Wall clock time and date at job start Tue Mar 31 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00199 * 2 1 4 4 H 1.48501 * 109.46851 * 274.98772 * 3 2 1 5 5 H 1.48500 * 109.47000 * 34.98759 * 3 2 1 6 6 H 1.48503 * 109.47171 * 154.98834 * 3 2 1 7 7 C 1.38819 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99912 * 185.06314 * 7 2 1 9 9 N 1.36935 * 119.99629 * 5.06129 * 7 2 1 10 10 C 1.47576 * 134.49161 * 173.48295 * 9 7 2 11 11 C 1.53941 * 86.11946 * 155.35583 * 10 9 7 12 12 N 1.46503 * 113.73866 * 137.95016 * 11 10 9 13 13 C 1.34783 * 119.99747 * 156.92807 * 12 11 10 14 14 O 1.21552 * 119.99741 * 0.27528 * 13 12 11 15 15 C 1.47833 * 119.99883 * 179.97438 * 13 12 11 16 16 C 1.39938 * 120.93911 * 359.71723 * 15 13 12 17 17 N 1.32157 * 118.92155 * 179.76678 * 16 15 13 18 18 C 1.31865 * 120.96328 * 0.52212 * 17 16 15 19 19 C 1.50705 * 118.94558 * 179.70776 * 18 17 16 20 20 C 1.52998 * 117.50171 * 8.64145 * 19 18 17 21 21 C 1.53002 * 60.00117 * 252.51440 * 20 19 18 22 22 N 1.31869 * 122.09919 * 359.72808 * 18 17 16 23 23 C 1.32142 * 120.96348 * 0.02562 * 22 18 17 24 24 C 1.47815 * 134.45870 * 353.35269 * 9 7 2 25 25 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.77285 * 41.05571 * 10 9 7 27 27 H 1.09002 * 113.77154 * 269.66410 * 10 9 7 28 28 H 1.08990 * 113.74505 * 269.15583 * 11 10 9 29 29 H 0.96997 * 120.00291 * 336.92634 * 12 11 10 30 30 H 1.08003 * 120.54420 * 359.97438 * 16 15 13 31 31 H 1.09002 * 115.54887 * 154.35698 * 19 18 17 32 32 H 1.08996 * 117.49814 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.49620 * 145.02274 * 20 19 18 34 34 H 1.09004 * 117.49221 * 252.51458 * 21 20 19 35 35 H 1.08988 * 117.49935 * 107.49168 * 21 20 19 36 36 H 1.08007 * 120.53441 * 179.97438 * 23 22 18 37 37 H 1.08989 * 113.77107 * 90.37603 * 24 9 7 38 38 H 1.08998 * 113.83151 * 318.91198 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5966 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3296 -2.3857 -0.1057 10 6 1.7286 -3.7983 -0.2582 11 6 0.3710 -4.1419 0.3810 12 7 -0.3174 -5.2631 -0.2635 13 6 -1.2389 -5.9707 0.4198 14 8 -1.5022 -5.6754 1.5691 15 6 -1.9339 -7.1017 -0.2307 16 6 -1.6548 -7.4509 -1.5567 17 7 -2.2963 -8.4721 -2.0973 18 6 -3.1941 -9.1502 -1.4095 19 6 -3.9033 -10.3025 -2.0730 20 6 -3.3956 -10.7487 -3.4456 21 6 -4.7239 -9.9986 -3.3281 22 7 -3.4912 -8.8519 -0.1599 23 6 -2.8943 -7.8492 0.4601 24 6 -0.1002 -2.7609 -0.1095 25 1 -0.4850 0.8400 0.0004 26 1 2.5860 -4.0811 0.3526 27 1 1.8196 -4.1195 -1.2958 28 1 0.4076 -4.2331 1.4665 29 1 -0.1101 -5.4962 -1.1820 30 1 -0.9244 -6.8972 -2.1281 31 1 -4.2795 -11.0732 -1.4002 32 1 -2.5483 -10.2091 -3.8685 33 1 -3.4374 -11.8133 -3.6760 34 1 -5.6396 -10.5698 -3.4812 35 1 -4.7507 -8.9654 -3.6740 36 1 -3.1434 -7.6107 1.4837 37 1 -0.5475 -2.7767 -1.1032 38 1 -0.7002 -2.2169 0.6199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031056962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:08 Heat of formation + Delta-G solvation = 77.951258 kcal Electronic energy + Delta-G solvation = -21515.991469 eV Core-core repulsion = 18167.705526 eV Total energy + Delta-G solvation = -3348.285943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44528 -40.86206 -39.22260 -37.92239 -35.50682 -34.81192 -33.92715 -32.82663 -29.48993 -27.11386 -26.63234 -25.75888 -24.94899 -23.21916 -22.85505 -21.73026 -21.44779 -19.14930 -18.81563 -18.74842 -17.75178 -17.23829 -16.97470 -16.46462 -16.06428 -15.76200 -15.75213 -15.46673 -15.08640 -14.63112 -14.57894 -13.73100 -13.36720 -13.30263 -13.23031 -12.83774 -12.72872 -12.64716 -12.34920 -12.32600 -12.05903 -11.96218 -11.90079 -11.53487 -11.41020 -11.09579 -10.89396 -10.49709 -10.42809 -10.02914 -8.97247 -7.94476 -5.28618 -0.74579 -0.11292 1.45982 1.47683 1.56977 1.64638 1.93269 2.47863 2.49828 2.62740 2.85140 3.14516 3.22651 3.31520 3.39245 3.58105 3.80060 3.82721 3.87937 3.95135 4.09912 4.30424 4.33695 4.50067 4.64512 4.75885 4.81380 4.90867 4.93782 5.06311 5.11378 5.19663 5.21736 5.33716 5.47996 5.63407 5.71772 5.87859 6.42686 6.85135 6.87133 7.08370 7.57154 8.49906 9.22999 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.002794 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.818740 B =10017.796939 C =10243.332640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.639 5.639 10 C 0.123 3.877 11 C 0.121 3.879 12 N -0.693 5.693 13 C 0.571 3.429 14 O -0.572 6.572 15 C -0.251 4.251 16 C 0.199 3.801 17 N -0.525 5.525 18 C 0.358 3.642 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.146 4.146 22 N -0.532 5.532 23 C 0.207 3.793 24 C 0.154 3.846 25 H 0.249 0.751 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.415 0.585 30 H 0.205 0.795 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.029 0.971 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -22.776 -7.663 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.109 0.891 9 N -0.367 5.367 10 C -0.003 4.003 11 C 0.015 3.985 12 N -0.344 5.344 13 C 0.358 3.642 14 O -0.452 6.452 15 C -0.259 4.259 16 C 0.031 3.969 17 N -0.238 5.238 18 C 0.094 3.906 19 C -0.147 4.147 20 C -0.178 4.178 21 C -0.185 4.185 22 N -0.245 5.245 23 C 0.041 3.959 24 C 0.027 3.973 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.253 0.747 30 H 0.221 0.779 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.202 0.798 37 H 0.047 0.953 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.141 -23.000 -7.255 24.886 hybrid contribution 0.687 2.126 0.330 2.259 sum -5.454 -20.873 -6.925 22.658 Atomic orbital electron populations 1.70038 1.06668 1.25754 1.57735 1.25729 0.96541 1.01203 1.02686 0.85030 0.77929 0.78901 0.77303 1.21269 1.22435 1.18817 1.19419 0.91407 0.82908 1.42507 0.89113 1.46023 1.03328 1.02181 1.85126 1.23034 0.94937 0.83190 0.99107 1.23294 0.93090 0.84037 0.98102 1.45735 1.39903 1.31654 1.17103 1.18040 0.79194 0.81568 0.85430 1.90789 1.65332 1.70016 1.19060 1.21608 1.04340 1.01342 0.98607 1.23949 0.93129 0.89649 0.90138 1.68273 1.09101 1.07887 1.38552 1.22998 0.88217 0.92981 0.86449 1.20899 1.05603 0.96303 0.91917 1.23122 0.97976 1.02173 0.94494 1.23087 0.96766 1.02187 0.96421 1.68354 1.27449 1.17525 1.11197 1.23649 0.86178 0.85859 1.00258 1.22558 0.87342 0.90270 0.97101 0.94258 0.91463 0.91292 0.88412 0.74711 0.77876 0.84156 0.87963 0.85766 0.85615 0.89560 0.79777 0.95348 0.95231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.14 11.51 21.65 0.25 -57.89 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.98 45.44 29.56 68.60 2.03 47.47 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.23 -12.90 10.70 84.04 0.90 -12.00 16 8 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.64 -31.85 3.70 -716.73 -2.65 -34.50 16 10 C 0.12 4.39 8.69 86.49 0.75 5.15 16 11 C 0.12 4.38 4.40 46.75 0.21 4.59 16 12 N -0.69 -18.76 5.33 -450.29 -2.40 -21.16 16 13 C 0.57 16.76 7.79 86.78 0.68 17.44 16 14 O -0.57 -21.64 16.07 -3.88 -0.06 -21.70 16 15 C -0.25 -5.90 5.91 -19.91 -0.12 -6.02 16 16 C 0.20 3.75 10.81 85.06 0.92 4.67 16 17 N -0.52 -10.70 9.32 -186.79 -1.74 -12.44 16 18 C 0.36 7.62 7.31 138.71 1.01 8.64 16 19 C -0.13 -1.93 6.23 -11.54 -0.07 -2.01 16 20 C -0.14 -1.57 10.01 30.59 0.31 -1.27 16 21 C -0.15 -1.73 10.23 30.60 0.31 -1.42 16 22 N -0.53 -12.63 10.31 -186.80 -1.93 -14.56 16 23 C 0.21 4.99 10.88 85.06 0.93 5.91 16 24 C 0.15 7.28 7.24 86.44 0.63 7.91 16 25 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 28 H 0.10 3.94 7.51 -2.39 -0.02 3.92 16 29 H 0.41 7.99 6.85 -92.71 -0.64 7.35 16 30 H 0.20 2.38 6.54 -2.91 -0.02 2.36 16 31 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.38 7.53 -2.39 -0.02 1.36 16 33 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.19 4.21 7.75 -2.91 -0.02 4.19 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.03 1.64 7.37 -2.39 -0.02 1.62 16 Total: -1.00 -73.95 329.44 0.87 -73.08 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.46 Total: 13.55 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 6.91 Total: 28.16 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -8.47 Total: -140.55 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.95 0.87 -73.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031056962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.029 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds