Wall clock time and date at job start Tue Mar 31 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 119.99568 * 2 1 4 4 O 1.21656 * 120.00046 * 179.30074 * 3 2 1 5 5 C 1.47055 * 120.00390 * 359.30238 * 3 2 1 6 6 C 1.38000 * 125.92053 * 190.77215 * 5 3 2 7 7 C 1.39361 * 107.48566 * 179.90181 * 6 5 3 8 8 C 1.38077 * 107.51401 * 0.36046 * 7 6 5 9 9 C 1.43200 * 125.89296 * 179.80757 * 8 7 6 10 10 N 6.40855 * 50.75571 * 4.14052 * 2 1 3 11 11 N 1.36717 * 108.21066 * 359.77955 * 8 7 6 12 12 H 0.97003 * 125.69077 * 180.02562 * 11 8 7 13 13 C 1.46492 * 120.00441 * 180.02562 * 2 1 3 14 14 H 1.08997 * 110.78424 * 181.78736 * 13 2 1 15 15 C 1.55162 * 110.72077 * 305.02461 * 13 2 1 16 16 C 1.55131 * 101.48415 * 82.69173 * 15 13 2 17 17 N 1.47426 * 104.72407 * 37.30047 * 16 15 13 18 18 C 1.36927 * 125.65086 * 155.81602 * 17 16 15 19 19 H 1.08001 * 120.00554 * 187.27428 * 18 17 16 20 20 C 1.38815 * 119.99910 * 7.27084 * 18 17 16 21 21 N 1.31617 * 120.00278 * 6.68258 * 20 18 17 22 22 Si 1.86803 * 119.99935 * 186.68442 * 20 18 17 23 23 H 1.48503 * 109.46940 * 265.00226 * 22 20 18 24 24 H 1.48495 * 109.47230 * 25.00137 * 22 20 18 25 25 H 1.48500 * 109.47029 * 145.00400 * 22 20 18 26 26 C 1.47029 * 108.70063 * 335.54968 * 17 16 15 27 27 H 1.08999 * 109.46943 * 276.05391 * 1 2 3 28 28 H 1.08997 * 109.47034 * 36.05568 * 1 2 3 29 29 H 1.08998 * 109.46771 * 156.05787 * 1 2 3 30 30 H 1.08004 * 126.25756 * 0.03656 * 6 5 3 31 31 H 1.08000 * 126.23729 * 180.10577 * 7 6 5 32 32 H 1.09002 * 111.00478 * 200.93658 * 15 13 2 33 33 H 1.08997 * 111.00013 * 324.74875 * 15 13 2 34 34 H 1.08999 * 110.49679 * 278.45163 * 16 15 13 35 35 H 1.09001 * 110.33992 * 156.06155 * 16 15 13 36 36 H 0.96991 * 120.00217 * 179.97438 * 21 20 18 37 37 H 1.09000 * 109.88033 * 120.70464 * 26 17 16 38 38 H 1.09001 * 109.88311 * 241.87286 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3553 1.1674 0.0129 5 6 1.4036 2.4407 -0.0155 6 6 1.9518 3.6895 -0.2262 7 6 0.9147 4.6182 -0.1627 8 6 -0.2504 3.9231 0.0941 9 6 -1.5546 4.4959 0.2415 10 7 -2.5893 4.9502 0.3584 11 7 0.0559 2.5937 0.1828 12 1 -0.5752 1.8779 0.3566 13 6 2.1975 -1.2686 -0.0006 14 1 3.2730 -1.0942 0.0313 15 6 1.7508 -2.1611 1.1875 16 6 0.4680 -2.8189 0.6144 17 7 0.7745 -3.0618 -0.8071 18 6 0.1812 -4.0062 -1.6014 19 1 0.5559 -4.1863 -2.5982 20 6 -0.9019 -4.7323 -1.1253 21 7 -1.4416 -4.4248 0.0350 22 14 -1.5934 -6.1461 -2.1316 23 1 -2.7322 -5.6597 -2.9512 24 1 -0.5348 -6.6827 -3.0241 25 1 -2.0629 -7.2197 -1.2194 26 6 1.8183 -2.1176 -1.2323 27 1 -0.3633 0.1084 1.0219 28 1 -0.3633 0.8308 -0.6048 29 1 -0.3633 -0.9392 -0.4170 30 1 2.9937 3.9071 -0.4093 31 1 1.0063 5.6871 -0.2871 32 1 2.5078 -2.9101 1.4197 33 1 1.5200 -1.5568 2.0648 34 1 -0.3822 -2.1435 0.7091 35 1 0.2645 -3.7602 1.1248 36 1 -2.1987 -4.9319 0.3674 37 1 2.6910 -2.6653 -1.5880 38 1 1.4350 -1.4727 -2.0231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033022898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:11 Heat of formation + Delta-G solvation = 86.155039 kcal Electronic energy + Delta-G solvation = -22653.668418 eV Core-core repulsion = 19305.738218 eV Total energy + Delta-G solvation = -3347.930201 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71352 -40.81635 -38.95553 -37.61816 -36.18000 -34.15329 -32.37775 -31.37357 -30.62427 -29.61005 -27.90730 -26.44878 -24.76922 -22.80186 -22.08717 -21.61296 -21.00033 -19.63260 -18.92259 -18.39236 -17.48353 -16.80827 -16.70563 -16.00054 -15.73838 -15.63192 -15.57408 -14.65818 -14.54670 -14.51541 -14.18423 -14.00582 -13.98987 -13.77466 -13.58163 -13.36388 -13.33362 -13.15158 -12.92375 -12.78872 -12.43176 -12.07844 -11.92670 -11.83913 -11.53167 -11.09427 -10.63991 -10.17740 -9.83245 -9.36314 -8.85837 -7.86439 -5.20580 -0.09597 1.10323 1.14486 1.47068 1.48952 1.57225 1.77006 2.04334 2.23688 2.36143 2.49566 2.90579 3.32982 3.33534 3.69742 3.82360 3.88466 3.99330 4.15242 4.25166 4.30355 4.35402 4.60146 4.65558 4.73620 4.85796 4.91559 5.01071 5.07769 5.13715 5.36234 5.48957 5.55695 5.62513 5.74683 5.78180 6.00447 6.22105 6.26517 6.29817 6.95056 7.10511 7.76341 8.40984 9.23198 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.004218 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.294427 B = 6637.078593 C = 7573.034184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.591 5.591 3 C 0.585 3.415 4 O -0.556 6.556 5 C -0.012 4.012 6 C -0.112 4.112 7 C -0.107 4.107 8 C 0.079 3.921 9 C 0.300 3.700 10 N -0.435 5.435 11 N -0.517 5.517 12 H 0.433 0.567 13 C 0.139 3.861 14 H 0.113 0.887 15 C -0.141 4.141 16 C 0.166 3.834 17 N -0.619 5.619 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.054 4.054 21 N -0.943 5.943 22 Si 0.970 3.030 23 H -0.289 1.289 24 H -0.273 1.273 25 H -0.295 1.295 26 C 0.126 3.874 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.248 0.752 37 H 0.038 0.962 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 15.506 1.678 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.322 5.322 3 C 0.375 3.625 4 O -0.435 6.435 5 C -0.130 4.130 6 C -0.138 4.138 7 C -0.135 4.135 8 C -0.039 4.039 9 C -0.016 4.016 10 N -0.113 5.113 11 N -0.123 5.123 12 H 0.281 0.719 13 C 0.036 3.964 14 H 0.131 0.869 15 C -0.180 4.180 16 C 0.041 3.959 17 N -0.346 5.346 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.248 4.248 21 N -0.591 5.591 22 Si 0.799 3.201 23 H -0.216 1.216 24 H -0.198 1.198 25 H -0.221 1.221 26 C 0.000 4.000 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.189 0.811 31 H 0.205 0.795 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.185 15.840 1.907 16.494 hybrid contribution -0.749 -1.735 -0.461 1.945 sum 3.436 14.105 1.446 14.589 Atomic orbital electron populations 1.22556 0.79354 1.05076 1.02612 1.47723 1.07256 1.05442 1.71790 1.17443 0.86554 0.82305 0.76226 1.90805 1.13464 1.86874 1.52318 1.20414 0.82679 0.95435 1.14426 1.21506 1.00985 0.88649 1.02691 1.21600 0.88003 1.01178 1.02743 1.15754 0.88183 0.84084 1.15840 1.24327 0.90879 0.93796 0.92554 1.81363 1.10807 1.08184 1.10930 1.43219 1.08281 1.07525 1.53251 0.71860 1.21968 0.97115 0.81946 0.95409 0.86912 1.23269 0.99305 0.98566 0.96902 1.21626 0.92666 0.97893 0.83673 1.44728 1.43532 1.38140 1.08221 1.19331 1.09122 1.11441 0.97049 0.90667 1.25452 0.98248 1.02405 0.98686 1.70081 1.25469 1.42614 1.20960 0.85192 0.78136 0.79159 0.77590 1.21576 1.19806 1.22137 1.21738 0.91963 0.91100 0.95198 0.90259 0.89768 0.89294 0.81128 0.79485 0.90207 0.89815 0.95585 0.94042 0.94292 0.94418 0.95775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.21 7.14 127.77 0.91 2.13 16 2 N -0.59 -16.81 2.82 -820.25 -2.32 -19.12 16 3 C 0.58 16.10 7.65 86.56 0.66 16.76 16 4 O -0.56 -18.24 16.27 -4.21 -0.07 -18.31 16 5 C -0.01 -0.24 6.64 40.58 0.27 0.03 16 6 C -0.11 -1.89 10.62 22.48 0.24 -1.65 16 7 C -0.11 -1.41 10.80 22.50 0.24 -1.16 16 8 C 0.08 1.28 6.93 39.59 0.27 1.55 16 9 C 0.30 5.67 15.89 88.33 1.40 7.07 16 10 N -0.44 -10.30 18.54 19.00 0.35 -9.95 16 11 N -0.52 -9.15 5.07 -175.94 -0.89 -10.04 16 12 H 0.43 7.04 4.91 -92.71 -0.46 6.59 16 13 C 0.14 4.51 3.58 46.18 0.17 4.68 16 14 H 0.11 3.57 7.00 -2.39 -0.02 3.55 16 15 C -0.14 -4.72 6.54 32.07 0.21 -4.51 16 16 C 0.17 7.21 4.62 86.93 0.40 7.61 16 17 N -0.62 -29.09 2.98 -691.52 -2.06 -31.15 16 18 C -0.24 -12.69 10.26 84.04 0.86 -11.82 16 19 H 0.08 3.89 7.84 -2.91 -0.02 3.86 16 20 C -0.05 -2.89 5.44 84.86 0.46 -2.43 16 21 N -0.94 -52.44 10.47 21.65 0.23 -52.21 16 22 Si 0.97 43.76 29.56 68.60 2.03 45.79 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.13 4.87 6.30 86.73 0.55 5.42 16 27 H 0.08 1.73 7.73 -2.39 -0.02 1.71 16 28 H 0.08 1.77 5.17 -2.39 -0.01 1.76 16 29 H 0.09 3.09 4.73 -2.39 -0.01 3.08 16 30 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.03 1.16 5.50 -2.39 -0.01 1.15 16 35 H 0.04 2.12 6.63 -2.39 -0.02 2.10 16 36 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 Total: -1.00 -64.30 315.82 4.58 -59.72 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.66 Total: 11.62 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 6.65 Total: 23.67 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -4.69 Total: -122.48 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -64.30 4.58 -59.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033022898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.870 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds