Wall clock time and date at job start Tue Mar 31 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00153 * 2 1 4 4 H 1.48499 * 109.47103 * 274.98497 * 3 2 1 5 5 H 1.48496 * 109.47388 * 34.98532 * 3 2 1 6 6 H 1.48506 * 109.46935 * 154.98553 * 3 2 1 7 7 C 1.38813 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00032 * 185.77282 * 7 2 1 9 9 N 1.36936 * 120.00299 * 5.75819 * 7 2 1 10 10 C 1.48161 * 126.39784 * 353.02364 * 9 7 2 11 11 C 1.55296 * 107.04525 * 185.02876 * 10 9 7 12 12 C 1.53709 * 101.81219 * 22.44788 * 11 10 9 13 13 H 1.08995 * 111.10850 * 78.60352 * 12 11 10 14 14 C 1.51950 * 114.98539 * 206.56220 * 12 11 10 15 15 C 1.53881 * 107.29514 * 175.43260 * 14 12 11 16 16 N 1.46598 * 110.71593 * 308.18478 * 15 14 12 17 17 C 1.34778 * 119.75665 * 227.74470 * 16 15 14 18 18 O 1.21606 * 120.00327 * 180.02562 * 17 16 15 19 19 C 1.43202 * 119.99537 * 359.97438 * 17 16 15 20 20 C 9.19718 * 116.12288 * 185.26162 * 2 1 3 21 21 C 9.25912 * 144.01284 * 190.38995 * 7 1 2 22 22 C 1.53008 * 117.49777 * 180.70733 * 21 20 19 23 23 C 1.53003 * 59.99906 * 252.51269 * 22 21 20 24 24 C 1.47798 * 120.48729 * 47.72078 * 16 15 14 25 25 C 1.45505 * 126.40105 * 173.05578 * 9 7 2 26 26 H 1.08992 * 109.57164 * 265.81747 * 25 9 7 27 27 H 0.96997 * 119.99843 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.91818 * 304.38590 * 10 9 7 29 29 H 1.09007 * 109.91710 * 65.48336 * 10 9 7 30 30 H 1.09002 * 110.95855 * 140.57093 * 11 10 9 31 31 H 1.08991 * 110.96354 * 264.27734 * 11 10 9 32 32 H 1.09009 * 109.89552 * 55.98407 * 14 12 11 33 33 H 1.08998 * 109.88696 * 294.88074 * 14 12 11 34 34 H 1.09004 * 109.22869 * 187.86728 * 15 14 12 35 35 H 1.09001 * 109.22767 * 68.50433 * 15 14 12 36 36 H 1.08997 * 115.55276 * 326.42368 * 21 20 19 37 37 H 1.08993 * 117.49832 * 359.97438 * 22 21 20 38 38 H 1.09000 * 117.49455 * 145.02162 * 22 21 20 39 39 H 1.09006 * 117.49521 * 252.51180 * 23 22 21 40 40 H 1.08995 * 117.50207 * 107.49553 * 23 22 21 41 41 H 1.09003 * 110.06134 * 67.98546 * 24 16 15 42 42 H 1.09005 * 110.06489 * 189.43690 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5966 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0861 -1.2046 0.0946 9 7 1.3307 -2.3852 -0.1179 10 6 -0.1407 -2.5585 -0.1095 11 6 -0.4193 -4.0859 -0.1427 12 6 0.8970 -4.6579 0.4075 13 1 0.9394 -4.5710 1.4931 14 6 1.2268 -6.0676 -0.0539 15 6 2.6191 -6.4166 0.5007 16 7 3.5896 -5.3719 0.1602 17 6 4.7856 -5.7135 -0.3589 18 8 5.5942 -4.8506 -0.6425 19 6 5.1045 -7.0926 -0.5754 20 6 5.3657 -8.2229 -0.7573 21 6 5.6934 -9.6408 -0.9769 22 6 7.1735 -10.0183 -1.0658 23 6 6.3057 -10.0236 -2.3258 24 6 3.2660 -3.9469 0.3815 25 6 1.9188 -3.7068 -0.2749 26 1 1.9792 -3.9560 -1.3342 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5606 -2.1240 0.7976 29 1 -0.5761 -2.0794 -0.9865 30 1 -1.2572 -4.3436 0.5051 31 1 -0.5977 -4.4277 -1.1622 32 1 1.2407 -6.1077 -1.1432 33 1 0.4868 -6.7674 0.3344 34 1 2.9479 -7.3646 0.0748 35 1 2.5601 -6.5121 1.5849 36 1 5.0181 -10.3573 -0.5093 37 1 7.9045 -9.2165 -0.9620 38 1 7.4722 -10.9833 -0.6563 39 1 6.0335 -10.9922 -2.7453 40 1 6.4657 -9.2254 -3.0506 41 1 3.2040 -3.7390 1.4497 42 1 4.0259 -3.3150 -0.0785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042057605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:29 Heat of formation + Delta-G solvation = 56.948073 kcal Electronic energy + Delta-G solvation = -22643.607713 eV Core-core repulsion = 19397.951347 eV Total energy + Delta-G solvation = -3245.656366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58271 -39.79154 -38.48386 -36.96100 -34.74914 -33.90130 -32.91880 -31.02337 -30.20206 -26.71717 -26.47227 -24.61012 -23.62753 -23.28210 -22.34603 -21.83516 -20.96140 -19.13304 -18.47228 -17.86283 -17.20002 -16.87276 -16.53179 -15.94246 -15.85884 -15.70740 -15.31724 -14.98616 -14.52211 -14.11558 -13.85597 -13.65636 -13.52036 -13.20866 -13.16649 -12.97653 -12.77525 -12.58014 -12.41777 -12.33824 -12.15877 -12.01539 -11.77722 -11.62110 -11.56463 -11.39240 -11.08587 -10.95343 -10.74004 -10.73848 -9.85838 -8.92083 -7.90101 -5.24210 0.35741 1.13458 1.42371 1.44220 1.53083 1.76351 2.21954 2.47053 2.88891 3.09241 3.29123 3.44287 3.71072 3.83697 3.88718 3.93967 3.96273 4.03736 4.21665 4.24400 4.25131 4.44632 4.48201 4.58550 4.68695 4.76168 4.78435 4.85871 4.86997 4.98622 5.06601 5.11703 5.12538 5.18974 5.22965 5.30932 5.48025 5.53457 5.66672 5.75304 6.10901 6.16086 6.17647 6.84910 7.05848 7.73536 8.40986 9.21710 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.003719 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.229736 B = 7527.019859 C = 8448.542875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.081 0.919 14 C -0.107 4.107 15 C 0.105 3.895 16 N -0.590 5.590 17 C 0.623 3.377 18 O -0.580 6.580 19 C -0.258 4.258 20 C -0.020 4.020 21 C -0.081 4.081 22 C -0.155 4.155 23 C -0.153 4.153 24 C 0.129 3.871 25 C 0.147 3.853 26 H 0.008 0.992 27 H 0.248 0.752 28 H 0.018 0.982 29 H 0.005 0.995 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -25.963 0.310 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.117 4.117 13 H 0.099 0.901 14 C -0.146 4.146 15 C -0.016 4.016 16 N -0.321 5.321 17 C 0.413 3.587 18 O -0.462 6.462 19 C -0.261 4.261 20 C -0.023 4.023 21 C -0.098 4.098 22 C -0.191 4.191 23 C -0.190 4.190 24 C 0.006 3.994 25 C 0.039 3.961 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.023 0.977 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.104 0.896 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.037 -25.257 0.202 25.969 hybrid contribution 0.307 2.094 -0.147 2.121 sum 6.345 -23.163 0.055 24.016 Atomic orbital electron populations 1.70151 1.06094 1.25346 1.57869 1.25577 0.96572 1.00701 1.02466 0.85173 0.77928 0.79700 0.77279 1.21637 1.21566 1.19601 1.19331 0.91129 0.83852 1.42636 0.90640 1.44432 1.02623 1.01193 1.85506 1.21370 0.82798 0.92413 0.97814 1.22596 0.97491 0.94514 1.01272 1.22232 0.94763 0.94811 0.99895 0.90103 1.21781 0.96041 0.95524 1.01208 1.22067 0.88204 0.89573 1.01803 1.48172 1.14889 1.07936 1.61147 1.15177 0.81883 0.84697 0.76914 1.90811 1.50096 1.51484 1.53842 1.20182 1.05515 0.92391 1.08028 1.22123 0.95347 0.92843 0.91966 1.19378 0.99891 0.85194 1.05339 1.23241 0.90332 1.04448 1.01129 1.23235 1.01538 1.04447 0.89789 1.21418 0.97429 0.79961 1.00571 1.21122 0.92822 0.86505 0.95685 0.97479 0.94267 0.96345 0.97708 0.89236 0.91205 0.91682 0.86336 0.87979 0.89257 0.81392 0.89605 0.84518 0.84492 0.89599 0.90654 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.93 10.48 21.65 0.23 -57.70 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 3 Si 0.97 47.75 29.56 68.60 2.03 49.78 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.24 -14.00 9.89 84.03 0.83 -13.17 16 8 H 0.08 4.34 7.37 -2.91 -0.02 4.32 16 9 N -0.61 -32.27 3.35 -669.32 -2.24 -34.52 16 10 C 0.18 8.94 5.44 86.85 0.47 9.41 16 11 C -0.12 -4.18 6.54 31.62 0.21 -3.98 16 12 C -0.10 -3.12 2.61 -10.08 -0.03 -3.15 16 13 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 14 C -0.11 -2.41 5.72 30.55 0.17 -2.24 16 15 C 0.10 2.37 6.22 86.66 0.54 2.91 16 16 N -0.59 -19.50 3.01 -827.77 -2.49 -21.99 16 17 C 0.62 22.72 7.53 85.49 0.64 23.37 16 18 O -0.58 -26.47 16.45 -4.05 -0.07 -26.54 16 19 C -0.26 -7.42 11.50 30.01 0.35 -7.07 16 20 C -0.02 -0.43 13.40 31.12 0.42 -0.02 16 21 C -0.08 -0.92 6.22 -12.60 -0.08 -1.00 16 22 C -0.15 -1.42 10.21 30.60 0.31 -1.10 16 23 C -0.15 -1.40 10.21 30.60 0.31 -1.09 16 24 C 0.13 5.21 5.65 85.73 0.48 5.69 16 25 C 0.15 6.23 2.77 45.59 0.13 6.36 16 26 H 0.01 0.36 7.90 -2.39 -0.02 0.34 16 27 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.02 1.00 7.45 -2.39 -0.02 0.99 16 29 H 0.00 0.26 7.58 -2.38 -0.02 0.24 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 32 H 0.06 1.56 7.97 -2.38 -0.02 1.55 16 33 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.90 6.25 -2.38 -0.01 1.88 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.17 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.14 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.06 2.87 6.77 -2.38 -0.02 2.85 16 Total: -1.00 -77.76 342.69 3.69 -74.07 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.01 Total: 5.03 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.23 Total: 11.87 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.51 Total: -114.21 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.07 Total: -26.54 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -77.76 3.69 -74.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042057605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.018 kcal (2) G-P(sol) polarization free energy of solvation -77.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds