Wall clock time and date at job start Tue Mar 31 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99662 * 2 1 4 4 H 1.48494 * 109.47577 * 270.00098 * 3 2 1 5 5 H 1.48503 * 109.46950 * 30.00503 * 3 2 1 6 6 H 1.48498 * 109.46965 * 149.99830 * 3 2 1 7 7 C 1.38808 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00029 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99690 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99752 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.44337 * 34.29806 * 10 9 7 12 12 C 1.55943 * 110.60386 * 271.65871 * 10 9 7 13 13 C 1.56404 * 105.78715 * 233.73291 * 12 10 9 14 14 C 1.50990 * 101.59331 * 334.98288 * 13 12 10 15 15 H 1.08998 * 110.05493 * 290.64851 * 14 13 12 16 16 C 1.50346 * 125.57874 * 156.03563 * 14 13 12 17 17 N 1.49217 * 104.86114 * 215.66097 * 16 14 13 18 18 C 1.34775 * 126.06029 * 187.10045 * 17 16 14 19 19 O 1.21612 * 120.00219 * 179.97438 * 18 17 16 20 20 C 1.43198 * 119.99795 * 359.97397 * 18 17 16 21 21 C 9.83160 * 109.40895 * 23.12838 * 4 1 2 22 22 C 9.34386 * 166.39462 * 294.28393 * 9 1 2 23 23 C 1.52991 * 117.49858 * 106.58860 * 22 21 20 24 24 C 1.52995 * 117.49676 * 37.92595 * 22 21 20 25 25 C 1.48968 * 107.54655 * 6.48633 * 17 16 14 26 26 C 1.50295 * 110.49495 * 156.85928 * 10 9 7 27 27 H 1.09006 * 110.00455 * 38.30497 * 26 10 9 28 28 H 0.96998 * 120.00200 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00353 * 359.97438 * 9 7 2 30 30 H 1.09001 * 110.18616 * 352.81384 * 12 10 9 31 31 H 1.09000 * 110.18535 * 114.65019 * 12 10 9 32 32 H 1.09006 * 110.99947 * 216.91090 * 13 12 10 33 33 H 1.08998 * 111.03733 * 93.07982 * 13 12 10 34 34 H 1.09000 * 110.36256 * 334.50692 * 16 14 13 35 35 H 1.08998 * 110.36100 * 96.81120 * 16 14 13 36 36 H 1.09004 * 115.54808 * 252.25794 * 22 21 20 37 37 H 1.09005 * 117.49935 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49858 * 145.01993 * 23 22 21 39 39 H 1.09001 * 117.49637 * 214.97637 * 24 22 21 40 40 H 1.08996 * 117.50207 * 359.97438 * 24 22 21 41 41 H 1.08999 * 110.93409 * 267.67544 * 25 17 16 42 42 H 1.09007 * 110.42398 * 144.30102 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 -0.0011 11 1 3.5721 -3.2217 -0.5777 12 6 4.3495 -2.9687 1.4575 13 6 5.8893 -3.2149 1.5779 14 6 6.2695 -3.4685 0.1388 15 1 5.8600 -4.4224 -0.1935 16 6 7.6377 -3.2710 -0.4524 17 7 7.3881 -2.7785 -1.8386 18 6 8.3203 -2.5913 -2.7939 19 8 7.9925 -2.1838 -3.8918 20 6 9.6967 -2.8722 -2.5159 21 6 10.8242 -3.1049 -2.2890 22 6 12.2392 -3.3935 -2.0035 23 6 13.2428 -3.2027 -3.1424 24 6 12.8628 -4.6132 -2.6848 25 6 5.9229 -2.5473 -1.9762 26 6 5.4967 -2.2785 -0.5537 27 1 5.9037 -1.3252 -0.2165 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3620 0.0004 30 1 4.0333 -2.2077 2.1709 31 1 3.8054 -3.8971 1.6311 32 1 6.0982 -4.0877 2.1967 33 1 6.3975 -2.3325 1.9666 34 1 8.1943 -2.5284 0.1194 35 1 8.1801 -4.2161 -0.4775 36 1 12.5730 -3.1557 -0.9935 37 1 12.8554 -2.8631 -4.1030 38 1 14.2370 -2.8398 -2.8816 39 1 13.6073 -5.1775 -2.1232 40 1 12.2253 -5.2022 -3.3441 41 1 5.4242 -3.4330 -2.3698 42 1 5.7324 -1.6802 -2.6087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026265661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:24 Heat of formation + Delta-G solvation = 77.975374 kcal Electronic energy + Delta-G solvation = -22059.867980 eV Core-core repulsion = 18815.123426 eV Total energy + Delta-G solvation = -3244.744554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69948 -38.75739 -37.97925 -35.52443 -33.54015 -32.95448 -31.20790 -29.78837 -28.84170 -25.91639 -25.04480 -23.35136 -22.92049 -22.59471 -20.96950 -20.40421 -19.31166 -18.09545 -17.52866 -16.95116 -16.54909 -15.56483 -15.45621 -15.07372 -14.75596 -14.31671 -13.92799 -13.64762 -13.22910 -12.95258 -12.67135 -12.50887 -12.40698 -12.07928 -12.02697 -11.97984 -11.68721 -11.58686 -11.22319 -10.92110 -10.83759 -10.63605 -10.45209 -10.40447 -10.26210 -10.07542 -10.04883 -9.83693 -9.58655 -8.95823 -8.79449 -7.30024 -5.78728 -3.14926 1.33620 1.96756 2.71015 3.14561 3.36988 3.40539 3.45607 3.63670 3.68359 4.04299 4.28681 4.45757 4.50892 4.57886 4.71383 4.86955 5.09486 5.11780 5.13454 5.22865 5.32293 5.34767 5.42893 5.50094 5.53143 5.57895 5.58572 5.66930 5.76400 5.84028 5.92742 5.99462 6.06159 6.14484 6.20837 6.32112 6.49885 6.67685 6.91182 6.97912 7.30475 7.94826 7.97006 8.40420 9.18023 9.90688 10.09632 11.39427 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003234 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.220897 B = 8654.701721 C = 9178.981291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.202 3.798 11 H 0.065 0.935 12 C -0.142 4.142 13 C -0.098 4.098 14 C -0.128 4.128 15 H 0.086 0.914 16 C 0.121 3.879 17 N -0.614 5.614 18 C 0.646 3.354 19 O -0.525 6.525 20 C -0.204 4.204 21 C -0.062 4.062 22 C -0.064 4.064 23 C -0.162 4.162 24 C -0.159 4.159 25 C 0.129 3.871 26 C -0.123 4.123 27 H 0.081 0.919 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.460 -10.238 0.339 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.092 3.908 11 H 0.083 0.917 12 C -0.183 4.183 13 C -0.136 4.136 14 C -0.148 4.148 15 H 0.104 0.896 16 C -0.001 4.001 17 N -0.348 5.348 18 C 0.435 3.565 19 O -0.403 6.403 20 C -0.206 4.206 21 C -0.065 4.065 22 C -0.081 4.081 23 C -0.198 4.198 24 C -0.196 4.196 25 C 0.009 3.991 26 C -0.143 4.143 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 25.043 -10.046 -0.344 26.985 hybrid contribution 0.560 1.274 0.145 1.400 sum 25.603 -8.772 -0.199 27.065 Atomic orbital electron populations 1.69699 1.05106 1.25858 1.57355 1.24672 0.95213 0.97195 1.01919 0.86581 0.79156 0.85076 0.77876 1.21009 1.21767 1.20376 1.19069 0.80502 0.94719 1.43182 0.89101 1.42856 1.04098 1.01767 1.89905 1.20053 0.88265 0.89649 0.92874 0.91665 1.23756 0.92913 1.01406 1.00217 1.21760 0.97512 1.00988 0.93324 1.22198 0.94415 1.00128 0.98031 0.89613 1.21311 0.97581 0.99302 0.81899 1.49483 1.07882 1.65002 1.12389 1.14201 0.80838 0.78143 0.83334 1.90876 1.81015 1.46098 1.22302 1.20571 0.93336 1.04739 1.02002 1.21263 0.92524 0.94634 0.98064 1.18904 0.84410 1.05507 0.99312 1.23136 0.99022 0.99438 0.98246 1.23114 1.02728 0.90832 1.02948 1.21465 0.77711 1.02348 0.97587 1.22569 0.98822 0.98840 0.94097 0.90041 0.93034 0.80535 0.90672 0.92105 0.91867 0.91635 0.91098 0.90967 0.84636 0.88003 0.87358 0.87321 0.88092 0.90372 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.04 27.74 -169.99 -4.71 17.33 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.24 -6.71 10.45 -15.06 -0.16 -6.86 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.87 4.92 -53.21 -0.26 -17.14 16 10 C 0.20 3.58 3.40 -67.70 -0.23 3.35 16 11 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.14 -2.19 6.74 -23.33 -0.16 -2.34 16 13 C -0.10 -1.14 6.72 -25.91 -0.17 -1.32 16 14 C -0.13 -1.50 2.75 -90.27 -0.25 -1.74 16 15 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.12 1.34 6.37 -3.86 -0.02 1.31 16 17 N -0.61 -8.61 3.41 -175.06 -0.60 -9.20 16 18 C 0.65 10.21 7.72 -14.34 -0.11 10.09 16 19 O -0.53 -10.15 17.42 5.27 0.09 -10.06 16 20 C -0.20 -2.74 12.82 -38.84 -0.50 -3.24 16 21 C -0.06 -0.68 13.47 -37.13 -0.50 -1.18 16 22 C -0.06 -0.44 6.21 -93.41 -0.58 -1.03 16 23 C -0.16 -0.92 10.21 -26.70 -0.27 -1.19 16 24 C -0.16 -0.86 10.21 -26.70 -0.27 -1.13 16 25 C 0.13 1.92 6.75 -3.72 -0.03 1.90 16 26 C -0.12 -1.83 2.45 -90.33 -0.22 -2.05 16 27 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.36 8.19 5.52 -40.82 -0.23 7.96 16 30 H 0.07 1.31 7.98 -51.93 -0.41 0.90 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.41 8.08 -51.92 -0.42 0.99 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -33.13 351.62 -9.53 -42.66 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.56 Total: 4.73 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.57 Total: -5.35 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.08 Total: -54.61 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.13 -9.53 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026265661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.634 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds