Wall clock time and date at job start Tue Mar 31 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99946 * 2 1 4 4 C 1.52998 * 109.46853 * 264.20271 * 3 2 1 5 5 H 1.09004 * 112.96356 * 296.07530 * 4 3 2 6 6 C 1.53940 * 113.77086 * 67.75886 * 4 3 2 7 7 C 1.53943 * 86.28928 * 137.90679 * 6 4 3 8 8 N 1.47575 * 113.76544 * 164.40249 * 4 3 2 9 9 C 1.36940 * 134.49936 * 41.06450 * 8 4 3 10 10 H 1.08001 * 119.99611 * 339.11982 * 9 8 4 11 11 C 1.38810 * 120.00279 * 159.11871 * 9 8 4 12 12 N 1.31620 * 120.00036 * 169.23582 * 11 9 8 13 13 Si 1.86796 * 119.99982 * 349.23090 * 11 9 8 14 14 H 1.48496 * 109.47209 * 84.37822 * 13 11 9 15 15 H 1.48502 * 109.47348 * 204.37601 * 13 11 9 16 16 H 1.48499 * 109.47449 * 324.37722 * 13 11 9 17 17 C 1.34777 * 119.99938 * 179.97438 * 2 1 3 18 18 O 1.21611 * 119.99932 * 181.85900 * 17 2 1 19 19 C 1.47376 * 120.00275 * 1.86321 * 17 2 1 20 20 C 1.38134 * 126.46727 * 344.79441 * 19 17 2 21 21 N 1.34425 * 108.38594 * 180.28904 * 20 19 17 22 22 H 0.97001 * 125.38792 * 179.76530 * 21 20 19 23 23 C 1.37700 * 109.22181 * 359.73159 * 21 20 19 24 24 C 1.43196 * 125.84472 * 179.97438 * 23 21 20 25 25 N 7.18162 * 87.05912 * 185.40191 * 2 1 3 26 26 C 1.36359 * 108.31452 * 0.02562 * 23 21 20 27 27 H 1.08998 * 109.47042 * 264.73205 * 1 2 3 28 28 H 1.08991 * 109.47062 * 24.73539 * 1 2 3 29 29 H 1.08996 * 109.46700 * 144.73670 * 1 2 3 30 30 H 1.09003 * 109.46732 * 24.20032 * 3 2 1 31 31 H 1.09001 * 109.47184 * 144.19716 * 3 2 1 32 32 H 1.09001 * 113.73874 * 252.25033 * 6 4 3 33 33 H 1.08994 * 113.74597 * 23.44810 * 6 4 3 34 34 H 1.09007 * 113.77019 * 90.69150 * 7 6 4 35 35 H 1.09000 * 113.76757 * 221.97354 * 7 6 4 36 36 H 0.96994 * 120.00369 * 180.02562 * 12 11 9 37 37 H 1.08003 * 125.80578 * 0.04245 * 20 19 17 38 38 H 1.08004 * 126.49294 * 180.02562 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.5787 1.6375 -1.4351 5 1 3.2663 0.9239 -1.8893 6 6 1.3739 1.9913 -2.3257 7 6 2.2409 3.1415 -2.8693 8 7 2.9893 3.0456 -1.5983 9 6 3.7548 3.9132 -0.8659 10 1 3.9246 3.7287 0.1846 11 6 4.3126 5.0296 -1.4736 12 7 4.8662 5.9711 -0.7391 13 14 4.2776 5.1957 -3.3338 14 1 2.9773 5.7764 -3.7546 15 1 5.3823 6.0861 -3.7722 16 1 4.4456 3.8568 -3.9537 17 6 2.1389 -1.1672 0.0005 18 8 3.3546 -1.1675 0.0347 19 6 1.4027 -2.4432 -0.0404 20 6 0.0562 -2.6226 0.2103 21 7 -0.2293 -3.9296 0.0784 22 1 -1.1044 -4.3288 0.2034 23 6 0.9171 -4.6117 -0.2632 24 6 1.0173 -6.0219 -0.4910 25 7 1.0966 -7.1403 -0.6752 26 6 1.9408 -3.7148 -0.3463 27 1 -0.3633 -0.0944 1.0233 28 1 -0.3633 0.9333 -0.4300 29 1 -0.3632 -0.8391 -0.5933 30 1 1.5674 2.0520 0.4213 31 1 3.1010 1.1667 0.6012 32 1 1.1391 1.2296 -3.0691 33 1 0.4988 2.3248 -1.7680 34 1 2.8302 2.8712 -3.7456 35 1 1.6990 4.0790 -2.9939 36 1 5.2556 6.7514 -1.1637 37 1 -0.6468 -1.8456 0.4722 38 1 2.9686 -3.9343 -0.5952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085552174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:53 Heat of formation + Delta-G solvation = 128.070034 kcal Electronic energy + Delta-G solvation = -22103.858076 eV Core-core repulsion = 18757.745446 eV Total energy + Delta-G solvation = -3346.112630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93871 -39.47497 -37.97686 -36.81626 -35.32056 -32.24202 -31.85661 -30.66650 -28.51719 -28.28629 -26.74280 -23.91957 -22.99551 -22.82864 -21.73314 -20.48807 -19.36993 -18.50595 -17.05122 -16.69495 -16.01886 -15.75781 -15.55045 -15.17641 -15.00842 -14.63765 -14.11832 -13.72101 -13.52461 -13.34017 -13.21881 -13.09642 -12.94723 -12.86610 -12.72818 -12.32824 -11.88498 -11.80080 -11.52661 -11.03167 -10.68990 -10.19917 -10.06019 -9.91149 -9.77037 -9.50324 -9.38221 -8.85209 -8.74066 -8.37281 -7.02798 -5.86988 -3.23781 0.96864 1.61967 1.87945 2.74733 3.00647 3.07489 3.37243 3.48269 3.49436 3.49504 3.65544 4.43284 4.56283 4.58556 4.75509 4.84293 4.96582 5.19812 5.23158 5.29243 5.37299 5.51178 5.58233 5.75288 5.84598 5.95436 6.09686 6.15035 6.23347 6.27537 6.40241 6.46992 6.56622 6.64479 6.71469 7.04435 7.08539 7.34649 7.57423 8.37804 8.42905 8.74685 9.69183 10.37002 11.30186 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.003310 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.472478 B = 8458.041187 C = 8513.671265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.122 3.878 4 C 0.131 3.869 5 H 0.054 0.946 6 C -0.143 4.143 7 C 0.096 3.904 8 N -0.616 5.616 9 C -0.227 4.227 10 H 0.097 0.903 11 C 0.017 3.983 12 N -0.921 5.921 13 Si 0.887 3.113 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.271 1.271 17 C 0.581 3.419 18 O -0.532 6.532 19 C -0.214 4.214 20 C 0.062 3.938 21 N -0.522 5.522 22 H 0.425 0.575 23 C 0.040 3.960 24 C 0.281 3.719 25 N -0.408 5.408 26 C -0.048 4.048 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.205 0.795 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 -17.461 1.428 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.337 5.337 3 C -0.001 4.001 4 C 0.023 3.977 5 H 0.071 0.929 6 C -0.182 4.182 7 C -0.029 4.029 8 N -0.344 5.344 9 C -0.353 4.353 10 H 0.115 0.885 11 C -0.180 4.180 12 N -0.567 5.567 13 Si 0.717 3.283 14 H -0.213 1.213 15 H -0.228 1.228 16 H -0.196 1.196 17 C 0.370 3.630 18 O -0.409 6.409 19 C -0.224 4.224 20 C -0.079 4.079 21 N -0.117 5.117 22 H 0.263 0.737 23 C -0.072 4.072 24 C -0.035 4.035 25 N -0.085 5.085 26 C -0.076 4.076 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.221 0.779 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.047 -18.957 1.309 24.872 hybrid contribution -0.330 0.562 -1.007 1.199 sum -16.377 -18.396 0.302 24.631 Atomic orbital electron populations 1.22398 0.80755 1.04095 1.01136 1.47623 1.06428 1.06267 1.73389 1.21692 0.97269 0.82567 0.98577 1.22532 0.93265 0.88513 0.93341 0.92881 1.23578 0.97489 0.98094 0.98993 1.22815 0.92193 0.97191 0.90682 1.46548 1.58874 1.06389 1.22628 1.18739 1.23374 1.00841 0.92391 0.88521 1.25021 0.97969 0.97447 0.97586 1.69726 1.42499 1.09844 1.34582 0.86772 0.76743 0.77461 0.87325 1.21283 1.22764 1.19611 1.17368 0.86722 0.82370 0.76590 1.90830 1.13248 1.86972 1.49837 1.19718 0.93114 0.94548 1.15028 1.23633 0.97416 0.84940 1.01862 1.41676 1.10059 1.07255 1.52686 0.73655 1.15183 0.88295 0.84997 1.18687 1.24316 0.94991 0.90824 0.93331 1.81342 1.05665 1.11168 1.10305 1.21126 0.98463 0.89699 0.98325 0.92411 0.90166 0.90262 0.89702 0.90007 0.92621 0.90369 0.93951 0.92653 0.92782 0.77923 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 8.56 59.85 0.51 0.93 16 2 N -0.60 -7.54 2.81 -182.87 -0.51 -8.06 16 3 C 0.12 2.02 5.23 -4.04 -0.02 2.00 16 4 C 0.13 2.51 4.52 -66.87 -0.30 2.21 16 5 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 6 C -0.14 -2.30 7.38 -25.80 -0.19 -2.49 16 7 C 0.10 1.99 5.82 -2.85 -0.02 1.98 16 8 N -0.62 -14.71 3.30 -169.75 -0.56 -15.27 16 9 C -0.23 -6.42 10.95 -15.06 -0.16 -6.58 16 10 H 0.10 2.89 8.06 -52.49 -0.42 2.46 16 11 C 0.02 0.51 5.50 -17.43 -0.10 0.42 16 12 N -0.92 -28.77 13.97 55.49 0.78 -28.00 16 13 Si 0.89 22.87 25.17 -169.99 -4.28 18.59 16 14 H -0.29 -7.11 6.95 56.52 0.39 -6.72 16 15 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 16 H -0.27 -6.84 5.99 56.52 0.34 -6.50 16 17 C 0.58 8.14 7.62 -12.54 -0.10 8.05 16 18 O -0.53 -10.03 16.62 5.27 0.09 -9.94 16 19 C -0.21 -2.12 5.91 -105.01 -0.62 -2.74 16 20 C 0.06 0.33 9.75 -16.45 -0.16 0.17 16 21 N -0.52 -2.30 6.02 -10.29 -0.06 -2.37 16 22 H 0.43 0.43 8.96 -40.82 -0.37 0.07 16 23 C 0.04 0.30 6.90 -83.98 -0.58 -0.28 16 24 C 0.28 2.52 15.88 -22.47 -0.36 2.16 16 25 N -0.41 -4.58 18.54 41.85 0.78 -3.80 16 26 C -0.05 -0.46 10.62 -39.05 -0.41 -0.87 16 27 H 0.06 0.28 7.58 -51.93 -0.39 -0.12 16 28 H 0.08 0.57 6.80 -51.93 -0.35 0.21 16 29 H 0.08 0.37 4.92 -51.93 -0.26 0.11 16 30 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 31 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.10 7.11 -51.93 -0.37 0.73 16 34 H 0.04 0.91 6.50 -51.93 -0.34 0.57 16 35 H 0.06 1.16 7.26 -51.93 -0.38 0.79 16 36 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.20 0.42 4.66 -52.48 -0.24 0.18 16 38 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -37.09 321.22 -5.85 -42.93 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.40 Total: -3.89 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -2.51 Total: 4.96 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.41 Total: -57.50 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.28 Total: 18.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.09 -5.85 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085552174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.005 kcal (2) G-P(sol) polarization free energy of solvation -37.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds