Wall clock time and date at job start Tue Mar 31 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00287 * 2 1 4 4 H 1.48499 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46830 * 239.99750 * 3 2 1 6 6 H 1.48496 * 109.47019 * 119.99468 * 3 2 1 7 7 C 1.38814 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99607 * 155.22048 * 7 2 1 9 9 N 1.36941 * 120.00017 * 335.22751 * 7 2 1 10 10 C 1.46612 * 119.88772 * 331.66213 * 9 7 2 11 11 C 1.53112 * 108.00699 * 237.30477 * 10 9 7 12 12 C 1.53007 * 109.44450 * 301.02382 * 11 10 9 13 13 H 1.08998 * 113.42258 * 275.04014 * 12 11 10 14 14 C 1.54653 * 110.83509 * 143.89232 * 12 11 10 15 15 N 1.47801 * 85.79250 * 270.23021 * 14 12 11 16 16 C 1.34778 * 135.01168 * 153.79280 * 15 14 12 17 17 O 1.21473 * 119.99986 * 180.02562 * 16 15 14 18 18 C 1.48532 * 120.00137 * 0.02562 * 16 15 14 19 19 N 1.32459 * 119.18642 * 359.73172 * 18 16 15 20 20 C 1.32117 * 120.77048 * 179.75870 * 19 18 16 21 21 C 1.38803 * 119.16159 * 0.50357 * 20 19 18 22 22 C 1.38801 * 118.50663 * 359.75398 * 21 20 19 23 23 N 1.32109 * 119.16269 * 359.97438 * 22 21 20 24 24 C 1.46818 * 89.97734 * 333.80869 * 15 14 12 25 25 H 1.09008 * 110.91028 * 274.54727 * 24 15 14 26 26 C 1.45671 * 119.88789 * 151.39221 * 9 7 2 27 27 H 0.96995 * 120.00599 * 174.28978 * 1 2 3 28 28 H 1.08997 * 109.75923 * 356.93442 * 10 9 7 29 29 H 1.09002 * 109.75720 * 117.68167 * 10 9 7 30 30 H 1.08995 * 109.47082 * 61.02105 * 11 10 9 31 31 H 1.09002 * 109.47169 * 181.03099 * 11 10 9 32 32 H 1.09004 * 113.81855 * 24.45105 * 14 12 11 33 33 H 1.09004 * 113.81842 * 156.00881 * 14 12 11 34 34 H 1.08003 * 120.41864 * 180.25954 * 20 19 18 35 35 H 1.07995 * 120.74541 * 179.77215 * 21 20 19 36 36 H 1.07994 * 120.41541 * 180.02562 * 22 21 20 37 37 H 1.09001 * 108.71453 * 261.76304 * 26 9 7 38 38 H 1.08996 * 108.72350 * 19.78809 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6962 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0156 -1.2454 -0.3915 9 7 1.4199 -2.3333 0.4980 10 6 0.3997 -2.2248 1.5453 11 6 0.8658 -3.0505 2.7475 12 6 1.0622 -4.5065 2.3201 13 1 0.1449 -5.0944 2.3501 14 6 2.2679 -5.1376 3.0548 15 7 3.0771 -4.6486 1.9187 16 6 4.3676 -4.2997 1.7480 17 8 4.7560 -3.9221 0.6607 18 6 5.3150 -4.3767 2.8893 19 7 4.8731 -4.7855 4.0692 20 6 5.6895 -4.8704 5.1044 21 6 7.0219 -4.5149 4.9460 22 6 7.4490 -4.0860 3.6969 23 7 6.5799 -4.0303 2.7035 24 6 1.8921 -4.7001 1.0533 25 1 1.7593 -5.6978 0.6345 26 6 1.8036 -3.6399 -0.0194 27 1 -0.4851 -0.8358 -0.0836 28 1 0.2819 -1.1816 1.8383 29 1 -0.5494 -2.6141 1.1768 30 1 1.8090 -2.6504 3.1193 31 1 0.1143 -3.0012 3.5355 32 1 2.5057 -4.6571 4.0038 33 1 2.2203 -6.2243 3.1260 34 1 5.3240 -5.2084 6.0629 35 1 7.7107 -4.5709 5.7759 36 1 8.4790 -3.8023 3.5390 37 1 1.0702 -3.9506 -0.7635 38 1 2.7753 -3.5522 -0.5054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084733522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:01 Heat of formation + Delta-G solvation = 65.712916 kcal Electronic energy + Delta-G solvation = -23415.343929 eV Core-core repulsion = 20066.527291 eV Total energy + Delta-G solvation = -3348.816638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39272 -41.58207 -39.18590 -37.42639 -34.95076 -33.79843 -33.17827 -32.70994 -30.41384 -28.56863 -26.43839 -25.65626 -25.53709 -24.42158 -22.73357 -21.86152 -19.89643 -19.50775 -18.60363 -18.32589 -17.39428 -17.04733 -16.76275 -16.31353 -16.05235 -15.92765 -15.57663 -15.44905 -14.82169 -14.73291 -14.53650 -14.34707 -14.04716 -13.57775 -13.28599 -12.86136 -12.65337 -12.54444 -12.26278 -12.07373 -12.02139 -11.94869 -11.79356 -11.54762 -11.20644 -10.76933 -10.74392 -10.52835 -10.36631 -9.68929 -8.92480 -8.28990 -5.43302 -0.60204 0.08793 1.48537 1.50997 1.55181 1.62923 1.76417 2.57620 2.70812 2.81567 3.13100 3.17132 3.38051 3.53296 3.64097 3.76150 3.87521 4.01955 4.09765 4.22616 4.28460 4.36247 4.47655 4.55765 4.65554 4.73086 4.80078 4.84415 4.96283 5.04081 5.11363 5.13997 5.26393 5.29447 5.55136 5.81256 5.90186 6.38450 6.61438 6.77308 7.07738 7.09552 7.78344 8.14110 8.94798 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.005864 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.732226 B = 4774.018283 C = 5589.247319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.066 4.066 3 Si 1.107 2.893 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.351 4.351 8 H 0.020 0.980 9 N -0.606 5.606 10 C 0.150 3.850 11 C -0.106 4.106 12 C -0.101 4.101 13 H 0.137 0.863 14 C 0.129 3.871 15 N -0.615 5.615 16 C 0.585 3.415 17 O -0.565 6.565 18 C 0.265 3.735 19 N -0.495 5.495 20 C 0.134 3.866 21 C -0.179 4.179 22 C 0.125 3.875 23 N -0.519 5.519 24 C 0.124 3.876 25 H 0.117 0.883 26 C 0.143 3.857 27 H 0.258 0.742 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.031 0.969 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.222 0.778 35 H 0.206 0.794 36 H 0.205 0.795 37 H 0.020 0.980 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.760 -15.316 17.762 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.263 4.263 3 Si 0.932 3.068 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.481 4.481 8 H 0.038 0.962 9 N -0.331 5.331 10 C 0.025 3.975 11 C -0.145 4.145 12 C -0.120 4.120 13 H 0.155 0.845 14 C 0.009 3.991 15 N -0.350 5.350 16 C 0.371 3.629 17 O -0.442 6.442 18 C -0.005 4.005 19 N -0.212 5.212 20 C -0.032 4.032 21 C -0.201 4.201 22 C -0.040 4.040 23 N -0.236 5.236 24 C 0.021 3.979 25 H 0.134 0.866 26 C 0.016 3.984 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.239 0.761 35 H 0.223 0.777 36 H 0.221 0.779 37 H 0.038 0.962 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.369 -13.365 16.412 22.760 hybrid contribution 1.097 -1.330 -0.295 1.749 sum 9.467 -14.695 16.117 23.777 Atomic orbital electron populations 1.70882 1.06845 1.29499 1.50221 1.26966 0.96718 1.03959 0.98686 0.82963 0.74040 0.73026 0.76796 1.20140 1.20998 1.21535 1.20015 0.96168 0.90457 1.41498 0.96179 1.43736 1.46476 1.01167 1.41701 1.20837 0.89876 0.98622 0.88151 1.21731 1.00579 0.94237 0.97980 1.22925 0.98869 0.96977 0.93233 0.84534 1.23754 0.83922 1.00738 0.90700 1.49769 1.05478 1.62707 1.17020 1.17448 0.80886 0.78421 0.86104 1.90754 1.77357 1.48403 1.27674 1.22342 0.89989 0.96348 0.91802 1.68407 1.39797 1.13486 0.99539 1.24263 0.90194 0.90722 0.97982 1.23718 0.99007 0.97191 1.00153 1.24088 1.00315 0.91289 0.88319 1.68143 1.03360 1.14399 1.37651 1.22702 0.81821 0.99303 0.94122 0.86584 1.20247 0.97677 0.86090 0.94348 0.93251 0.93529 0.95911 0.94966 0.88863 0.88556 0.86270 0.76138 0.77693 0.77856 0.96224 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 12.33 21.65 0.27 -58.57 16 2 C -0.07 -4.08 4.66 84.86 0.40 -3.69 16 3 Si 1.11 56.14 29.99 68.60 2.06 58.20 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.35 -22.28 9.42 84.03 0.79 -21.48 16 8 H 0.02 1.40 7.90 -2.91 -0.02 1.37 16 9 N -0.61 -33.38 2.85 -707.23 -2.02 -35.39 16 10 C 0.15 7.21 4.65 86.40 0.40 7.62 16 11 C -0.11 -3.82 5.66 30.63 0.17 -3.64 16 12 C -0.10 -2.84 4.39 -10.32 -0.05 -2.88 16 13 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 14 C 0.13 3.17 6.98 86.34 0.60 3.77 16 15 N -0.62 -22.41 3.35 -824.87 -2.76 -25.17 16 16 C 0.59 25.44 8.02 86.99 0.70 26.14 16 17 O -0.56 -30.39 16.00 -3.63 -0.06 -30.44 16 18 C 0.26 9.34 7.60 137.68 1.05 10.38 16 19 N -0.49 -12.68 7.95 -189.09 -1.50 -14.18 16 20 C 0.13 1.95 11.30 84.79 0.96 2.91 16 21 C -0.18 -2.07 10.18 22.54 0.23 -1.84 16 22 C 0.12 2.47 11.30 84.79 0.96 3.43 16 23 N -0.52 -17.58 10.13 -189.11 -1.92 -19.50 16 24 C 0.12 4.40 4.23 43.84 0.19 4.58 16 25 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 26 C 0.14 6.89 6.19 85.91 0.53 7.42 16 27 H 0.26 16.34 6.78 -92.71 -0.63 15.71 16 28 H 0.05 2.57 6.07 -2.39 -0.01 2.56 16 29 H 0.02 1.07 7.99 -2.39 -0.02 1.05 16 30 H 0.03 1.33 7.69 -2.39 -0.02 1.31 16 31 H 0.09 2.67 8.14 -2.39 -0.02 2.66 16 32 H 0.10 2.31 6.97 -2.38 -0.02 2.29 16 33 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.22 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.21 0.15 8.06 -2.91 -0.02 0.13 16 36 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.03 1.79 6.35 -2.39 -0.02 1.77 16 Total: -1.00 -92.90 313.15 2.22 -90.68 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.22 Total: 1.65 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: 6.93 Total: 32.72 kcal Atomic # 7 Polarization: -144.88 SS G_CDS: -7.93 Total: -152.81 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.06 Total: -30.44 kcal Atomic # 14 Polarization: 56.14 SS G_CDS: 2.06 Total: 58.20 kcal Total: -92.90 2.22 -90.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084733522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.393 kcal (2) G-P(sol) polarization free energy of solvation -92.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds