Wall clock time and date at job start Tue Mar 31 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.99644 * 2 1 4 4 C 1.54323 * 109.88586 * 238.89879 * 2 1 3 5 5 H 1.09004 * 110.71856 * 336.92853 * 4 2 1 6 6 N 1.46499 * 110.71887 * 100.02316 * 4 2 1 7 7 C 1.34779 * 119.99868 * 202.55879 * 6 4 2 8 8 O 1.21280 * 119.99846 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99883 * 180.02562 * 7 6 4 10 10 H 1.09001 * 115.55150 * 325.67063 * 9 7 6 11 11 C 1.52999 * 117.49932 * 111.37780 * 9 7 6 12 12 C 1.52998 * 117.50058 * 180.02562 * 9 7 6 13 13 H 1.09001 * 117.49778 * 0.02562 * 12 9 7 14 14 C 1.52997 * 117.49989 * 145.01694 * 12 9 7 15 15 F 1.39905 * 109.47157 * 185.00032 * 14 12 9 16 16 F 1.39900 * 109.47010 * 65.00423 * 14 12 9 17 17 C 1.55158 * 103.10223 * 218.47726 * 4 2 1 18 18 C 1.54912 * 101.58069 * 35.41347 * 17 4 2 19 19 N 1.47324 * 110.06448 * 121.16319 * 2 1 3 20 20 C 1.36939 * 125.61548 * 298.25507 * 19 2 1 21 21 H 1.07996 * 119.99930 * 359.82931 * 20 19 2 22 22 C 1.38810 * 119.99747 * 179.83530 * 20 19 2 23 23 N 1.31621 * 119.99909 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00054 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46848 * 60.00012 * 24 22 20 26 26 H 1.48502 * 109.47356 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47097 * 300.00182 * 24 22 20 28 28 H 1.08999 * 109.46896 * 181.10117 * 1 2 3 29 29 H 1.08994 * 109.47527 * 301.09697 * 1 2 3 30 30 H 1.09000 * 109.46923 * 61.10330 * 1 2 3 31 31 H 0.97000 * 119.99666 * 22.56368 * 6 4 2 32 32 H 1.09000 * 117.49768 * 359.97438 * 11 9 7 33 33 H 1.09007 * 117.49691 * 214.97491 * 11 9 7 34 34 H 1.09004 * 109.47261 * 305.00222 * 14 12 9 35 35 H 1.09005 * 111.00050 * 153.48424 * 17 4 2 36 36 H 1.08993 * 111.00588 * 277.30021 * 17 4 2 37 37 H 1.09001 * 110.36464 * 81.82769 * 18 17 4 38 38 H 1.08996 * 110.36739 * 204.14951 * 18 17 4 39 39 H 0.97001 * 119.99818 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4439 -1.6199 6 7 2.4555 0.1959 -2.2875 7 6 2.5056 -0.2029 -3.5739 8 8 2.2186 -1.3443 -3.8666 9 6 2.9182 0.7696 -4.6487 10 1 2.6109 1.8033 -4.4905 11 6 4.2614 0.5295 -5.3409 12 6 2.9548 0.2564 -6.0896 13 1 2.6800 -0.7845 -6.2602 14 6 2.5582 1.2337 -7.1979 15 9 2.5406 0.5639 -8.4260 16 9 3.4853 2.2801 -7.2507 17 6 3.2871 -1.5177 -0.6956 18 6 2.8161 -1.8830 0.7343 19 7 2.0354 -0.7161 1.1841 20 6 1.8140 -0.3582 2.4872 21 1 1.2260 0.5188 2.7139 22 6 2.3455 -1.1226 3.5168 23 7 3.0619 -2.1917 3.2405 24 14 2.0441 -0.6340 5.2944 25 1 0.5842 -0.6315 5.5663 26 1 2.7142 -1.6059 6.1954 27 1 2.5948 0.7241 5.5347 28 1 -0.3633 -1.0275 0.0197 29 1 -0.3634 0.5307 0.8799 30 1 -0.3633 0.4966 -0.8997 31 1 2.6847 1.1089 -2.0534 32 1 4.8468 -0.3316 -5.0185 33 1 4.8381 1.4055 -5.6381 34 1 1.5670 1.6366 -6.9895 35 1 3.4812 -2.4145 -1.2840 36 1 4.1666 -0.8747 -0.6655 37 1 2.1881 -2.7735 0.7110 38 1 3.6742 -2.0400 1.3878 39 1 3.4336 -2.7256 3.9600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088550510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:42 Heat of formation + Delta-G solvation = -91.013261 kcal Electronic energy + Delta-G solvation = -22957.939937 eV Core-core repulsion = 19151.637956 eV Total energy + Delta-G solvation = -3806.301981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.26627 -47.28858 -40.08625 -37.99550 -36.46951 -34.07297 -32.05313 -30.42253 -28.84357 -27.69893 -25.48613 -24.04292 -23.49306 -21.52563 -20.49021 -20.19916 -19.54347 -18.03444 -17.61505 -17.26974 -16.80265 -16.46669 -15.91810 -14.85932 -14.75729 -14.44012 -14.07595 -13.98238 -13.66237 -13.59498 -13.43206 -12.87775 -12.83501 -12.55342 -12.17503 -12.02120 -11.62013 -11.56306 -11.18700 -10.96471 -10.88813 -10.82355 -10.80010 -10.59572 -10.45177 -10.15199 -9.83415 -9.74923 -9.58563 -8.73738 -8.66100 -6.91739 -5.68786 -3.11965 2.38778 2.95566 3.37086 3.37775 3.42140 3.43492 3.54741 3.92894 4.08724 4.29834 4.44902 4.55287 4.75953 4.84441 4.92713 5.22983 5.36798 5.38389 5.49211 5.57765 5.59336 5.71206 5.77228 6.07245 6.20033 6.25926 6.29665 6.48214 6.55436 6.66439 6.81806 7.05355 7.47525 7.58053 7.64381 7.81422 8.28524 8.32734 9.16936 9.77637 10.41355 11.34496 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.042373 B = 0.002989 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.644179 B = 9364.154809 C = 9481.604964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.134 3.866 5 H 0.093 0.907 6 N -0.708 5.708 7 C 0.541 3.459 8 O -0.541 6.541 9 C -0.169 4.169 10 H 0.130 0.870 11 C -0.130 4.130 12 C -0.193 4.193 13 H 0.146 0.854 14 C 0.295 3.705 15 F -0.200 7.200 16 F -0.204 7.204 17 C -0.153 4.153 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.222 4.222 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.400 0.600 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.110 0.890 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 8.110 -17.636 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.111 0.889 6 N -0.358 5.358 7 C 0.326 3.674 8 O -0.418 6.418 9 C -0.190 4.190 10 H 0.148 0.852 11 C -0.168 4.168 12 C -0.212 4.212 13 H 0.163 0.837 14 C 0.241 3.759 15 F -0.182 7.182 16 F -0.185 7.185 17 C -0.192 4.192 18 C 0.028 3.972 19 N -0.321 5.321 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.234 0.766 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.127 0.873 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.052 7.206 -17.616 19.033 hybrid contribution -0.142 0.698 0.982 1.213 sum -0.090 7.904 -16.633 18.416 Atomic orbital electron populations 1.22233 0.97825 1.01483 0.99929 1.21049 0.92585 0.94806 0.86901 0.94571 1.22196 0.97718 0.90775 0.86328 0.88931 1.45981 1.68235 1.15295 1.06247 1.19393 0.77420 0.87681 0.82932 1.90710 1.49144 1.19722 1.82254 1.22318 1.04243 1.00642 0.91812 0.85214 1.23128 0.89384 1.04827 0.99440 1.23434 1.04910 1.02162 0.90741 0.83660 1.21212 0.92686 0.81424 0.80545 1.93000 1.97324 1.81398 1.46446 1.92970 1.69652 1.59308 1.96559 1.23398 0.96717 0.99297 0.99828 1.21951 0.97438 0.88338 0.89466 1.44559 1.59307 1.28157 1.00048 1.18978 1.27468 1.08101 0.80507 0.90498 1.24790 1.00331 0.97320 0.98081 1.69782 1.39100 1.17665 1.30385 0.86154 0.77655 0.77431 0.84241 1.21212 1.21568 1.21165 0.92902 0.92673 0.94321 0.76596 0.87117 0.86513 0.86518 0.92022 0.91955 0.96775 0.87285 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.15 37.16 0.34 -2.45 16 2 C 0.15 3.00 3.49 -66.79 -0.23 2.77 16 3 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 4 C 0.13 2.35 2.79 -66.10 -0.18 2.17 16 5 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 6 N -0.71 -9.68 5.19 -52.03 -0.27 -9.95 16 7 C 0.54 7.34 7.61 -10.98 -0.08 7.26 16 8 O -0.54 -9.46 15.94 5.56 0.09 -9.37 16 9 C -0.17 -1.58 5.91 -91.77 -0.54 -2.12 16 10 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.13 -1.13 9.62 -26.71 -0.26 -1.39 16 12 C -0.19 -1.75 5.66 -90.60 -0.51 -2.27 16 13 H 0.15 1.53 7.67 -51.93 -0.40 1.13 16 14 C 0.30 2.32 5.65 37.16 0.21 2.53 16 15 F -0.20 -1.98 17.34 2.25 0.04 -1.94 16 16 F -0.20 -1.81 15.90 2.25 0.04 -1.77 16 17 C -0.15 -2.96 6.77 -24.58 -0.17 -3.12 16 18 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 19 N -0.60 -14.54 3.14 -162.35 -0.51 -15.05 16 20 C -0.22 -5.95 9.91 -15.06 -0.15 -6.10 16 21 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 24 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.02 8.06 -51.93 -0.42 0.61 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 4.45 8.34 -40.82 -0.34 4.11 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.12 0.86 7.18 -51.92 -0.37 0.49 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -31.09 329.85 -7.34 -38.43 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.54 Total: 3.33 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.69 Total: 0.56 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.22 Total: -50.78 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.07 Total: -3.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.09 -7.34 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088550510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.584 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds