29565 6.50191 7.03522 7.11363 7.81751 8.26304 9.17239 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.003163 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.437221 B = 8849.826595 C = 8871.019525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.600 5.600 3 C -0.271 4.271 4 H 0.076 0.924 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.972 3.028 8 H -0.274 1.274 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.166 3.834 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.107 3.893 15 N -0.609 5.609 16 C 0.548 3.452 17 O -0.592 6.592 18 C -0.177 4.177 19 H 0.144 0.856 20 C -0.103 4.103 21 C -0.194 4.194 22 H 0.136 0.864 23 C 0.295 3.705 24 F -0.218 7.218 25 F -0.208 7.208 26 C 0.097 3.903 27 H -0.001 1.001 28 H 0.018 0.982 29 H 0.037 0.963 30 H 0.249 0.751 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.162 0.838 38 H 0.042 0.958 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -22.192 -4.736 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.321 5.321 3 C -0.401 4.401 4 H 0.094 0.906 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.800 3.200 8 H -0.200 1.200 9 H -0.223 1.223 10 H -0.201 1.201 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.179 4.179 14 C -0.015 4.015 15 N -0.341 5.341 16 C 0.338 3.662 17 O -0.473 6.473 18 C -0.198 4.198 19 H 0.161 0.839 20 C -0.141 4.141 21 C -0.213 4.213 22 H 0.153 0.847 23 C 0.242 3.758 24 F -0.200 7.200 25 F -0.189 7.189 26 C -0.028 4.028 27 H 0.017 0.983 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.179 0.821 38 H 0.060 0.940 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.235 -22.016 -4.055 23.239 hybrid contribution -0.346 1.530 0.369 1.611 sum 5.889 -20.487 -3.686 21.633 Atomic orbital electron populations 1.20514 0.82741 0.96263 0.97413 1.44023 1.02014 1.00899 1.85143 1.19569 0.99261 0.86429 1.34877 0.90603 1.25853 0.98728 1.02152 0.97887 1.70240 1.22106 1.27949 1.38008 0.85280 0.77583 0.79176 0.78007 1.20015 1.22339 1.20131 1.21617 0.95922 0.84668 0.92059 0.90591 1.23082 1.02811 0.92985 0.99057 1.22251 1.03616 0.98044 0.77559 1.48478 1.68572 1.08266 1.08820 1.19879 0.75626 0.85391 0.85299 1.90670 1.54661 1.85363 1.16652 1.22157 1.05040 0.90028 1.02595 0.83877 1.23201 0.88649 1.00390 1.01814 1.23594 1.05545 0.91872 1.00309 0.84657 1.21606 0.73098 0.96104 0.85025 1.92985 1.32972 1.97587 1.96405 1.92955 1.83426 1.91884 1.50627 1.22712 0.99276 0.81320 0.99542 0.98281 0.96340 0.94471 0.94217 0.90941 0.88341 0.88486 0.89421 0.84104 0.87389 0.82116 0.93951 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.56 7.73 127.77 0.99 9.55 16 2 N -0.60 -29.31 2.96 -695.02 -2.05 -31.36 16 3 C -0.27 -14.63 9.60 84.03 0.81 -13.83 16 4 H 0.08 3.90 7.86 -2.91 -0.02 3.88 16 5 C -0.05 -2.82 5.07 84.86 0.43 -2.39 16 6 N -0.94 -55.77 10.82 21.65 0.23 -55.54 16 7 Si 0.97 44.63 29.58 68.60 2.03 46.66 16 8 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 9 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 C 0.17 6.46 3.54 46.38 0.16 6.63 16 12 H 0.08 2.96 7.95 -2.39 -0.02 2.95 16 13 C -0.14 -3.96 6.49 31.80 0.21 -3.76 16 14 C 0.11 2.45 6.28 86.75 0.55 3.00 16 15 N -0.61 -19.14 3.33 -811.70 -2.70 -21.84 16 16 C 0.55 17.25 7.63 87.66 0.67 17.92 16 17 O -0.59 -23.81 16.51 -3.04 -0.05 -23.86 16 18 C -0.18 -3.70 5.19 -11.54 -0.06 -3.76 16 19 H 0.14 2.54 7.73 -2.39 -0.02 2.52 16 20 C -0.10 -1.54 9.62 30.59 0.29 -1.25 16 21 C -0.19 -3.31 5.67 -10.79 -0.06 -3.37 16 22 H 0.14 2.63 7.67 -2.39 -0.02 2.61 16 23 C 0.29 3.93 5.67 71.98 0.41 4.33 16 24 F -0.22 -4.29 17.29 44.97 0.78 -3.51 16 25 F -0.21 -3.04 15.91 44.97 0.72 -2.33 16 26 C 0.10 3.87 6.49 86.85 0.56 4.43 16 27 H 0.00 -0.06 7.34 -2.39 -0.02 -0.08 16 28 H 0.02 0.95 7.40 -2.39 -0.02 0.93 16 29 H 0.04 1.52 6.17 -2.38 -0.01 1.51 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.07 2.16 6.17 -2.39 -0.01 2.15 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 35 H 0.14 1.46 7.22 -2.38 -0.02 1.44 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.16 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.04 1.90 8.04 -2.38 -0.02 1.88 16 39 H 0.05 2.03 7.20 -2.38 -0.02 2.02 16 Total: -1.00 -71.55 326.36 4.96 -66.59 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.06 Total: 7.69 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 4.95 Total: 17.50 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.52 Total: -108.74 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.49 Total: -5.84 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -71.55 4.96 -66.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971446564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.754 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds