Wall clock time and date at job start Tue Mar 31 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99946 * 2 1 4 4 C 1.52998 * 109.46853 * 264.20271 * 3 2 1 5 5 H 1.09004 * 112.96356 * 296.07530 * 4 3 2 6 6 C 1.53940 * 113.77086 * 67.75886 * 4 3 2 7 7 C 1.53943 * 86.28928 * 137.90679 * 6 4 3 8 8 N 1.47575 * 113.76544 * 164.40249 * 4 3 2 9 9 C 1.36940 * 134.49936 * 41.06450 * 8 4 3 10 10 H 1.08001 * 119.99611 * 339.11982 * 9 8 4 11 11 C 1.38810 * 120.00279 * 159.11871 * 9 8 4 12 12 N 1.31620 * 120.00036 * 169.23582 * 11 9 8 13 13 Si 1.86796 * 119.99982 * 349.23090 * 11 9 8 14 14 H 1.48496 * 109.47209 * 84.37822 * 13 11 9 15 15 H 1.48502 * 109.47348 * 204.37601 * 13 11 9 16 16 H 1.48499 * 109.47449 * 324.37722 * 13 11 9 17 17 C 1.34777 * 119.99938 * 179.97438 * 2 1 3 18 18 O 1.21611 * 119.99932 * 181.85900 * 17 2 1 19 19 C 1.47376 * 120.00275 * 1.86321 * 17 2 1 20 20 C 1.38134 * 126.46727 * 344.79441 * 19 17 2 21 21 N 1.34425 * 108.38594 * 180.28904 * 20 19 17 22 22 H 0.97001 * 125.38792 * 179.76530 * 21 20 19 23 23 C 1.37700 * 109.22181 * 359.73159 * 21 20 19 24 24 C 1.43196 * 125.84472 * 179.97438 * 23 21 20 25 25 N 7.18162 * 87.05912 * 185.40191 * 2 1 3 26 26 C 1.36359 * 108.31452 * 0.02562 * 23 21 20 27 27 H 1.08998 * 109.47042 * 264.73205 * 1 2 3 28 28 H 1.08991 * 109.47062 * 24.73539 * 1 2 3 29 29 H 1.08996 * 109.46700 * 144.73670 * 1 2 3 30 30 H 1.09003 * 109.46732 * 24.20032 * 3 2 1 31 31 H 1.09001 * 109.47184 * 144.19716 * 3 2 1 32 32 H 1.09001 * 113.73874 * 252.25033 * 6 4 3 33 33 H 1.08994 * 113.74597 * 23.44810 * 6 4 3 34 34 H 1.09007 * 113.77019 * 90.69150 * 7 6 4 35 35 H 1.09000 * 113.76757 * 221.97354 * 7 6 4 36 36 H 0.96994 * 120.00369 * 180.02562 * 12 11 9 37 37 H 1.08003 * 125.80578 * 0.04245 * 20 19 17 38 38 H 1.08004 * 126.49294 * 180.02562 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.5787 1.6375 -1.4351 5 1 3.2663 0.9239 -1.8893 6 6 1.3739 1.9913 -2.3257 7 6 2.2409 3.1415 -2.8693 8 7 2.9893 3.0456 -1.5983 9 6 3.7548 3.9132 -0.8659 10 1 3.9246 3.7287 0.1846 11 6 4.3126 5.0296 -1.4736 12 7 4.8662 5.9711 -0.7391 13 14 4.2776 5.1957 -3.3338 14 1 2.9773 5.7764 -3.7546 15 1 5.3823 6.0861 -3.7722 16 1 4.4456 3.8568 -3.9537 17 6 2.1389 -1.1672 0.0005 18 8 3.3546 -1.1675 0.0347 19 6 1.4027 -2.4432 -0.0404 20 6 0.0562 -2.6226 0.2103 21 7 -0.2293 -3.9296 0.0784 22 1 -1.1044 -4.3288 0.2034 23 6 0.9171 -4.6117 -0.2632 24 6 1.0173 -6.0219 -0.4910 25 7 1.0966 -7.1403 -0.6752 26 6 1.9408 -3.7148 -0.3463 27 1 -0.3633 -0.0944 1.0233 28 1 -0.3633 0.9333 -0.4300 29 1 -0.3632 -0.8391 -0.5933 30 1 1.5674 2.0520 0.4213 31 1 3.1010 1.1667 0.6012 32 1 1.1391 1.2296 -3.0691 33 1 0.4988 2.3248 -1.7680 34 1 2.8302 2.8712 -3.7456 35 1 1.6990 4.0790 -2.9939 36 1 5.2556 6.7514 -1.1637 37 1 -0.6468 -1.8456 0.4722 38 1 2.9686 -3.9343 -0.5952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085552174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:53 Heat of formation + Delta-G solvation = 99.835660 kcal Electronic energy + Delta-G solvation = -22105.082410 eV Core-core repulsion = 18757.745446 eV Total energy + Delta-G solvation = -3347.336964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.56902 -40.65417 -39.43795 -37.59346 -36.41688 -34.36665 -32.58465 -31.48423 -30.29203 -29.45809 -27.59611 -25.31752 -24.73029 -23.49475 -22.75580 -21.15101 -20.92971 -19.53626 -18.65726 -17.68904 -17.41797 -16.91136 -16.62905 -16.41657 -15.96356 -15.49081 -15.29604 -15.20487 -14.80946 -14.42636 -14.21613 -14.18087 -13.97266 -13.79079 -13.68882 -13.62482 -13.45786 -13.22776 -12.78813 -12.54231 -12.13754 -11.95664 -11.81553 -11.66089 -11.21335 -10.98051 -10.82924 -10.18330 -9.54382 -9.35992 -8.98499 -8.12086 -5.44424 0.36983 0.84948 1.24380 1.30159 1.38344 1.45279 2.06610 2.13194 2.29525 2.43907 2.60127 3.02487 3.15540 3.18837 3.73483 3.81477 4.12476 4.14671 4.28651 4.34591 4.43347 4.46354 4.64690 4.66726 4.78168 4.86577 4.90663 4.98529 5.01458 5.08128 5.14884 5.32673 5.41970 5.57245 5.59487 5.72980 6.21135 6.27485 6.44898 6.58331 6.63213 7.38964 7.48307 8.31898 9.09435 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.003310 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.472478 B = 8458.041187 C = 8513.671265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.599 5.599 3 C 0.136 3.864 4 C 0.125 3.875 5 H 0.028 0.972 6 C -0.105 4.105 7 C 0.082 3.918 8 N -0.643 5.643 9 C -0.213 4.213 10 H 0.062 0.938 11 C -0.048 4.048 12 N -0.971 5.971 13 Si 0.950 3.050 14 H -0.266 1.266 15 H -0.309 1.309 16 H -0.265 1.265 17 C 0.575 3.425 18 O -0.601 6.601 19 C -0.250 4.250 20 C 0.114 3.886 21 N -0.496 5.496 22 H 0.448 0.552 23 C 0.043 3.957 24 C 0.304 3.696 25 N -0.450 5.450 26 C -0.064 4.064 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.249 0.751 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.664 -18.776 0.434 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.330 5.330 3 C 0.012 3.988 4 C 0.019 3.981 5 H 0.046 0.954 6 C -0.143 4.143 7 C -0.042 4.042 8 N -0.372 5.372 9 C -0.341 4.341 10 H 0.080 0.920 11 C -0.241 4.241 12 N -0.619 5.619 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.237 1.237 16 H -0.190 1.190 17 C 0.367 3.633 18 O -0.483 6.483 19 C -0.260 4.260 20 C -0.029 4.029 21 N -0.092 5.092 22 H 0.291 0.709 23 C -0.069 4.069 24 C -0.011 4.011 25 N -0.127 5.127 26 C -0.093 4.093 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.265 0.735 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.902 -20.348 0.301 29.173 hybrid contribution 1.100 0.892 -0.606 1.540 sum -19.803 -19.456 -0.305 27.763 Atomic orbital electron populations 1.22897 0.76682 1.06044 1.04092 1.47625 1.08703 1.04102 1.72602 1.21234 0.96435 0.84989 0.96177 1.22699 0.94314 0.85476 0.95627 0.95408 1.23392 0.96188 0.96404 0.98271 1.23049 0.92741 0.99284 0.89116 1.46829 1.58405 1.08226 1.23728 1.18663 1.22499 1.01202 0.91732 0.91982 1.25726 0.98813 0.97549 1.02043 1.69879 1.44934 1.10773 1.36361 0.85758 0.77193 0.77373 0.81873 1.19126 1.23724 1.18988 1.17996 0.86204 0.83882 0.75262 1.90794 1.16415 1.87974 1.53079 1.19341 0.95120 0.92422 1.19088 1.24083 0.95759 0.85640 0.97458 1.41658 1.10178 1.06720 1.50668 0.70938 1.14831 0.88974 0.83979 1.19111 1.24375 0.93715 0.90821 0.92170 1.81369 1.07047 1.12460 1.11861 1.21090 0.98535 0.90582 0.99099 0.89095 0.89304 0.87068 0.88759 0.94426 0.88968 0.87267 0.94311 0.92541 0.93107 0.73549 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 8.56 127.77 1.09 1.45 16 2 N -0.60 -13.64 2.81 -850.72 -2.39 -16.03 16 3 C 0.14 4.50 5.23 86.38 0.45 4.96 16 4 C 0.13 4.74 4.52 45.09 0.20 4.94 16 5 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 6 C -0.10 -2.93 7.38 31.25 0.23 -2.70 16 7 C 0.08 3.21 5.82 86.44 0.50 3.71 16 8 N -0.64 -30.69 3.30 -690.96 -2.28 -32.97 16 9 C -0.21 -12.45 10.95 84.03 0.92 -11.53 16 10 H 0.06 3.96 8.06 -2.91 -0.02 3.93 16 11 C -0.05 -2.93 5.50 84.86 0.47 -2.46 16 12 N -0.97 -63.02 13.97 21.65 0.30 -62.72 16 13 Si 0.95 47.91 25.17 68.60 1.73 49.64 16 14 H -0.27 -12.39 6.95 99.48 0.69 -11.70 16 15 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 16 H -0.26 -12.90 5.99 99.48 0.60 -12.31 16 17 C 0.58 15.81 7.62 86.65 0.66 16.47 16 18 O -0.60 -24.07 16.62 -4.06 -0.07 -24.14 16 19 C -0.25 -4.35 5.91 -20.11 -0.12 -4.47 16 20 C 0.11 0.59 9.75 84.27 0.82 1.41 16 21 N -0.50 -1.88 6.02 -186.47 -1.12 -3.01 16 22 H 0.45 -1.76 8.96 -92.71 -0.83 -2.59 16 23 C 0.04 0.53 6.90 39.03 0.27 0.80 16 24 C 0.30 4.98 15.88 88.33 1.40 6.39 16 25 N -0.45 -9.72 18.54 19.01 0.35 -9.37 16 26 C -0.06 -1.18 10.62 22.61 0.24 -0.94 16 27 H 0.09 0.24 7.58 -2.39 -0.02 0.22 16 28 H 0.09 0.68 6.80 -2.39 -0.02 0.66 16 29 H 0.11 0.21 4.92 -2.39 -0.01 0.20 16 30 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 31 H 0.04 1.56 7.58 -2.39 -0.02 1.54 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 2.44 7.11 -2.39 -0.02 2.42 16 34 H 0.04 1.56 6.50 -2.38 -0.02 1.55 16 35 H 0.06 2.20 7.26 -2.39 -0.02 2.18 16 36 H 0.26 16.08 8.31 -92.71 -0.77 15.30 16 37 H 0.25 -0.95 4.66 -2.91 -0.01 -0.97 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -90.08 321.22 3.82 -86.25 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 0.16 Total: -5.68 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.15 Total: 18.03 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -5.14 Total: -124.09 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.07 Total: -24.14 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.73 Total: 49.64 kcal Total: -90.08 3.82 -86.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085552174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.086 kcal (2) G-P(sol) polarization free energy of solvation -90.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds