Wall clock time and date at job start Tue Mar 31 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99662 * 2 1 4 4 H 1.48494 * 109.47577 * 270.00098 * 3 2 1 5 5 H 1.48503 * 109.46950 * 30.00503 * 3 2 1 6 6 H 1.48498 * 109.46965 * 149.99830 * 3 2 1 7 7 C 1.38808 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00029 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99690 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99752 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.44337 * 34.29806 * 10 9 7 12 12 C 1.55943 * 110.60386 * 271.65871 * 10 9 7 13 13 C 1.56404 * 105.78715 * 233.73291 * 12 10 9 14 14 C 1.50990 * 101.59331 * 334.98288 * 13 12 10 15 15 H 1.08998 * 110.05493 * 290.64851 * 14 13 12 16 16 C 1.50346 * 125.57874 * 156.03563 * 14 13 12 17 17 N 1.49217 * 104.86114 * 215.66097 * 16 14 13 18 18 C 1.34775 * 126.06029 * 187.10045 * 17 16 14 19 19 O 1.21612 * 120.00219 * 179.97438 * 18 17 16 20 20 C 1.43198 * 119.99795 * 359.97397 * 18 17 16 21 21 C 9.83160 * 109.40895 * 23.12838 * 4 1 2 22 22 C 9.34386 * 166.39462 * 294.28393 * 9 1 2 23 23 C 1.52991 * 117.49858 * 106.58860 * 22 21 20 24 24 C 1.52995 * 117.49676 * 37.92595 * 22 21 20 25 25 C 1.48968 * 107.54655 * 6.48633 * 17 16 14 26 26 C 1.50295 * 110.49495 * 156.85928 * 10 9 7 27 27 H 1.09006 * 110.00455 * 38.30497 * 26 10 9 28 28 H 0.96998 * 120.00200 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00353 * 359.97438 * 9 7 2 30 30 H 1.09001 * 110.18616 * 352.81384 * 12 10 9 31 31 H 1.09000 * 110.18535 * 114.65019 * 12 10 9 32 32 H 1.09006 * 110.99947 * 216.91090 * 13 12 10 33 33 H 1.08998 * 111.03733 * 93.07982 * 13 12 10 34 34 H 1.09000 * 110.36256 * 334.50692 * 16 14 13 35 35 H 1.08998 * 110.36100 * 96.81120 * 16 14 13 36 36 H 1.09004 * 115.54808 * 252.25794 * 22 21 20 37 37 H 1.09005 * 117.49935 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49858 * 145.01993 * 23 22 21 39 39 H 1.09001 * 117.49637 * 214.97637 * 24 22 21 40 40 H 1.08996 * 117.50207 * 359.97438 * 24 22 21 41 41 H 1.08999 * 110.93409 * 267.67544 * 25 17 16 42 42 H 1.09007 * 110.42398 * 144.30102 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 -0.0011 11 1 3.5721 -3.2217 -0.5777 12 6 4.3495 -2.9687 1.4575 13 6 5.8893 -3.2149 1.5779 14 6 6.2695 -3.4685 0.1388 15 1 5.8600 -4.4224 -0.1935 16 6 7.6377 -3.2710 -0.4524 17 7 7.3881 -2.7785 -1.8386 18 6 8.3203 -2.5913 -2.7939 19 8 7.9925 -2.1838 -3.8918 20 6 9.6967 -2.8722 -2.5159 21 6 10.8242 -3.1049 -2.2890 22 6 12.2392 -3.3935 -2.0035 23 6 13.2428 -3.2027 -3.1424 24 6 12.8628 -4.6132 -2.6848 25 6 5.9229 -2.5473 -1.9762 26 6 5.4967 -2.2785 -0.5537 27 1 5.9037 -1.3252 -0.2165 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3620 0.0004 30 1 4.0333 -2.2077 2.1709 31 1 3.8054 -3.8971 1.6311 32 1 6.0982 -4.0877 2.1967 33 1 6.3975 -2.3325 1.9666 34 1 8.1943 -2.5284 0.1194 35 1 8.1801 -4.2161 -0.4775 36 1 12.5730 -3.1557 -0.9935 37 1 12.8554 -2.8631 -4.1030 38 1 14.2370 -2.8398 -2.8816 39 1 13.6073 -5.1775 -2.1232 40 1 12.2253 -5.2022 -3.3441 41 1 5.4242 -3.4330 -2.3698 42 1 5.7324 -1.6802 -2.6087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026265661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:23 Heat of formation + Delta-G solvation = 57.558362 kcal Electronic energy + Delta-G solvation = -22060.753328 eV Core-core repulsion = 18815.123426 eV Total energy + Delta-G solvation = -3245.629902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86005 -39.98570 -38.50062 -36.99485 -35.19258 -33.88113 -33.09363 -30.99759 -30.12973 -27.29875 -26.04212 -24.61167 -24.09718 -23.30645 -21.96861 -21.61304 -20.60318 -19.65776 -18.94777 -17.86595 -17.62147 -16.72661 -16.65286 -16.19080 -15.94347 -15.81399 -15.11296 -15.07891 -14.54734 -14.45069 -13.88573 -13.52327 -13.50183 -13.29655 -13.20594 -13.04380 -12.69437 -12.44227 -12.42303 -12.35174 -12.29356 -12.14583 -11.84117 -11.69214 -11.55424 -11.41045 -11.08804 -11.04862 -10.96728 -10.75636 -9.92884 -9.30076 -8.02223 -5.34706 0.34098 1.05275 1.35786 1.39289 1.45419 1.68863 2.24127 2.47408 2.74565 2.99307 3.06051 3.29712 3.50216 3.71731 3.82179 3.92312 3.95174 4.01372 4.09671 4.22115 4.36335 4.39604 4.43029 4.51044 4.61660 4.64006 4.72196 4.76418 4.85879 4.86373 4.94802 5.00619 5.08463 5.09119 5.20834 5.21207 5.31881 5.49530 5.53314 5.79630 6.09202 6.19736 6.22843 6.78351 7.08158 7.85250 8.02536 9.19339 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003234 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.220897 B = 8654.701721 C = 9178.981291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.949 3.051 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.223 4.223 8 H 0.061 0.939 9 N -0.750 5.750 10 C 0.192 3.808 11 H 0.053 0.947 12 C -0.138 4.138 13 C -0.082 4.082 14 C -0.106 4.106 15 H 0.095 0.905 16 C 0.123 3.877 17 N -0.611 5.611 18 C 0.644 3.356 19 O -0.578 6.578 20 C -0.261 4.261 21 C -0.019 4.019 22 C -0.084 4.084 23 C -0.159 4.159 24 C -0.147 4.147 25 C 0.129 3.871 26 C -0.125 4.125 27 H 0.076 0.924 28 H 0.256 0.744 29 H 0.363 0.637 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.165 0.835 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.863 -11.409 1.957 32.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.777 3.223 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.354 4.354 8 H 0.079 0.921 9 N -0.392 5.392 10 C 0.083 3.917 11 H 0.071 0.929 12 C -0.178 4.178 13 C -0.120 4.120 14 C -0.126 4.126 15 H 0.113 0.887 16 C 0.003 3.997 17 N -0.343 5.343 18 C 0.435 3.565 19 O -0.460 6.460 20 C -0.264 4.264 21 C -0.022 4.022 22 C -0.101 4.101 23 C -0.196 4.196 24 C -0.184 4.184 25 C 0.007 3.993 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.196 0.804 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.182 0.818 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 29.513 -11.271 1.318 31.619 hybrid contribution -0.747 1.486 -0.382 1.707 sum 28.765 -9.785 0.935 30.399 Atomic orbital electron populations 1.69872 1.07012 1.26481 1.60113 1.25439 0.96028 1.00971 1.03126 0.85491 0.78753 0.80261 0.77753 1.21207 1.22311 1.17633 1.19042 0.82587 0.93382 1.40397 0.92117 1.42895 1.02501 1.03802 1.90044 1.20323 0.89141 0.87351 0.94886 0.92859 1.23576 0.96329 1.00788 0.97132 1.21675 0.93981 1.02760 0.93602 1.22166 0.94090 0.98755 0.97566 0.88719 1.21486 0.97359 1.00880 0.79972 1.49497 1.07074 1.64297 1.13432 1.14490 0.81985 0.77284 0.82785 1.90830 1.82054 1.48708 1.24388 1.20219 0.93350 1.07903 1.04898 1.22098 0.92975 0.91669 0.95425 1.19359 0.82170 1.07387 1.01200 1.23256 0.99560 0.99801 0.96952 1.23243 1.02430 0.90511 1.02227 1.21373 0.78881 1.01654 0.97368 1.22326 0.97344 1.00322 0.94496 0.90542 0.93473 0.80355 0.92815 0.91474 0.88712 0.90858 0.89723 0.88441 0.81815 0.89517 0.84818 0.84546 0.89133 0.89841 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.95 46.33 27.74 68.60 1.90 48.23 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 7 C -0.22 -12.54 10.45 84.03 0.88 -11.66 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 9 N -0.75 -34.17 4.92 -322.24 -1.59 -35.76 16 10 C 0.19 6.73 3.40 45.14 0.15 6.88 16 11 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 12 C -0.14 -4.01 6.74 32.80 0.22 -3.79 16 13 C -0.08 -1.61 6.72 31.13 0.21 -1.40 16 14 C -0.11 -2.15 2.75 -10.57 -0.03 -2.18 16 15 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 16 C 0.12 2.34 6.37 85.00 0.54 2.88 16 17 N -0.61 -16.65 3.41 -826.02 -2.82 -19.47 16 18 C 0.64 20.55 7.72 85.49 0.66 21.21 16 19 O -0.58 -23.38 17.42 -4.07 -0.07 -23.45 16 20 C -0.26 -6.79 12.82 30.02 0.38 -6.40 16 21 C -0.02 -0.38 13.47 31.13 0.42 0.04 16 22 C -0.08 -0.86 6.21 -12.60 -0.08 -0.94 16 23 C -0.16 -1.29 10.21 30.62 0.31 -0.98 16 24 C -0.15 -1.04 10.21 30.62 0.31 -0.73 16 25 C 0.13 3.84 6.75 85.22 0.57 4.42 16 26 C -0.12 -3.58 2.45 -10.61 -0.03 -3.60 16 27 H 0.08 2.31 7.92 -2.38 -0.02 2.29 16 28 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 29 H 0.36 16.23 5.52 -92.71 -0.51 15.72 16 30 H 0.05 1.81 7.98 -2.39 -0.02 1.80 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.16 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 Total: -1.00 -76.48 351.62 3.18 -73.30 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.45 Total: 19.91 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.00 Total: 0.41 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -4.10 Total: -118.40 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.07 Total: -23.45 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -76.48 3.18 -73.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026265661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.860 kcal (2) G-P(sol) polarization free energy of solvation -76.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds