Wall clock time and date at job start Tue Mar 31 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 119.99568 * 2 1 4 4 O 1.21656 * 120.00046 * 179.30074 * 3 2 1 5 5 C 1.47055 * 120.00390 * 359.30238 * 3 2 1 6 6 C 1.38000 * 125.92053 * 190.77215 * 5 3 2 7 7 C 1.39361 * 107.48566 * 179.90181 * 6 5 3 8 8 C 1.38077 * 107.51401 * 0.36046 * 7 6 5 9 9 C 1.43200 * 125.89296 * 179.80757 * 8 7 6 10 10 N 6.40855 * 50.75571 * 4.14052 * 2 1 3 11 11 N 1.36717 * 108.21066 * 359.77955 * 8 7 6 12 12 H 0.97003 * 125.69077 * 180.02562 * 11 8 7 13 13 C 1.46492 * 120.00441 * 180.02562 * 2 1 3 14 14 H 1.08997 * 110.78424 * 181.78736 * 13 2 1 15 15 C 1.55162 * 110.72077 * 305.02461 * 13 2 1 16 16 C 1.55131 * 101.48415 * 82.69173 * 15 13 2 17 17 N 1.47426 * 104.72407 * 37.30047 * 16 15 13 18 18 C 1.36927 * 125.65086 * 155.81602 * 17 16 15 19 19 H 1.08001 * 120.00554 * 187.27428 * 18 17 16 20 20 C 1.38815 * 119.99910 * 7.27084 * 18 17 16 21 21 N 1.31617 * 120.00278 * 6.68258 * 20 18 17 22 22 Si 1.86803 * 119.99935 * 186.68442 * 20 18 17 23 23 H 1.48503 * 109.46940 * 265.00226 * 22 20 18 24 24 H 1.48495 * 109.47230 * 25.00137 * 22 20 18 25 25 H 1.48500 * 109.47029 * 145.00400 * 22 20 18 26 26 C 1.47029 * 108.70063 * 335.54968 * 17 16 15 27 27 H 1.08999 * 109.46943 * 276.05391 * 1 2 3 28 28 H 1.08997 * 109.47034 * 36.05568 * 1 2 3 29 29 H 1.08998 * 109.46771 * 156.05787 * 1 2 3 30 30 H 1.08004 * 126.25756 * 0.03656 * 6 5 3 31 31 H 1.08000 * 126.23729 * 180.10577 * 7 6 5 32 32 H 1.09002 * 111.00478 * 200.93658 * 15 13 2 33 33 H 1.08997 * 111.00013 * 324.74875 * 15 13 2 34 34 H 1.08999 * 110.49679 * 278.45163 * 16 15 13 35 35 H 1.09001 * 110.33992 * 156.06155 * 16 15 13 36 36 H 0.96991 * 120.00217 * 179.97438 * 21 20 18 37 37 H 1.09000 * 109.88033 * 120.70464 * 26 17 16 38 38 H 1.09001 * 109.88311 * 241.87286 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3553 1.1674 0.0129 5 6 1.4036 2.4407 -0.0155 6 6 1.9518 3.6895 -0.2262 7 6 0.9147 4.6182 -0.1627 8 6 -0.2504 3.9231 0.0941 9 6 -1.5546 4.4959 0.2415 10 7 -2.5893 4.9502 0.3584 11 7 0.0559 2.5937 0.1828 12 1 -0.5752 1.8779 0.3566 13 6 2.1975 -1.2686 -0.0006 14 1 3.2730 -1.0942 0.0313 15 6 1.7508 -2.1611 1.1875 16 6 0.4680 -2.8189 0.6144 17 7 0.7745 -3.0618 -0.8071 18 6 0.1812 -4.0062 -1.6014 19 1 0.5559 -4.1863 -2.5982 20 6 -0.9019 -4.7323 -1.1253 21 7 -1.4416 -4.4248 0.0350 22 14 -1.5934 -6.1461 -2.1316 23 1 -2.7322 -5.6597 -2.9512 24 1 -0.5348 -6.6827 -3.0241 25 1 -2.0629 -7.2197 -1.2194 26 6 1.8183 -2.1176 -1.2323 27 1 -0.3633 0.1084 1.0219 28 1 -0.3633 0.8308 -0.6048 29 1 -0.3633 -0.9392 -0.4170 30 1 2.9937 3.9071 -0.4093 31 1 1.0063 5.6871 -0.2871 32 1 2.5078 -2.9101 1.4197 33 1 1.5200 -1.5568 2.0648 34 1 -0.3822 -2.1435 0.7091 35 1 0.2645 -3.7602 1.1248 36 1 -2.1987 -4.9319 0.3674 37 1 2.6910 -2.6653 -1.5880 38 1 1.4350 -1.4727 -2.0231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033022898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:12 Heat of formation + Delta-G solvation = 103.673694 kcal Electronic energy + Delta-G solvation = -22652.908752 eV Core-core repulsion = 19305.738218 eV Total energy + Delta-G solvation = -3347.170535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83768 -39.60859 -37.54604 -36.70612 -34.78069 -32.47796 -31.42862 -30.17381 -29.19797 -28.22499 -26.60156 -24.77963 -23.58450 -21.86360 -20.83119 -20.32769 -19.77235 -18.59949 -17.34700 -17.00864 -16.19536 -15.73740 -15.06059 -14.83754 -14.68691 -14.36835 -13.93074 -13.82018 -13.47499 -13.35936 -13.17188 -12.98385 -12.74323 -12.48448 -12.45632 -12.09765 -11.88651 -11.73803 -11.18694 -10.97879 -10.95097 -10.53028 -10.18679 -10.05838 -9.80599 -9.75866 -9.41332 -8.76387 -8.65337 -8.41172 -6.96856 -5.86619 -3.20679 0.77784 1.95229 1.99165 2.79675 2.99831 3.16084 3.24980 3.31839 3.38834 3.40095 3.72576 4.34831 4.39453 4.87682 4.91593 5.00935 5.20258 5.29054 5.35394 5.43477 5.57157 5.60868 5.72167 5.79090 5.91861 6.08831 6.16472 6.27715 6.40431 6.41677 6.47577 6.56799 6.76899 6.88038 7.12181 7.29772 7.39746 7.46149 7.66892 8.09067 8.13342 9.06793 9.67638 10.32705 11.24931 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.004218 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.294427 B = 6637.078593 C = 7573.034184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.588 5.588 3 C 0.582 3.418 4 O -0.528 6.528 5 C 0.008 3.992 6 C -0.120 4.120 7 C -0.125 4.125 8 C 0.076 3.924 9 C 0.277 3.723 10 N -0.400 5.400 11 N -0.518 5.518 12 H 0.430 0.570 13 C 0.126 3.874 14 H 0.106 0.894 15 C -0.157 4.157 16 C 0.160 3.840 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.125 3.875 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.253 0.747 37 H 0.037 0.963 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 13.693 1.799 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.319 5.319 3 C 0.370 3.630 4 O -0.404 6.404 5 C -0.110 4.110 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.042 4.042 9 C -0.039 4.039 10 N -0.077 5.077 11 N -0.124 5.124 12 H 0.279 0.721 13 C 0.023 3.977 14 H 0.124 0.876 15 C -0.197 4.197 16 C 0.035 3.965 17 N -0.330 5.330 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.206 1.206 25 H -0.216 1.216 26 C -0.001 4.001 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.583 14.010 2.035 14.603 hybrid contribution -0.591 -1.243 -0.468 1.454 sum 2.992 12.767 1.567 13.206 Atomic orbital electron populations 1.22615 0.80161 1.06213 1.01224 1.47736 1.06846 1.05832 1.71533 1.17175 0.86786 0.81819 0.77262 1.90824 1.12219 1.86404 1.50954 1.20742 0.82055 0.96222 1.12020 1.21245 1.00084 0.89191 1.04053 1.21245 0.89404 0.99900 1.04752 1.15700 0.88330 0.84239 1.15916 1.24349 0.91169 0.94730 0.93618 1.81328 1.09790 1.06945 1.09654 1.43347 1.08789 1.07172 1.53074 0.72091 1.22228 0.96616 0.81495 0.97313 0.87614 1.23423 1.01542 0.98472 0.96219 1.21800 0.90613 0.99587 0.84499 1.44544 1.43068 1.37867 1.07560 1.19047 1.09083 1.10879 0.96717 0.90491 1.24778 0.97584 1.00230 0.97581 1.69903 1.25278 1.41892 1.19793 0.86106 0.78845 0.81894 0.78942 1.21641 1.20565 1.21599 1.21668 0.93106 0.91397 0.93961 0.92175 0.91979 0.85557 0.82209 0.82610 0.90630 0.91852 0.95127 0.90156 0.93639 0.94504 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 7.14 59.85 0.43 0.98 16 2 N -0.59 -8.73 2.82 -173.24 -0.49 -9.22 16 3 C 0.58 8.50 7.65 -12.69 -0.10 8.41 16 4 O -0.53 -9.05 16.27 5.23 0.09 -8.96 16 5 C 0.01 0.10 6.64 -82.04 -0.54 -0.45 16 6 C -0.12 -1.20 10.62 -39.25 -0.42 -1.62 16 7 C -0.12 -1.06 10.80 -39.22 -0.42 -1.48 16 8 C 0.08 0.73 6.93 -83.82 -0.58 0.15 16 9 C 0.28 2.94 15.89 -22.47 -0.36 2.58 16 10 N -0.40 -5.05 18.54 41.84 0.78 -4.28 16 11 N -0.52 -5.23 5.07 -6.96 -0.04 -5.26 16 12 H 0.43 3.96 4.91 -40.82 -0.20 3.76 16 13 C 0.13 2.10 3.58 -66.09 -0.24 1.87 16 14 H 0.11 1.74 7.00 -51.93 -0.36 1.38 16 15 C -0.16 -2.69 6.54 -24.46 -0.16 -2.85 16 16 C 0.16 3.41 4.62 -2.41 -0.01 3.40 16 17 N -0.60 -13.96 2.98 -169.92 -0.51 -14.47 16 18 C -0.23 -5.96 10.26 -15.06 -0.15 -6.11 16 19 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 20 C -0.01 -0.14 5.44 -17.43 -0.09 -0.24 16 21 N -0.92 -25.03 10.47 55.49 0.58 -24.45 16 22 Si 0.91 21.04 29.56 -169.99 -5.02 16.02 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.13 2.43 6.30 -3.06 -0.02 2.41 16 27 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 28 H 0.06 0.70 5.17 -51.93 -0.27 0.43 16 29 H 0.13 2.19 4.73 -51.93 -0.25 1.94 16 30 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.67 5.50 -51.93 -0.29 0.38 16 35 H 0.08 1.99 6.63 -51.93 -0.34 1.65 16 36 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -29.60 315.82 -6.71 -36.31 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.19 Total: 2.51 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.67 Total: 7.04 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.33 Total: -57.68 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.60 -6.71 -36.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033022898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.979 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds