Wall clock time and date at job start Tue Mar 31 2020 03:08:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00092 * 2 1
4 4 H 1.48495 * 109.47260 * 274.44587 * 3 2 1
5 5 H 1.48503 * 109.46832 * 34.44517 * 3 2 1
6 6 H 1.48500 * 109.47150 * 154.44438 * 3 2 1
7 7 C 1.38811 * 120.00199 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00288 * 189.00577 * 7 2 1
9 9 N 1.36935 * 120.00101 * 9.01498 * 7 2 1
10 10 C 1.48152 * 127.83651 * 15.56093 * 9 7 2
11 11 C 1.54397 * 104.61400 * 140.39907 * 10 9 7
12 12 H 1.09002 * 118.18202 * 244.19749 * 11 10 9
13 13 C 1.53001 * 118.11728 * 87.19677 * 11 10 9
14 14 H 1.09000 * 117.44786 * 16.05754 * 13 11 10
15 15 C 1.53006 * 117.43935 * 160.81040 * 13 11 10
16 16 N 1.46501 * 109.46889 * 184.99672 * 15 13 11
17 17 C 1.34776 * 119.99854 * 179.97438 * 16 15 13
18 18 O 1.21523 * 119.99837 * 359.97438 * 17 16 15
19 19 C 1.48147 * 119.99993 * 179.72295 * 17 16 15
20 20 C 1.39445 * 120.09565 * 179.97438 * 19 17 16
21 21 N 1.32080 * 119.86870 * 179.75625 * 20 19 17
22 22 C 1.32135 * 120.07314 * 0.49741 * 21 20 19
23 23 C 1.38725 * 120.19843 * 359.75347 * 22 21 20
24 24 N 1.31802 * 120.12254 * 0.02562 * 23 22 21
25 25 C 1.53002 * 60.55149 * 268.45610 * 13 11 10
26 26 H 1.09006 * 119.54037 * 248.22929 * 25 13 11
27 27 C 1.48144 * 127.84074 * 195.54565 * 9 7 2
28 28 H 0.97001 * 120.00143 * 359.97438 * 1 2 3
29 29 H 1.08997 * 110.40657 * 21.61692 * 10 9 7
30 30 H 1.09001 * 110.40863 * 259.18504 * 10 9 7
31 31 H 1.08997 * 109.47044 * 64.99371 * 15 13 11
32 32 H 1.09000 * 109.46714 * 304.99472 * 15 13 11
33 33 H 0.96996 * 119.99848 * 359.97438 * 16 15 13
34 34 H 1.07999 * 120.06570 * 359.97438 * 20 19 17
35 35 H 1.08001 * 119.90198 * 179.73649 * 22 21 20
36 36 H 1.07996 * 119.94366 * 179.97438 * 23 22 21
37 37 H 1.09005 * 110.40819 * 100.81796 * 27 9 7
38 38 H 1.08998 * 110.50935 * 338.43686 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4037 2.1007 -1.3958
5 1 1.4977 2.6237 0.7919
6 1 3.5916 1.4148 0.6040
7 6 2.0103 -1.2021 0.0005
8 1 3.0803 -1.2078 0.1469
9 7 1.3383 -2.3808 -0.1848
10 6 -0.0351 -2.5716 -0.7063
11 6 0.0618 -3.8183 -1.6120
12 1 -0.1269 -3.6957 -2.6785
13 6 -0.1194 -5.1939 -0.9671
14 1 -0.5670 -5.2281 0.0262
15 6 -0.4696 -6.3640 -1.8886
16 7 -0.7184 -7.5623 -1.0833
17 6 -1.0467 -8.7226 -1.6853
18 8 -1.1366 -8.7747 -2.8960
19 6 -1.2923 -9.9358 -0.8713
20 6 -1.6326 -11.1372 -1.4920
21 7 -1.8459 -12.2173 -0.7623
22 6 -1.7468 -12.1573 0.5539
23 6 -1.4136 -10.9623 1.1749
24 7 -1.1948 -9.8808 0.4540
25 6 1.2848 -4.5981 -1.0865
26 1 2.0075 -5.0566 -1.7617
27 6 1.8200 -3.7545 0.0905
28 1 -0.4850 0.8400 0.0004
29 1 -0.3452 -1.7030 -1.2872
30 1 -0.7315 -2.7502 0.1131
31 1 0.3601 -6.5504 -2.5705
32 1 -1.3636 -6.1197 -2.4623
33 1 -0.6470 -7.5205 -0.1169
34 1 -1.7180 -11.1853 -2.5676
35 1 -1.9260 -13.0411 1.1482
36 1 -1.3342 -10.9178 2.2510
37 1 1.4133 -4.1178 1.0343
38 1 2.9094 -3.7800 0.1121
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000977811082.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:08:06
Heat of formation + Delta-G solvation = 53.260832 kcal
Electronic energy + Delta-G solvation = -21387.630685 eV
Core-core repulsion = 18038.274084 eV
Total energy + Delta-G solvation = -3349.356600 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 288.133 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.28665 -40.77006 -40.04241 -36.46197 -35.57401 -34.88359 -32.94668 -32.52905
-29.14004 -28.84156 -27.11198 -25.96203 -25.30573 -22.94032 -22.14640 -21.43490
-20.84851 -19.26601 -18.81898 -18.67020 -17.77897 -16.99869 -16.78168 -16.71839
-16.25161 -15.76150 -15.63103 -15.21358 -15.06015 -14.63532 -14.47562 -14.14933
-13.85453 -13.37598 -13.18825 -12.89702 -12.79788 -12.73957 -12.41248 -12.31278
-11.98681 -11.93842 -11.78128 -11.62559 -10.95869 -10.72514 -10.61042 -10.55276
-10.20526 -10.09734 -8.91085 -7.92009 -5.28373 -0.69105 -0.02082 1.46276
1.48060 1.57231 1.59025 1.85516 2.47378 2.68712 2.72205 2.91288
3.18771 3.25753 3.38070 3.59506 3.69067 3.76050 3.85014 4.08650
4.18733 4.26290 4.32413 4.42263 4.53670 4.55780 4.62570 4.70416
4.93277 5.02097 5.14168 5.26132 5.33467 5.37860 5.44856 5.53076
5.66533 6.02632 6.17919 6.32735 6.62699 6.98118 7.00967 7.68082
8.46421 9.21767
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.043043 B = 0.002598 C = 0.002530
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 650.351867 B =10775.212073 C =11065.357999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.948 5.948
2 C -0.064 4.064
3 Si 0.980 3.020
4 H -0.287 1.287
5 H -0.294 1.294
6 H -0.266 1.266
7 C -0.241 4.241
8 H 0.081 0.919
9 N -0.620 5.620
10 C 0.188 3.812
11 C -0.173 4.173
12 H 0.116 0.884
13 C -0.112 4.112
14 H 0.107 0.893
15 C 0.161 3.839
16 N -0.695 5.695
17 C 0.572 3.428
18 O -0.563 6.563
19 C 0.010 3.990
20 C 0.101 3.899
21 N -0.461 5.461
22 C 0.086 3.914
23 C 0.058 3.942
24 N -0.428 5.428
25 C -0.161 4.161
26 H 0.126 0.874
27 C 0.148 3.852
28 H 0.250 0.750
29 H 0.053 0.947
30 H 0.002 0.998
31 H 0.075 0.925
32 H 0.076 0.924
33 H 0.419 0.581
34 H 0.180 0.820
35 H 0.219 0.781
36 H 0.218 0.782
37 H 0.027 0.973
38 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.221 -24.612 2.243 24.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.595 5.595
2 C -0.257 4.257
3 Si 0.808 3.192
4 H -0.214 1.214
5 H -0.220 1.220
6 H -0.191 1.191
7 C -0.369 4.369
8 H 0.098 0.902
9 N -0.345 5.345
10 C 0.063 3.937
11 C -0.193 4.193
12 H 0.134 0.866
13 C -0.131 4.131
14 H 0.125 0.875
15 C 0.038 3.962
16 N -0.345 5.345
17 C 0.357 3.643
18 O -0.442 6.442
19 C -0.129 4.129
20 C -0.057 4.057
21 N -0.175 5.175
22 C -0.076 4.076
23 C -0.106 4.106
24 N -0.146 5.146
25 C -0.180 4.180
26 H 0.143 0.857
27 C 0.023 3.977
28 H 0.059 0.941
29 H 0.072 0.928
30 H 0.020 0.980
31 H 0.094 0.906
32 H 0.095 0.905
33 H 0.256 0.744
34 H 0.197 0.803
35 H 0.236 0.764
36 H 0.235 0.765
37 H 0.045 0.955
38 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.253 -24.301 1.352 24.555
hybrid contribution 0.235 1.325 0.418 1.409
sum -3.019 -22.976 1.770 23.241
Atomic orbital electron populations
1.70092 1.06514 1.25719 1.57221 1.25746 0.96521 1.01303 1.02147
0.85040 0.77891 0.78913 0.77347 1.21363 1.22025 1.19065 1.19400
0.91339 0.83664 1.42529 0.90152 1.45529 1.13782 1.01221 1.73933
1.20812 0.85989 0.93751 0.93195 1.23929 1.04367 0.91109 0.99932
0.86593 1.22398 0.98274 0.92165 1.00275 0.87494 1.20812 1.01612
0.81547 0.92234 1.45790 1.68060 1.08614 1.12064 1.17910 0.76930
0.82946 0.86531 1.90792 1.53649 1.85348 1.14408 1.21885 1.03632
0.95481 0.91869 1.23834 0.91762 0.87481 1.02612 1.68699 1.11581
1.28865 1.08386 1.24903 0.90894 1.00841 0.90971 1.24623 0.94334
0.88038 1.03596 1.68340 1.08988 1.32238 1.05062 1.23937 0.90556
1.02188 1.01330 0.85656 1.21293 0.97720 0.84322 0.94379 0.94118
0.92812 0.98022 0.90640 0.90548 0.74364 0.80269 0.76425 0.76515
0.95532 0.92470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.12 10.86 21.65 0.24 -56.88 16
2 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16
3 Si 0.98 45.57 29.56 68.60 2.03 47.60 16
4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16
5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16
6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
7 C -0.24 -13.54 10.35 84.03 0.87 -12.67 16
8 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16
9 N -0.62 -32.08 3.38 -688.12 -2.33 -34.40 16
10 C 0.19 9.22 5.70 86.54 0.49 9.71 16
11 C -0.17 -6.35 6.85 -9.89 -0.07 -6.42 16
12 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16
13 C -0.11 -3.22 5.39 -10.79 -0.06 -3.28 16
14 H 0.11 3.08 8.04 -2.39 -0.02 3.06 16
15 C 0.16 4.01 5.95 86.38 0.51 4.52 16
16 N -0.69 -15.94 5.55 -465.67 -2.58 -18.53 16
17 C 0.57 14.29 7.81 86.88 0.68 14.97 16
18 O -0.56 -17.19 16.35 -3.79 -0.06 -17.25 16
19 C 0.01 0.21 6.75 41.89 0.28 0.50 16
20 C 0.10 1.92 10.77 84.95 0.92 2.83 16
21 N -0.46 -7.40 10.49 -194.12 -2.04 -9.43 16
22 C 0.09 0.75 11.23 84.76 0.95 1.70 16
23 C 0.06 0.54 11.22 84.81 0.95 1.49 16
24 N -0.43 -7.29 9.71 -184.34 -1.79 -9.08 16
25 C -0.16 -5.32 6.74 -9.89 -0.07 -5.38 16
26 H 0.13 3.66 8.12 -2.38 -0.02 3.64 16
27 C 0.15 6.02 7.04 86.54 0.61 6.63 16
28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16
29 H 0.05 3.00 6.51 -2.39 -0.02 2.99 16
30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16
31 H 0.08 1.89 7.94 -2.39 -0.02 1.87 16
32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
33 H 0.42 8.55 7.75 -92.71 -0.72 7.83 16
34 H 0.18 3.29 7.65 -2.91 -0.02 3.27 16
35 H 0.22 -0.09 8.06 -2.91 -0.02 -0.12 16
36 H 0.22 0.18 8.06 -2.91 -0.02 0.15 16
37 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16
38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
Total: -1.00 -73.26 327.43 0.37 -72.90
By element:
Atomic # 1 Polarization: 13.27 SS G_CDS: 0.37 Total: 13.64 kcal
Atomic # 6 Polarization: 4.92 SS G_CDS: 6.53 Total: 11.45 kcal
Atomic # 7 Polarization: -119.83 SS G_CDS: -8.50 Total: -128.33 kcal
Atomic # 8 Polarization: -17.19 SS G_CDS: -0.06 Total: -17.25 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal
Total: -73.26 0.37 -72.90 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977811082.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.157 kcal
(2) G-P(sol) polarization free energy of solvation -73.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.261 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds