Wall clock time and date at job start Tue Mar 31 2020 03:08:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00092 * 2 1
4 4 H 1.48495 * 109.47260 * 274.44587 * 3 2 1
5 5 H 1.48503 * 109.46832 * 34.44517 * 3 2 1
6 6 H 1.48500 * 109.47150 * 154.44438 * 3 2 1
7 7 C 1.38811 * 120.00199 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00288 * 189.00577 * 7 2 1
9 9 N 1.36935 * 120.00101 * 9.01498 * 7 2 1
10 10 C 1.48152 * 127.83651 * 15.56093 * 9 7 2
11 11 C 1.54397 * 104.61400 * 140.39907 * 10 9 7
12 12 H 1.09002 * 118.18202 * 244.19749 * 11 10 9
13 13 C 1.53001 * 118.11728 * 87.19677 * 11 10 9
14 14 H 1.09000 * 117.44786 * 16.05754 * 13 11 10
15 15 C 1.53006 * 117.43935 * 160.81040 * 13 11 10
16 16 N 1.46501 * 109.46889 * 184.99672 * 15 13 11
17 17 C 1.34776 * 119.99854 * 179.97438 * 16 15 13
18 18 O 1.21523 * 119.99837 * 359.97438 * 17 16 15
19 19 C 1.48147 * 119.99993 * 179.72295 * 17 16 15
20 20 C 1.39445 * 120.09565 * 179.97438 * 19 17 16
21 21 N 1.32080 * 119.86870 * 179.75625 * 20 19 17
22 22 C 1.32135 * 120.07314 * 0.49741 * 21 20 19
23 23 C 1.38725 * 120.19843 * 359.75347 * 22 21 20
24 24 N 1.31802 * 120.12254 * 0.02562 * 23 22 21
25 25 C 1.53002 * 60.55149 * 268.45610 * 13 11 10
26 26 H 1.09006 * 119.54037 * 248.22929 * 25 13 11
27 27 C 1.48144 * 127.84074 * 195.54565 * 9 7 2
28 28 H 0.97001 * 120.00143 * 359.97438 * 1 2 3
29 29 H 1.08997 * 110.40657 * 21.61692 * 10 9 7
30 30 H 1.09001 * 110.40863 * 259.18504 * 10 9 7
31 31 H 1.08997 * 109.47044 * 64.99371 * 15 13 11
32 32 H 1.09000 * 109.46714 * 304.99472 * 15 13 11
33 33 H 0.96996 * 119.99848 * 359.97438 * 16 15 13
34 34 H 1.07999 * 120.06570 * 359.97438 * 20 19 17
35 35 H 1.08001 * 119.90198 * 179.73649 * 22 21 20
36 36 H 1.07996 * 119.94366 * 179.97438 * 23 22 21
37 37 H 1.09005 * 110.40819 * 100.81796 * 27 9 7
38 38 H 1.08998 * 110.50935 * 338.43686 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4037 2.1007 -1.3958
5 1 1.4977 2.6237 0.7919
6 1 3.5916 1.4148 0.6040
7 6 2.0103 -1.2021 0.0005
8 1 3.0803 -1.2078 0.1469
9 7 1.3383 -2.3808 -0.1848
10 6 -0.0351 -2.5716 -0.7063
11 6 0.0618 -3.8183 -1.6120
12 1 -0.1269 -3.6957 -2.6785
13 6 -0.1194 -5.1939 -0.9671
14 1 -0.5670 -5.2281 0.0262
15 6 -0.4696 -6.3640 -1.8886
16 7 -0.7184 -7.5623 -1.0833
17 6 -1.0467 -8.7226 -1.6853
18 8 -1.1366 -8.7747 -2.8960
19 6 -1.2923 -9.9358 -0.8713
20 6 -1.6326 -11.1372 -1.4920
21 7 -1.8459 -12.2173 -0.7623
22 6 -1.7468 -12.1573 0.5539
23 6 -1.4136 -10.9623 1.1749
24 7 -1.1948 -9.8808 0.4540
25 6 1.2848 -4.5981 -1.0865
26 1 2.0075 -5.0566 -1.7617
27 6 1.8200 -3.7545 0.0905
28 1 -0.4850 0.8400 0.0004
29 1 -0.3452 -1.7030 -1.2872
30 1 -0.7315 -2.7502 0.1131
31 1 0.3601 -6.5504 -2.5705
32 1 -1.3636 -6.1197 -2.4623
33 1 -0.6470 -7.5205 -0.1169
34 1 -1.7180 -11.1853 -2.5676
35 1 -1.9260 -13.0411 1.1482
36 1 -1.3342 -10.9178 2.2510
37 1 1.4133 -4.1178 1.0343
38 1 2.9094 -3.7800 0.1121
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000977811082.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:08:06
Heat of formation + Delta-G solvation = 76.579808 kcal
Electronic energy + Delta-G solvation = -21386.619498 eV
Core-core repulsion = 18038.274084 eV
Total energy + Delta-G solvation = -3348.345414 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 288.133 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.62326 -39.62214 -38.68471 -35.25670 -34.70920 -33.32461 -32.15008 -30.82717
-27.74461 -27.13237 -25.78784 -25.05997 -24.36222 -21.30580 -21.11898 -20.03946
-19.28158 -18.35581 -17.98413 -17.20357 -16.82072 -15.89564 -15.85057 -15.47284
-14.82429 -14.77090 -14.40576 -14.01019 -13.65738 -13.25778 -13.11948 -12.79153
-12.67807 -12.16227 -11.86237 -11.75358 -11.27934 -11.11928 -10.85583 -10.68774
-10.63644 -10.30752 -10.13163 -9.92525 -9.75921 -9.60820 -9.44955 -9.15717
-8.99333 -8.65204 -6.87970 -5.80906 -3.15304 -0.04152 0.57603 2.43275
2.78610 3.37505 3.38389 3.42950 3.44957 3.55966 3.73146 3.97645
4.12482 4.41416 4.46088 4.68138 4.77480 4.86928 5.05695 5.26667
5.37479 5.43107 5.48450 5.73695 5.79954 5.84936 5.88745 5.94978
6.21123 6.24501 6.53489 6.63383 6.65316 6.69518 6.90795 7.11198
7.34329 7.37973 7.52214 7.70800 7.92706 8.19890 9.09987 9.72708
10.49721 11.33416
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.043043 B = 0.002598 C = 0.002530
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 650.351867 B =10775.212073 C =11065.357999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C -0.006 4.006
3 Si 0.913 3.087
4 H -0.288 1.288
5 H -0.290 1.290
6 H -0.280 1.280
7 C -0.227 4.227
8 H 0.077 0.923
9 N -0.594 5.594
10 C 0.183 3.817
11 C -0.160 4.160
12 H 0.104 0.896
13 C -0.151 4.151
14 H 0.104 0.896
15 C 0.152 3.848
16 N -0.699 5.699
17 C 0.571 3.429
18 O -0.531 6.531
19 C 0.033 3.967
20 C 0.108 3.892
21 N -0.441 5.441
22 C 0.070 3.930
23 C 0.051 3.949
24 N -0.411 5.411
25 C -0.171 4.171
26 H 0.103 0.897
27 C 0.154 3.846
28 H 0.254 0.746
29 H 0.091 0.909
30 H 0.024 0.976
31 H 0.072 0.928
32 H 0.075 0.925
33 H 0.412 0.588
34 H 0.184 0.816
35 H 0.177 0.823
36 H 0.179 0.821
37 H 0.024 0.976
38 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.815 -22.344 1.234 22.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.203 4.203
3 Si 0.743 3.257
4 H -0.215 1.215
5 H -0.217 1.217
6 H -0.205 1.205
7 C -0.355 4.355
8 H 0.095 0.905
9 N -0.318 5.318
10 C 0.058 3.942
11 C -0.181 4.181
12 H 0.122 0.878
13 C -0.170 4.170
14 H 0.122 0.878
15 C 0.029 3.971
16 N -0.349 5.349
17 C 0.354 3.646
18 O -0.408 6.408
19 C -0.108 4.108
20 C -0.051 4.051
21 N -0.155 5.155
22 C -0.091 4.091
23 C -0.111 4.111
24 N -0.129 5.129
25 C -0.191 4.191
26 H 0.121 0.879
27 C 0.027 3.973
28 H 0.064 0.936
29 H 0.109 0.891
30 H 0.042 0.958
31 H 0.090 0.910
32 H 0.093 0.907
33 H 0.249 0.751
34 H 0.201 0.799
35 H 0.194 0.806
36 H 0.196 0.804
37 H 0.042 0.958
38 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -3.868 -22.013 0.357 22.353
hybrid contribution 0.444 0.766 0.579 1.058
sum -3.424 -21.247 0.935 21.541
Atomic orbital electron populations
1.69896 1.05058 1.25406 1.55847 1.24900 0.95657 0.97987 1.01774
0.86087 0.78716 0.83292 0.77572 1.21518 1.21670 1.20502 1.19018
0.90815 0.82359 1.43313 0.90548 1.45207 1.13244 1.00006 1.73325
1.21077 0.86836 0.92721 0.93608 1.24243 1.02064 0.91646 1.00117
0.87804 1.22526 1.00517 0.93689 1.00318 0.87782 1.20993 1.01423
0.81907 0.92738 1.45904 1.68131 1.09045 1.11860 1.17622 0.77846
0.82396 0.86715 1.90818 1.52202 1.84750 1.12991 1.22266 1.01092
0.96232 0.91260 1.23870 0.91486 0.87339 1.02419 1.68640 1.10707
1.29262 1.06861 1.24139 0.93729 0.99436 0.91793 1.23900 0.96224
0.88938 1.02039 1.68370 1.08329 1.30599 1.05596 1.24000 0.89797
1.02570 1.02724 0.87882 1.21139 0.97149 0.85995 0.92981 0.93556
0.89123 0.95839 0.90988 0.90650 0.75119 0.79946 0.80629 0.80396
0.95805 0.93178
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.70 10.86 55.49 0.60 -26.10 16
2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16
3 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16
4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16
8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16
9 N -0.59 -15.14 3.38 -168.85 -0.57 -15.71 16
10 C 0.18 4.35 5.70 -2.40 -0.01 4.34 16
11 C -0.16 -2.97 6.85 -89.22 -0.61 -3.59 16
12 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16
13 C -0.15 -2.30 5.39 -90.62 -0.49 -2.78 16
14 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16
15 C 0.15 2.02 5.95 -4.04 -0.02 2.00 16
16 N -0.70 -8.51 5.55 -61.15 -0.34 -8.85 16
17 C 0.57 7.32 7.81 -12.19 -0.10 7.22 16
18 O -0.53 -8.13 16.35 5.35 0.09 -8.04 16
19 C 0.03 0.35 6.75 -82.84 -0.56 -0.21 16
20 C 0.11 1.06 10.77 -17.00 -0.18 0.88 16
21 N -0.44 -3.97 10.49 -12.71 -0.13 -4.10 16
22 C 0.07 0.43 11.23 -17.24 -0.19 0.24 16
23 C 0.05 0.33 11.22 -17.38 -0.20 0.14 16
24 N -0.41 -3.94 9.71 -9.62 -0.09 -4.03 16
25 C -0.17 -2.98 6.74 -89.22 -0.60 -3.58 16
26 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16
27 C 0.15 3.18 7.04 -2.41 -0.02 3.16 16
28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
29 H 0.09 2.41 6.51 -51.93 -0.34 2.08 16
30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16
32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.41 4.57 7.75 -40.82 -0.32 4.25 16
34 H 0.18 1.63 7.65 -52.49 -0.40 1.23 16
35 H 0.18 0.42 8.06 -52.49 -0.42 -0.01 16
36 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16
37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
LS Contribution 327.43 15.07 4.93 4.93
Total: -1.00 -32.70 327.43 -8.58 -41.28
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: -4.81 Total: 2.68 kcal
Atomic # 6 Polarization: 4.33 SS G_CDS: -3.23 Total: 1.10 kcal
Atomic # 7 Polarization: -58.26 SS G_CDS: -0.53 Total: -58.80 kcal
Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -32.70 -8.58 -41.28 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977811082.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.863 kcal
(2) G-P(sol) polarization free energy of solvation -32.700 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds