Wall clock time and date at job start Tue Mar 31 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00199 * 2 1 4 4 H 1.48501 * 109.46851 * 274.98772 * 3 2 1 5 5 H 1.48500 * 109.47000 * 34.98759 * 3 2 1 6 6 H 1.48503 * 109.47171 * 154.98834 * 3 2 1 7 7 C 1.38819 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99912 * 185.06314 * 7 2 1 9 9 N 1.36935 * 119.99629 * 5.06129 * 7 2 1 10 10 C 1.47576 * 134.49161 * 173.48295 * 9 7 2 11 11 C 1.53941 * 86.11946 * 155.35583 * 10 9 7 12 12 N 1.46503 * 113.73866 * 137.95016 * 11 10 9 13 13 C 1.34783 * 119.99747 * 156.92807 * 12 11 10 14 14 O 1.21552 * 119.99741 * 0.27528 * 13 12 11 15 15 C 1.47833 * 119.99883 * 179.97438 * 13 12 11 16 16 C 1.39938 * 120.93911 * 359.71723 * 15 13 12 17 17 N 1.32157 * 118.92155 * 179.76678 * 16 15 13 18 18 C 1.31865 * 120.96328 * 0.52212 * 17 16 15 19 19 C 1.50705 * 118.94558 * 179.70776 * 18 17 16 20 20 C 1.52998 * 117.50171 * 8.64145 * 19 18 17 21 21 C 1.53002 * 60.00117 * 252.51440 * 20 19 18 22 22 N 1.31869 * 122.09919 * 359.72808 * 18 17 16 23 23 C 1.32142 * 120.96348 * 0.02562 * 22 18 17 24 24 C 1.47815 * 134.45870 * 353.35269 * 9 7 2 25 25 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.77285 * 41.05571 * 10 9 7 27 27 H 1.09002 * 113.77154 * 269.66410 * 10 9 7 28 28 H 1.08990 * 113.74505 * 269.15583 * 11 10 9 29 29 H 0.96997 * 120.00291 * 336.92634 * 12 11 10 30 30 H 1.08003 * 120.54420 * 359.97438 * 16 15 13 31 31 H 1.09002 * 115.54887 * 154.35698 * 19 18 17 32 32 H 1.08996 * 117.49814 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.49620 * 145.02274 * 20 19 18 34 34 H 1.09004 * 117.49221 * 252.51458 * 21 20 19 35 35 H 1.08988 * 117.49935 * 107.49168 * 21 20 19 36 36 H 1.08007 * 120.53441 * 179.97438 * 23 22 18 37 37 H 1.08989 * 113.77107 * 90.37603 * 24 9 7 38 38 H 1.08998 * 113.83151 * 318.91198 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5966 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3296 -2.3857 -0.1057 10 6 1.7286 -3.7983 -0.2582 11 6 0.3710 -4.1419 0.3810 12 7 -0.3174 -5.2631 -0.2635 13 6 -1.2389 -5.9707 0.4198 14 8 -1.5022 -5.6754 1.5691 15 6 -1.9339 -7.1017 -0.2307 16 6 -1.6548 -7.4509 -1.5567 17 7 -2.2963 -8.4721 -2.0973 18 6 -3.1941 -9.1502 -1.4095 19 6 -3.9033 -10.3025 -2.0730 20 6 -3.3956 -10.7487 -3.4456 21 6 -4.7239 -9.9986 -3.3281 22 7 -3.4912 -8.8519 -0.1599 23 6 -2.8943 -7.8492 0.4601 24 6 -0.1002 -2.7609 -0.1095 25 1 -0.4850 0.8400 0.0004 26 1 2.5860 -4.0811 0.3526 27 1 1.8196 -4.1195 -1.2958 28 1 0.4076 -4.2331 1.4665 29 1 -0.1101 -5.4962 -1.1820 30 1 -0.9244 -6.8972 -2.1281 31 1 -4.2795 -11.0732 -1.4002 32 1 -2.5483 -10.2091 -3.8685 33 1 -3.4374 -11.8133 -3.6760 34 1 -5.6396 -10.5698 -3.4812 35 1 -4.7507 -8.9654 -3.6740 36 1 -3.1434 -7.6107 1.4837 37 1 -0.5475 -2.7767 -1.1032 38 1 -0.7002 -2.2169 0.6199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031056962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:09 Heat of formation + Delta-G solvation = 100.682853 kcal Electronic energy + Delta-G solvation = -21515.005753 eV Core-core repulsion = 18167.705526 eV Total energy + Delta-G solvation = -3347.300227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52296 -39.52699 -37.71407 -37.18995 -34.33407 -33.54645 -32.32356 -31.56388 -27.66141 -26.05827 -24.91998 -24.85041 -23.30526 -22.69049 -21.87113 -20.61626 -19.82272 -18.10915 -17.80605 -16.87845 -16.80282 -15.89532 -15.53707 -15.26717 -14.95054 -14.62976 -14.32807 -14.23842 -13.87762 -13.69041 -12.77233 -12.59044 -12.00968 -11.91798 -11.73284 -11.55744 -11.54268 -11.23826 -11.13505 -10.93056 -10.86250 -10.84102 -10.55477 -10.12037 -9.79553 -9.60537 -9.60154 -9.53619 -8.86189 -8.60480 -6.97962 -5.84615 -3.18068 0.18953 0.77588 2.73929 3.16417 3.34437 3.36321 3.39986 3.42324 3.43760 3.68460 3.87869 4.21495 4.39941 4.49130 4.54201 4.64370 4.68419 4.79252 5.00748 5.08147 5.30945 5.38752 5.46190 5.48416 5.49457 5.73469 5.86355 5.90553 5.99515 6.11043 6.30636 6.45528 6.59947 6.60559 7.16193 7.23773 7.47190 7.64483 7.74440 7.89545 8.27464 8.96457 9.62883 10.48828 11.32648 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.002794 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.818740 B =10017.796939 C =10243.332640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.090 3.910 12 N -0.706 5.706 13 C 0.565 3.435 14 O -0.531 6.531 15 C -0.241 4.241 16 C 0.187 3.813 17 N -0.519 5.519 18 C 0.362 3.638 19 C -0.108 4.108 20 C -0.152 4.152 21 C -0.154 4.154 22 N -0.518 5.518 23 C 0.211 3.789 24 C 0.157 3.843 25 H 0.255 0.745 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.114 0.886 29 H 0.395 0.605 30 H 0.174 0.826 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.184 0.816 37 H 0.031 0.969 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -20.890 -6.027 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.357 5.357 13 C 0.349 3.651 14 O -0.409 6.409 15 C -0.249 4.249 16 C 0.019 3.981 17 N -0.233 5.233 18 C 0.097 3.903 19 C -0.127 4.127 20 C -0.190 4.190 21 C -0.192 4.192 22 N -0.230 5.230 23 C 0.044 3.956 24 C 0.031 3.969 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.132 0.868 29 H 0.230 0.770 30 H 0.191 0.809 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.201 0.799 37 H 0.049 0.951 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.063 -21.048 -5.580 22.892 hybrid contribution 1.009 1.673 -0.148 1.959 sum -6.054 -19.376 -5.728 21.092 Atomic orbital electron populations 1.69840 1.05114 1.25630 1.55627 1.24866 0.95706 0.97720 1.01891 0.86089 0.78753 0.83322 0.77534 1.21535 1.21598 1.20437 1.18982 0.90753 0.81610 1.44202 0.89936 1.45696 1.02346 1.00559 1.84686 1.22875 0.94557 0.86829 0.97171 1.24058 0.93436 0.85011 0.98903 1.46079 1.40306 1.32997 1.16272 1.17750 0.79847 0.81442 0.86028 1.90802 1.64160 1.68783 1.17106 1.21937 1.03530 1.01689 0.97718 1.23483 0.93488 0.90179 0.90914 1.68133 1.08819 1.07610 1.38734 1.22369 0.88589 0.92689 0.86656 1.20697 1.04379 0.96622 0.91051 1.23050 0.98521 1.00973 0.96440 1.23006 0.95692 1.02386 0.98092 1.68275 1.26960 1.17289 1.10514 1.23532 0.86288 0.85857 0.99966 1.22662 0.88167 0.87788 0.98315 0.93453 0.93086 0.94654 0.86839 0.77038 0.80919 0.85096 0.87023 0.88046 0.87753 0.88395 0.79938 0.95097 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 11.51 55.49 0.64 -26.44 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.89 29.56 -169.99 -5.02 16.86 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.30 10.70 -15.06 -0.16 -6.46 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.17 3.70 -177.89 -0.66 -15.83 16 10 C 0.11 2.14 8.69 -2.97 -0.03 2.12 16 11 C 0.09 1.67 4.40 -70.15 -0.31 1.36 16 12 N -0.71 -10.14 5.33 -56.29 -0.30 -10.44 16 13 C 0.57 8.48 7.79 -12.33 -0.10 8.39 16 14 O -0.53 -9.91 16.07 5.32 0.09 -9.83 16 15 C -0.24 -2.97 5.91 -104.70 -0.62 -3.58 16 16 C 0.19 1.97 10.81 -16.78 -0.18 1.79 16 17 N -0.52 -5.82 9.32 -10.39 -0.10 -5.91 16 18 C 0.36 4.12 7.31 -157.07 -1.15 2.97 16 19 C -0.11 -0.92 6.23 -91.77 -0.57 -1.49 16 20 C -0.15 -1.05 10.01 -26.73 -0.27 -1.32 16 21 C -0.15 -1.08 10.23 -26.73 -0.27 -1.36 16 22 N -0.52 -6.35 10.31 -10.39 -0.11 -6.46 16 23 C 0.21 2.57 10.88 -16.78 -0.18 2.39 16 24 C 0.16 3.64 7.24 -2.84 -0.02 3.62 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.11 2.27 7.51 -51.93 -0.39 1.88 16 29 H 0.40 4.40 6.85 -40.82 -0.28 4.12 16 30 H 0.17 1.32 6.54 -52.48 -0.34 0.97 16 31 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.11 0.88 7.53 -51.93 -0.39 0.49 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.79 8.14 -51.94 -0.42 0.36 16 36 H 0.18 2.04 7.75 -52.48 -0.41 1.64 16 37 H 0.03 0.72 8.14 -51.94 -0.42 0.30 16 38 H 0.07 1.97 7.37 -51.93 -0.38 1.59 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -33.34 329.44 -9.15 -42.48 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.70 Total: 2.39 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -3.95 Total: 8.21 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.52 Total: -65.08 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.34 -9.15 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031056962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.168 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds