Wall clock time and date at job start Tue Mar 31 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.00259 * 3 2 1 6 6 H 1.48507 * 109.46833 * 59.99852 * 3 2 1 7 7 C 1.38816 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.46712 * 125.31596 * 179.97438 * 9 7 2 11 11 C 1.54044 * 106.82218 * 161.79970 * 10 9 7 12 12 H 1.08996 * 113.43954 * 262.66849 * 11 10 9 13 13 C 1.55130 * 108.25476 * 135.80777 * 11 10 9 14 14 C 1.54850 * 101.77646 * 286.09139 * 13 11 10 15 15 N 1.47394 * 104.81161 * 322.81194 * 14 13 11 16 16 C 1.34780 * 125.58888 * 204.60715 * 15 14 13 17 17 O 1.21514 * 119.99566 * 183.19843 * 16 15 14 18 18 C 1.48136 * 119.99969 * 3.47803 * 16 15 14 19 19 C 1.40107 * 121.14595 * 335.63181 * 18 16 15 20 20 C 1.38500 * 117.82265 * 179.97438 * 19 18 16 21 21 N 1.31918 * 119.97178 * 359.97438 * 20 19 18 22 22 N 1.28277 * 122.51462 * 0.02562 * 21 20 19 23 23 C 1.31933 * 122.32635 * 359.72206 * 22 21 20 24 24 C 1.46731 * 108.82214 * 24.87574 * 15 14 13 25 25 H 1.08996 * 111.32888 * 235.85790 * 24 15 14 26 26 C 1.46628 * 125.32495 * 359.97438 * 9 7 2 27 27 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.98665 * 42.46289 * 10 9 7 29 29 H 1.08994 * 109.98860 * 281.13988 * 10 9 7 30 30 H 1.08998 * 110.96915 * 167.96513 * 13 11 10 31 31 H 1.09005 * 110.96420 * 44.21208 * 13 11 10 32 32 H 1.09007 * 110.36914 * 203.98322 * 14 13 11 33 33 H 1.08994 * 110.37293 * 81.65204 * 14 13 11 34 34 H 1.08000 * 121.08664 * 359.97438 * 19 18 16 35 35 H 1.08002 * 120.01631 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.17299 * 180.27540 * 23 22 21 37 37 H 1.08996 * 109.75910 * 300.94271 * 26 9 7 38 38 H 1.08994 * 109.75800 * 61.64978 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.9382 -3.7211 -0.0016 11 6 0.8519 -4.7113 0.4593 12 1 0.9112 -4.9574 1.5195 13 6 0.9030 -5.9546 -0.4670 14 6 0.2735 -5.4039 -1.7702 15 7 -0.7944 -4.4943 -1.3176 16 6 -1.8876 -4.1530 -2.0284 17 8 -2.6774 -3.3467 -1.5783 18 6 -2.1293 -4.7656 -3.3553 19 6 -1.0733 -5.2794 -4.1194 20 6 -1.3776 -5.8373 -5.3500 21 7 -2.6288 -5.8722 -5.7665 22 7 -3.6001 -5.4036 -5.0719 23 6 -3.4190 -4.8561 -3.8853 24 6 -0.4691 -4.0162 0.0309 25 1 -1.2752 -4.2304 0.7327 26 6 -0.1344 -2.5240 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 2.7809 -3.7444 0.6893 29 1 2.2728 -3.9766 -1.0070 30 1 0.3053 -6.7697 -0.0592 31 1 1.9317 -6.2736 -0.6353 32 1 -0.1465 -6.2173 -2.3619 33 1 1.0175 -4.8571 -2.3494 34 1 -0.0554 -5.2417 -3.7605 35 1 -0.5910 -6.2443 -5.9681 36 1 -4.2627 -4.4764 -3.3282 37 1 -0.5495 -2.0334 0.8809 38 1 -0.5472 -2.0728 -0.9017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076283050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:13 Heat of formation + Delta-G solvation = 53.629085 kcal Electronic energy + Delta-G solvation = -23272.161677 eV Core-core repulsion = 19922.821046 eV Total energy + Delta-G solvation = -3349.340632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46332 -41.38662 -39.37832 -36.72919 -34.82444 -33.64855 -33.59654 -32.51665 -30.60089 -28.25805 -26.79372 -26.54242 -25.55299 -23.85118 -22.72573 -21.33597 -20.56080 -19.14699 -18.69640 -18.18130 -17.75531 -17.54561 -16.87606 -16.31392 -16.18708 -15.73253 -15.52510 -15.43376 -14.74792 -14.72398 -14.37824 -14.15259 -13.91839 -13.43633 -13.01490 -12.95887 -12.84322 -12.45026 -12.13840 -12.08169 -11.89497 -11.87512 -11.65615 -11.49627 -11.45164 -11.27290 -11.20528 -10.81317 -10.68253 -9.77432 -8.90880 -7.86075 -5.23886 -0.77274 -0.22141 1.42264 1.43414 1.53996 1.57607 1.71450 2.46721 2.47624 3.00802 3.08864 3.31754 3.34268 3.46723 3.49787 3.56749 3.74649 3.81511 3.99119 4.18778 4.36081 4.38227 4.45799 4.46128 4.53620 4.67116 4.75649 4.81733 4.90512 5.04886 5.08612 5.18513 5.25369 5.40385 5.44849 5.58832 5.77260 6.17710 6.37714 6.91283 7.07052 7.50913 7.78180 8.38932 9.22684 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.005088 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.866047 B = 5501.609061 C = 6138.330750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.295 1.295 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.624 5.624 10 C 0.133 3.867 11 C -0.097 4.097 12 H 0.119 0.881 13 C -0.106 4.106 14 C 0.075 3.925 15 N -0.591 5.591 16 C 0.563 3.437 17 O -0.569 6.569 18 C -0.130 4.130 19 C -0.081 4.081 20 C 0.054 3.946 21 N -0.258 5.258 22 N -0.266 5.266 23 C 0.085 3.915 24 C 0.118 3.882 25 H 0.078 0.922 26 C 0.192 3.808 27 H 0.242 0.758 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.195 0.805 35 H 0.228 0.772 36 H 0.179 0.821 37 H 0.001 0.999 38 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -18.858 -5.752 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.351 5.351 10 C 0.009 3.991 11 C -0.116 4.116 12 H 0.137 0.863 13 C -0.144 4.144 14 C -0.045 4.045 15 N -0.322 5.322 16 C 0.351 3.649 17 O -0.449 6.449 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.111 4.111 21 N -0.099 5.099 22 N -0.107 5.107 23 C -0.080 4.080 24 C 0.014 3.986 25 H 0.096 0.904 26 C 0.066 3.934 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.211 0.789 35 H 0.244 0.756 36 H 0.196 0.804 37 H 0.019 0.981 38 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 2.321 -18.666 -6.759 19.987 hybrid contribution 0.700 2.381 1.416 2.858 sum 3.021 -16.284 -5.343 17.402 Atomic orbital electron populations 1.70282 1.06635 1.24914 1.58526 1.25726 0.96386 1.01414 1.02854 0.85033 0.78570 0.79495 0.76407 1.18050 1.22553 1.22193 1.19537 0.91173 0.83555 1.42422 0.89117 1.44546 1.01721 1.01794 1.86999 1.21642 0.95159 0.83728 0.98619 1.23173 0.91228 0.95506 1.01716 0.86281 1.22849 1.03878 0.95591 0.92067 1.23205 0.89038 0.92845 0.99449 1.48330 1.21142 1.45982 1.16769 1.18041 0.80876 0.81446 0.84513 1.90831 1.47607 1.35141 1.71273 1.21046 0.96727 1.00788 0.95874 1.23633 1.01953 0.91349 0.94059 1.25057 0.96406 0.95183 0.94415 1.72770 0.99383 1.10960 1.26763 1.73105 1.25788 1.07638 1.04120 1.24534 0.97105 0.93151 0.93201 1.22317 0.98213 0.94760 0.83339 0.90367 1.20671 0.84367 0.90848 0.97515 0.94869 0.93638 0.94455 0.88273 0.86131 0.86737 0.89931 0.78856 0.75574 0.80374 0.98061 0.97871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.84 10.24 21.65 0.22 -60.62 16 2 C -0.07 -4.14 5.48 84.86 0.47 -3.68 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.24 -13.13 10.25 84.03 0.86 -12.27 16 8 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 9 N -0.62 -31.01 3.38 -699.21 -2.36 -33.37 16 10 C 0.13 4.58 6.45 86.69 0.56 5.14 16 11 C -0.10 -2.57 4.35 -8.92 -0.04 -2.61 16 12 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 13 C -0.11 -1.62 6.35 31.96 0.20 -1.41 16 14 C 0.08 1.39 4.56 86.84 0.40 1.79 16 15 N -0.59 -18.32 2.99 -790.18 -2.36 -20.69 16 16 C 0.56 19.98 7.31 86.87 0.63 20.61 16 17 O -0.57 -26.29 16.43 -3.76 -0.06 -26.36 16 18 C -0.13 -3.53 5.77 -19.83 -0.11 -3.64 16 19 C -0.08 -1.46 8.15 22.79 0.19 -1.28 16 20 C 0.05 0.86 11.30 84.74 0.96 1.82 16 21 N -0.26 -6.25 11.48 -57.33 -0.66 -6.91 16 22 N -0.27 -7.51 11.49 -56.53 -0.65 -8.16 16 23 C 0.09 2.39 10.91 85.04 0.93 3.31 16 24 C 0.12 4.30 3.57 45.72 0.16 4.46 16 25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 26 C 0.19 9.86 4.88 86.34 0.42 10.28 16 27 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.17 6.52 -2.39 -0.02 1.16 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.12 1.16 8.08 -2.38 -0.02 1.14 16 32 H 0.11 1.31 5.97 -2.38 -0.01 1.30 16 33 H 0.08 1.52 6.46 -2.39 -0.02 1.50 16 34 H 0.19 2.44 4.55 -2.91 -0.01 2.43 16 35 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 36 H 0.18 4.88 7.92 -2.91 -0.02 4.86 16 37 H 0.00 0.07 7.33 -2.39 -0.02 0.06 16 38 H 0.00 0.19 6.57 -2.39 -0.02 0.17 16 Total: -1.00 -84.23 306.39 2.87 -81.36 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.09 Total: 3.60 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 5.62 Total: 22.53 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.81 Total: -129.75 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.36 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -84.23 2.87 -81.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076283050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.986 kcal (2) G-P(sol) polarization free energy of solvation -84.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds