Wall clock time and date at job start Tue Mar 31 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00287 * 2 1 4 4 H 1.48499 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46830 * 239.99750 * 3 2 1 6 6 H 1.48496 * 109.47019 * 119.99468 * 3 2 1 7 7 C 1.38814 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99607 * 155.22048 * 7 2 1 9 9 N 1.36941 * 120.00017 * 335.22751 * 7 2 1 10 10 C 1.46612 * 119.88772 * 331.66213 * 9 7 2 11 11 C 1.53112 * 108.00699 * 237.30477 * 10 9 7 12 12 C 1.53007 * 109.44450 * 301.02382 * 11 10 9 13 13 H 1.08998 * 113.42258 * 275.04014 * 12 11 10 14 14 C 1.54653 * 110.83509 * 143.89232 * 12 11 10 15 15 N 1.47801 * 85.79250 * 270.23021 * 14 12 11 16 16 C 1.34778 * 135.01168 * 153.79280 * 15 14 12 17 17 O 1.21473 * 119.99986 * 180.02562 * 16 15 14 18 18 C 1.48532 * 120.00137 * 0.02562 * 16 15 14 19 19 N 1.32459 * 119.18642 * 359.73172 * 18 16 15 20 20 C 1.32117 * 120.77048 * 179.75870 * 19 18 16 21 21 C 1.38803 * 119.16159 * 0.50357 * 20 19 18 22 22 C 1.38801 * 118.50663 * 359.75398 * 21 20 19 23 23 N 1.32109 * 119.16269 * 359.97438 * 22 21 20 24 24 C 1.46818 * 89.97734 * 333.80869 * 15 14 12 25 25 H 1.09008 * 110.91028 * 274.54727 * 24 15 14 26 26 C 1.45671 * 119.88789 * 151.39221 * 9 7 2 27 27 H 0.96995 * 120.00599 * 174.28978 * 1 2 3 28 28 H 1.08997 * 109.75923 * 356.93442 * 10 9 7 29 29 H 1.09002 * 109.75720 * 117.68167 * 10 9 7 30 30 H 1.08995 * 109.47082 * 61.02105 * 11 10 9 31 31 H 1.09002 * 109.47169 * 181.03099 * 11 10 9 32 32 H 1.09004 * 113.81855 * 24.45105 * 14 12 11 33 33 H 1.09004 * 113.81842 * 156.00881 * 14 12 11 34 34 H 1.08003 * 120.41864 * 180.25954 * 20 19 18 35 35 H 1.07995 * 120.74541 * 179.77215 * 21 20 19 36 36 H 1.07994 * 120.41541 * 180.02562 * 22 21 20 37 37 H 1.09001 * 108.71453 * 261.76304 * 26 9 7 38 38 H 1.08996 * 108.72350 * 19.78809 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6962 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0156 -1.2454 -0.3915 9 7 1.4199 -2.3333 0.4980 10 6 0.3997 -2.2248 1.5453 11 6 0.8658 -3.0505 2.7475 12 6 1.0622 -4.5065 2.3201 13 1 0.1449 -5.0944 2.3501 14 6 2.2679 -5.1376 3.0548 15 7 3.0771 -4.6486 1.9187 16 6 4.3676 -4.2997 1.7480 17 8 4.7560 -3.9221 0.6607 18 6 5.3150 -4.3767 2.8893 19 7 4.8731 -4.7855 4.0692 20 6 5.6895 -4.8704 5.1044 21 6 7.0219 -4.5149 4.9460 22 6 7.4490 -4.0860 3.6969 23 7 6.5799 -4.0303 2.7035 24 6 1.8921 -4.7001 1.0533 25 1 1.7593 -5.6978 0.6345 26 6 1.8036 -3.6399 -0.0194 27 1 -0.4851 -0.8358 -0.0836 28 1 0.2819 -1.1816 1.8383 29 1 -0.5494 -2.6141 1.1768 30 1 1.8090 -2.6504 3.1193 31 1 0.1143 -3.0012 3.5355 32 1 2.5057 -4.6571 4.0038 33 1 2.2203 -6.2243 3.1260 34 1 5.3240 -5.2084 6.0629 35 1 7.7107 -4.5709 5.7759 36 1 8.4790 -3.8023 3.5390 37 1 1.0702 -3.9506 -0.7635 38 1 2.7753 -3.5522 -0.5054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084733522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:02 Heat of formation + Delta-G solvation = 93.221795 kcal Electronic energy + Delta-G solvation = -23414.151054 eV Core-core repulsion = 20066.527291 eV Total energy + Delta-G solvation = -3347.623763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32250 -40.29903 -37.65258 -35.51256 -33.98861 -32.47781 -31.61479 -30.94883 -28.88714 -26.82192 -25.27457 -24.68563 -23.74315 -22.90709 -21.15869 -20.42753 -18.44025 -17.66940 -17.61011 -16.79427 -16.17851 -15.93529 -15.39550 -14.99780 -14.92132 -14.12473 -13.84594 -13.76405 -13.45965 -13.33096 -13.23072 -12.81720 -12.46124 -11.82761 -11.72458 -11.40661 -11.10860 -11.04826 -10.74527 -10.63862 -10.43376 -10.04735 -9.91487 -9.89497 -9.85852 -9.42567 -9.41005 -9.10828 -8.36735 -8.20167 -6.75561 -5.95839 -3.11221 0.35743 0.87948 2.76895 2.85718 3.58871 3.60725 3.76070 3.79306 3.87648 4.06703 4.30828 4.63396 4.66206 4.73029 4.80413 4.94805 5.18526 5.28696 5.39140 5.43791 5.55467 5.65677 5.73065 5.80776 5.93366 5.98434 6.12604 6.20313 6.43141 6.51014 6.59139 6.70895 6.77223 6.92322 7.12789 7.27664 7.73981 8.00599 8.21570 8.46887 8.70813 9.25761 9.97731 10.36879 11.32583 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.005864 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.732226 B = 4774.018283 C = 5589.247319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.026 4.026 3 Si 1.062 2.938 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.338 4.338 8 H 0.056 0.944 9 N -0.589 5.589 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.112 4.112 13 H 0.090 0.910 14 C 0.112 3.888 15 N -0.609 5.609 16 C 0.602 3.398 17 O -0.497 6.497 18 C 0.300 3.700 19 N -0.490 5.490 20 C 0.141 3.859 21 C -0.218 4.218 22 C 0.145 3.855 23 N -0.470 5.470 24 C 0.135 3.865 25 H 0.080 0.920 26 C 0.142 3.858 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.020 0.980 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -13.360 13.711 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.227 4.227 3 Si 0.892 3.108 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.467 4.467 8 H 0.074 0.926 9 N -0.313 5.313 10 C 0.022 3.978 11 C -0.157 4.157 12 C -0.131 4.131 13 H 0.109 0.891 14 C -0.010 4.010 15 N -0.345 5.345 16 C 0.386 3.614 17 O -0.368 6.368 18 C 0.030 3.970 19 N -0.207 5.207 20 C -0.025 4.025 21 C -0.240 4.240 22 C -0.022 4.022 23 N -0.184 5.184 24 C 0.032 3.968 25 H 0.098 0.902 26 C 0.015 3.985 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.190 0.810 35 H 0.169 0.831 36 H 0.192 0.808 37 H 0.038 0.962 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.092 -11.356 12.301 18.595 hybrid contribution 1.109 -1.897 0.875 2.365 sum 9.201 -13.253 13.177 20.831 Atomic orbital electron populations 1.70784 1.06472 1.30131 1.48727 1.25749 0.96513 1.01217 0.99186 0.83567 0.74774 0.76215 0.76266 1.21135 1.21960 1.22336 1.20033 0.97434 0.88303 1.40962 0.92648 1.43571 1.46044 1.01021 1.40641 1.20895 0.90251 0.99755 0.86911 1.21901 1.01228 0.93054 0.99566 1.22930 0.96542 0.98519 0.95143 0.89137 1.23570 0.86915 0.98558 0.91994 1.49512 1.05993 1.63547 1.15472 1.16706 0.79752 0.79346 0.85624 1.90818 1.75871 1.45246 1.24876 1.23112 0.90079 0.92403 0.91435 1.68498 1.38746 1.13551 0.99903 1.23329 0.89800 0.91720 0.97665 1.23142 0.98780 1.01784 1.00257 1.23397 0.99731 0.91101 0.87960 1.68287 1.02690 1.12898 1.34562 1.22567 0.80337 0.99723 0.94187 0.90201 1.20253 1.00118 0.85781 0.92341 0.92158 0.89658 0.96306 0.92157 0.92549 0.89134 0.90443 0.80956 0.83066 0.80849 0.96207 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.14 12.33 55.49 0.68 -27.45 16 2 C -0.03 -0.76 4.66 -17.43 -0.08 -0.84 16 3 Si 1.06 26.88 29.99 -169.99 -5.10 21.78 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.34 -10.07 9.42 -15.06 -0.14 -10.22 16 8 H 0.06 1.75 7.90 -52.49 -0.41 1.34 16 9 N -0.59 -15.43 2.85 -174.89 -0.50 -15.93 16 10 C 0.15 3.48 4.65 -3.92 -0.02 3.46 16 11 C -0.12 -2.20 5.66 -26.67 -0.15 -2.35 16 12 C -0.11 -1.75 4.39 -89.97 -0.40 -2.14 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.11 1.57 6.98 -3.01 -0.02 1.55 16 15 N -0.61 -11.12 3.35 -174.68 -0.58 -11.70 16 16 C 0.60 12.42 8.02 -12.01 -0.10 12.32 16 17 O -0.50 -12.19 16.00 5.39 0.09 -12.11 16 18 C 0.30 5.21 7.60 -157.08 -1.19 4.01 16 19 N -0.49 -6.80 7.95 -11.12 -0.09 -6.89 16 20 C 0.14 1.34 11.30 -17.22 -0.19 1.15 16 21 C -0.22 -1.76 10.18 -39.16 -0.40 -2.16 16 22 C 0.14 1.58 11.30 -17.22 -0.19 1.38 16 23 N -0.47 -7.77 10.13 -11.12 -0.11 -7.88 16 24 C 0.14 2.44 4.23 -69.44 -0.29 2.15 16 25 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 26 C 0.14 3.25 6.19 -5.45 -0.03 3.22 16 27 H 0.27 8.18 6.78 -40.82 -0.28 7.90 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 30 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.25 6.97 -51.93 -0.36 0.89 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.88 6.35 -51.93 -0.33 1.55 16 LS Contribution 313.15 15.07 4.72 4.72 Total: -1.00 -37.13 313.15 -8.80 -45.92 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.69 Total: -1.98 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -3.21 Total: 11.52 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -0.60 Total: -69.86 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -5.10 Total: 21.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -37.13 -8.80 -45.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084733522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.146 kcal (2) G-P(sol) polarization free energy of solvation -37.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds